ID HM195288; SV 1; linear; genomic RNA; STD; VRL; 6734 BP. XX AC HM195288; XX DT 29-DEC-2010 (Rel. 107, Created) DT 23-MAR-2011 (Rel. 108, Last updated, Version 2) XX DE Tobacco rattle virus replication-associated protein 2, DE replication-associated protein 1, movement protein, and 16K protein genes, DE complete cds. XX KW . XX OS Tobacco rattle virus OC Viruses; Riboviria; Virgaviridae; Tobravirus. XX RN [1] RP 1-6734 RX DOI; 10.1099/vir.0.028803-0. RX PUBMED; 21169212. RA Koenig R., Lesemann D.E., Pfeilstetter E., Winter S., Pleij C.W.; RT "Deletions and recombinations with the RNA1 3' ends of different RT tobraviruses have created a multitude of tobacco rattle virus TCM-related RT RNA2 species in Alstroemeria and tulip"; RL J. Gen. Virol. 92(Pt 4):988-996(2011). XX RN [2] RP 1-6734 RA Koenig R.; RT ; RL Submitted (03-MAY-2010) to the INSDC. RL Institut fuer Epidemiologie und Pathogendiagnostik, Julius Kuehn Institut, RL Bundesforschungsinstitut fuer Kulturpflanzen, Messeweg 11, Braunschweig RL D38104, Germany XX DR MD5; 0c5de017cc4da2708069eb20e0688aea. XX FH Key Location/Qualifiers FH FT source 1..6734 FT /organism="Tobacco rattle virus" FT /segment="1" FT /host="Alstroemeria" FT /strain="AL" FT /mol_type="genomic RNA" FT /db_xref="taxon:12295" FT CDS 180..5303 FT /codon_start=1 FT /transl_except=(pos:3741..3743,aa:OTHER) FT /product="replication-associated protein 2" FT /note="readthrough stop codon" FT /db_xref="GOA:E7CL00" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:E7CL00" FT /protein_id="ADU05353.1" FT /translation="MANGNFKLSQLLNVDEMSAEQRSHFFDLMLTKPDCEIGQMMQRVV FT VDKVDDMLRERKTKDPVIVHEVLSQKEQNKLMEIYPEFNIVFKDDKNMVHGFAAAERKL FT QALLLLDRVPALQEVDDIGGQWSFWVTRGEKRIHSCCPNLDIRDDQREISRQIFLTAIG FT DQARSGKRQMSENELWMYDQFRENITAPNAVRCNNTYQGCTCRGFSDGKKKGAQYAIAL FT HSLYDFKLKDLMSTMVEKKTKVVHAAMLFAPESMLVDEGPLPSVDGYYMKKNGKIYFGF FT EKDPSFSYIHDWEEYKKYLLGKPVSYQGNVFYFEPWQVRGDTMLFSIYRIAGVPRRSLS FT SQEYYRRIYISRWENMVVVPIFDLVESTRELVKKDLFVEKQFMDKCLDYIARLSDQQLT FT ISNVKSYLSSNNWVLFINGAAVKNKQSVDSRDLQLLAQTLLVKEQVARPVMRELREAIL FT TETKPITSLSDVLSLISKKLWKQFANKIAVGGFVGMVATLIGLYPRKVLTWAKGTSSGP FT ELCYENTHKTKVIVFLSVVYAIGGITLMRRDIRDGLVKKLCDMFDIKRGAHVLDVENPC FT RYYEINDFFSSLYSASESGETVLPDLSDVKAKSDKLLQQKKEIADEFLCAKFSNYSGSS FT TRTSPPSVVGSSRSGLGLLLEDSNVLTQARVGVSRKVDDEEIMEQFLSGLIDTEEEIDG FT IVSAFSVECERGETSGTKVLCKPLTPPGFENVLPTVKPLFNKGKTIKSTDYFQVMGGER FT LPKRPVVSGDDSVDARKEFLYYLDAERVAQNDEIMSLYRDYSRGVIRTGGQNYPHGLGV FT WDVEMKNWCIRPVVTEHAYVFQPDKRMDDWSGYLEVAVWERGMLVNNFAVERKSDYVIV FT CDQTYLCNNRLILDNLSALDLGPIDCSFELVDGVPGCGKSTMIVNSANPCVDVVLSTGR FT AATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGCLTGDVLHFDEALMAHAGMVYFC FT AQIARAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDVVTEKRETYRSPADVAAVLN FT KFYTGDVRTHNATANSMAVRKIVSKEQVSLKPGAQYITFLQSEKKELMNLLALRKVAAK FT VSTVHESQGETFKDVVLVRTKPTDDSIARGREYMIVALSRHTQSLVYETVKEDDVSKEI FT RESAALTKAALARFFVTETVLXRFRSRFDVFRHHEGPCAVPDSGTITDLEMWYDALFPG FT NSLRDSSLDGYLVATTDCNLRLDNVTIKSGNWKDKFAEKETFLKPVIRTAMPDKRKTTQ FT LESLLALQKRNQAAPDLQENVHATVLIEETMKKLKSVVYDVGKIRADPIVNRAQMERWW FT RNQSTAVQAKVVADVRELHEIDYSSYMYMIKSDVKPKTDLTPQFEYSALQTVVYHEKLI FT NSLFGPIFKEINERKLDAMQPHFVFNTRMTSSDLNDRVKFLNTEAAYDFVEIDMSKFDK FT SANRFHLQLQLEIYRLFGLDEWAAFLWEVSHTQTTVRDIQNGMMAHIWYQQKSGDADTY FT NANSDRTLCALLSELPLEKAVMVTYGGDDSLIAFPRGTQFVDPCPKLATKWNFECKIFK FT YDVPMFCGKFLLKTSSCYEFVPDPVKVLTKLGKKSIKDVQHLAEIYISLNDSNRALGNY FT MVVSKLSESISDRYLYKGDSVHALCALWKHIKSFTALCTLFRDEKDKELNPAQVDWKRA FT QRAVSNFYDW" FT CDS 180..3743 FT /codon_start=1 FT /product="replication-associated protein 1" FT /db_xref="GOA:E7CL01" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:E7CL01" FT /protein_id="ADU05352.1" FT /translation="MANGNFKLSQLLNVDEMSAEQRSHFFDLMLTKPDCEIGQMMQRVV FT VDKVDDMLRERKTKDPVIVHEVLSQKEQNKLMEIYPEFNIVFKDDKNMVHGFAAAERKL FT QALLLLDRVPALQEVDDIGGQWSFWVTRGEKRIHSCCPNLDIRDDQREISRQIFLTAIG FT DQARSGKRQMSENELWMYDQFRENITAPNAVRCNNTYQGCTCRGFSDGKKKGAQYAIAL FT HSLYDFKLKDLMSTMVEKKTKVVHAAMLFAPESMLVDEGPLPSVDGYYMKKNGKIYFGF FT EKDPSFSYIHDWEEYKKYLLGKPVSYQGNVFYFEPWQVRGDTMLFSIYRIAGVPRRSLS FT SQEYYRRIYISRWENMVVVPIFDLVESTRELVKKDLFVEKQFMDKCLDYIARLSDQQLT FT ISNVKSYLSSNNWVLFINGAAVKNKQSVDSRDLQLLAQTLLVKEQVARPVMRELREAIL FT TETKPITSLSDVLSLISKKLWKQFANKIAVGGFVGMVATLIGLYPRKVLTWAKGTSSGP FT ELCYENTHKTKVIVFLSVVYAIGGITLMRRDIRDGLVKKLCDMFDIKRGAHVLDVENPC FT RYYEINDFFSSLYSASESGETVLPDLSDVKAKSDKLLQQKKEIADEFLCAKFSNYSGSS FT TRTSPPSVVGSSRSGLGLLLEDSNVLTQARVGVSRKVDDEEIMEQFLSGLIDTEEEIDG FT IVSAFSVECERGETSGTKVLCKPLTPPGFENVLPTVKPLFNKGKTIKSTDYFQVMGGER FT LPKRPVVSGDDSVDARKEFLYYLDAERVAQNDEIMSLYRDYSRGVIRTGGQNYPHGLGV FT WDVEMKNWCIRPVVTEHAYVFQPDKRMDDWSGYLEVAVWERGMLVNNFAVERKSDYVIV FT CDQTYLCNNRLILDNLSALDLGPIDCSFELVDGVPGCGKSTMIVNSANPCVDVVLSTGR FT AATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGCLTGDVLHFDEALMAHAGMVYFC FT AQIARAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDVVTEKRETYRSPADVAAVLN FT KFYTGDVRTHNATANSMAVRKIVSKEQVSLKPGAQYITFLQSEKKELMNLLALRKVAAK FT VSTVHESQGETFKDVVLVRTKPTDDSIARGREYMIVALSRHTQSLVYETVKEDDVSKEI FT RESAALTKAALARFFVTETVL" FT CDS 5305..6063 FT /codon_start=1 FT /product="movement protein" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:E7CL02" FT /protein_id="ADU05354.1" FT /translation="MEDKSLVTLKKKTFEVSKFSNLGAIELFVDGRRKRPKYFHRRRET FT VLNHVGGKKSEHKLDVFDQRDYKMIKSYAFLKIVGVQLVVTSHLPADTPGFIQIDLLDS FT RLTEKRKKGKTIQRFKARACDNCSVAQYKVEYSISTQENVLDVWKVGCISEGVPVCDGT FT YPFSIEVSLIWVATDSTRRLNVEELNSSDYIEGDFTDQEVFGEFMSLKQVEMKTIEAKY FT DGPYRPATTRPKSLLSSEDVKGASKKKNSS" FT CDS 6088..6498 FT /codon_start=1 FT /product="16K protein" FT /note="silencing suppressor" FT /db_xref="InterPro:IPR007968" FT /db_xref="UniProtKB/TrEMBL:E7CKY7" FT /protein_id="ADU05355.1" FT /translation="MTCVLKGCVNEVTVLGHETCCIGHANKLRKQVADMVGVTRRCAEN FT NCGWFVCVVINDFTFDVYNCCGRSHLEKCRKRVEARNREVWKQIQRARKDTFATAKKSH FT NSKSQKREREFGTPKRFLRDDIPFGIDQLFAF" XX SQ Sequence 6734 BP; 1959 A; 1108 C; 1744 G; 1923 T; 0 other; cgcggtagaa cgtgctaatt ggattttggt gagaacgcgg tagaacgtac ttatcaccag 60 cagttttatt ttgtttttct ttttggttta atctatccag cttagtaccg agtgggggaa 120 agtgactggt gtgcctaaaa cctttttctt tgatattttg ttaagttcat acagatataa 180 tggcaaacgg taacttcaag ttgtctcaat tgcttaatgt ggacgagatg tctgctgagc 240 aaaggagtca cttctttgac ttgatgctga ctaaacctga ttgcgagatc gggcaaatga 300 tgcaaagagt tgttgttgac aaagtcgatg acatgcttag agaaagaaag actaaagatc 360 cggtgattgt tcatgaagtt ctttcgcaga aagaacagaa caaactaatg gaaatttatc 420 ctgaattcaa tatcgtgttc aaagacgaca aaaacatggt tcacgggttt gcggctgcag 480 aacgaaaact acaagcttta ttgcttttag atagggttcc tgctctgcaa gaggttgatg 540 acattggtgg tcaatggtcg ttttgggtta ctagaggtga gaagaggatt cattcctgtt 600 gtccaaatct ggatattcgt gacgatcaga gagaaatttc tcggcagata tttctaactg 660 caattggcga tcaggccagg agtggtaaga gacagatgtc ggagaacgag ctgtggatgt 720 acgatcaatt tcgagagaat attaccgcac ctaacgctgt taggtgtaat aatacatatc 780 aaggttgtac atgtagagga ttttctgatg gtaagaagaa aggtgcgcag tatgctattg 840 ctttacatag tttgtatgac ttcaagttga aagacttgat gtctacaatg gttgagaaaa 900 agacaaaagt ggtacatgct gctatgcttt ttgctcctga gagtatgcta gtggacgagg 960 gtccattacc ttctgttgat ggttactaca tgaaaaagaa tgggaagatc tacttcggtt 1020 tcgaaaagga tccttctttt tcttatattc atgattggga agagtacaag aaatatctac 1080 tgggaaagcc agtgagttac caagggaacg tgttctactt cgaaccgtgg caagtgagag 1140 gagatacaat gctattttca atctacagga tagctggagt tccgaggcgg tctctttcat 1200 cacaagagta ctaccgaaga atatatatca gtagatggga aaacatggtt gttgtcccga 1260 ttttcgattt agtcgaatca acgcgagagt tagtcaagaa agacctgttt gtggagaaac 1320 agttcatgga caaatgtttg gactacatag ctaggttgtc tgaccagcag ttaaccataa 1380 gcaatgttaa gtcatacctg agttcaaata actgggtctt attcataaac ggggcggccg 1440 tgaagaacaa gcaaagtgta gattctcgag atttacagtt actggctcaa actttactag 1500 tgaaggaaca agtggcgaga cctgtcatga gagagttgcg tgaagcaatt ctgactgaga 1560 cgaaaccgat tacgtcattg tctgacgtac taagtctgat ctcaaaaaaa ctgtggaaac 1620 agttcgctaa caagattgca gtcggcggat ttgtcggtat ggtcgccaca ctaattggat 1680 tgtatccaag gaaggtgttg acctgggcga agggcacgtc aagcggtccg gaattatgtt 1740 acgaaaacac gcacaaaacc aaagtgatag tatttctgag tgttgtgtat gccattggag 1800 gaatcacgct tatgcgtcga gacatccgag atggactggt gaaaaaacta tgtgatatgt 1860 ttgatattaa acggggggcc catgtcttag acgttgagaa tccgtgccgc tattatgaaa 1920 tcaatgattt ctttagcagt ctgtattcgg cgtctgagtc cggtgagacc gttttgcctg 1980 acctatccga cgtaaaagct aagtctgata agctactaca acaaaagaaa gaaatcgctg 2040 atgagtttct ctgtgcaaaa ttttctaact attctggcag ttcgacgaga acttctccac 2100 cgtcagtggt cggttcatct cgaagtggac tgggtttgtt gttggaagac agtaacgttc 2160 taacccaagc tagagttgga gtttcaagaa aggtagatga tgaggagatc atggagcagt 2220 ttctaagtgg tcttattgac actgaagagg agattgacgg gattgtttca gccttttcgg 2280 ttgaatgtga aagaggggaa acaagcggta caaaggtgtt gtgtaagcct ttaacaccac 2340 caggatttga gaatgtgtta ccaactgtca aacctttgtt taacaaaggt aaaacgatca 2400 aaagtactga ttacttccag gtgatgggag gtgagaggtt accaaaaaga ccggttgtca 2460 gcggagacga ttctgtggat gctagaaagg agttcttgta ctatttagat gcagagagag 2520 ttgctcaaaa tgatgaaatc atgtctctgt atcgtgacta ttcaagagga gttattcgaa 2580 caggaggtca gaattatcca cacggactgg gagtgtggga tgtggagatg aagaactggt 2640 gtatacgtcc agtagtcact gaacatgctt acgtgttcca accagacaaa cgtatggatg 2700 actggtcggg atatttagaa gtggctgtct gggaacgtgg aatgttagtc aacaacttcg 2760 cagtcgaacg aaagagtgat tatgtcatag tatgcgatca gacttatctt tgcaataaca 2820 ggttgatctt ggacaattta agtgccctgg atctaggacc gatcgactgt tcttttgaat 2880 tagttgatgg tgtacctggt tgtggtaagt cgacaatgat tgtcaactca gctaatccct 2940 gtgtcgatgt ggttctttct actggaagag cagcaaccga cgacttgatc gagagatttg 3000 cgagcaaagg ttttccatgc aagttgaagc ggagggtgaa gacggtagac tcttttttga 3060 tgcattgcgt cgatggttgt ttaaccgggg acgtgttgca tttcgatgaa gcgctcatgg 3120 ctcatgctgg tatggtgtac ttctgcgctc aaattgcgag agcaaaaaga tgtatctgtc 3180 aaggagacca aaatcaaatt tccttcaaac ctagagtgtc tcaggttgac ctgagattct 3240 cgagtttagt cggaaaattt gatgttgtta ctgaaaaaag agagacgtac agaagtccgg 3300 ccgatgtggc cgcggtgttg aacaagttct atactggaga tgtcagaaca cataacgcaa 3360 ctgctaattc gatggcagtg aggaagattg tgtcgaagga acaggtttct ctgaaacctg 3420 gtgcccaata cataactttc cttcaatctg agaagaagga gttgatgaat ctgttggcat 3480 tgaggaaagt ggcagctaag gtgagcacag tgcacgagtc acaaggagaa acattcaaag 3540 atgtagtcct agttaggacg aaacctacgg atgattcaat tgctagggga cgtgagtaca 3600 tgatcgtggc gttgtcgcgt cacacacaat cgcttgtgta cgagacggtt aaggaggatg 3660 acgtgagcaa agagattaga gaaagtgctg cgcttacaaa ggcggctctg gcaagatttt 3720 tcgttacgga aaccgtctta tgacggtttc ggtctaggtt tgatgttttc agacatcatg 3780 aggggccttg cgctgtccca gattcaggta cgattacgga cttggaaatg tggtatgacg 3840 ctttgtttcc tggaaattca ttaagagact caagcctaga cgggtatctg gtggcaacga 3900 ctgactgcaa cctgcggtta gacaatgtta caattaagag tggaaattgg aaagacaagt 3960 ttgctgaaaa agaaacgttt ctgaaaccgg ttattcgtac tgcgatgcct gataaaagga 4020 agactactca gttggagagt ttgttggcat tgcaaaaaag gaaccaagca gcacctgatc 4080 tacaagagaa tgtgcatgca acggtcctga tcgaagagac gatgaagaag ttgaaatcag 4140 ttgtctacga tgtgggaaag attcgggctg atcctattgt taacagagct cagatggaga 4200 gatggtggcg gaaccaaagt acagcagttc aggctaaggt ggtagcagac gtgcgagaat 4260 tacatgagat agactattcg tcttacatgt atatgatcaa gtcggatgtg aaacctaaga 4320 ctgatctaac accgcaattt gaatattctg ctctgcagac tgttgtgtat catgagaagt 4380 tgattaactc gttgtttggt ccaattttca aagagataaa tgaacgcaag ttggatgcta 4440 tgcaaccaca ctttgtgttc aatacaagga tgacgtcgag cgacctaaac gatcgagtga 4500 agtttttgaa cacagaggcg gcttacgact ttgtcgagat agacatgtct aaatttgaca 4560 agtcggcaaa tcgttttcac ttacagttgc agttggagat ctacaggttg tttgggttag 4620 atgagtgggc ggctttcctc tgggaggtgt cgcacactca aactactgtg agagacattc 4680 aaaatggcat gatggcacat atctggtacc aacaaaagag tggagatgct gatacttata 4740 atgcaaattc ggacaggacg ctgtgtgcgc ttctgtctga gttaccgtta gagaaggcag 4800 tcatggttac gtatggtgga gatgattcgt tgatagcgtt tcctagagga acgcaattcg 4860 tcgacccatg tccaaagttg gctactaagt ggaattttga gtgcaagatt tttaagtacg 4920 acgtcccaat gttttgcggg aagtttttac ttaagacgtc gtcatgttac gaatttgtgc 4980 cagatccggt taaagttctg acgaagttgg ggaaaaagag cataaaggat gtgcaacatt 5040 tagctgagat ttacatctca ctgaatgatt ctaacagagc tcttgggaat tatatggttg 5100 tatccaaact ttccgagtct atttcagatc ggtatttgta caagggtgat tctgttcatg 5160 cgctgtgtgc gctatggaag catattaaga gttttacagc tctgtgtaca ttattccggg 5220 acgaaaaaga taaggaattg aatccggctc aggttgattg gaagagagca cagagggccg 5280 tgtcaaactt ttacgactgg taagatggaa gacaagtcat tggttacgct taagaagaag 5340 actttcgaag tttcgaagtt ttcgaactta ggtgctattg aactgtttgt ggatggtagg 5400 agaaagagac cgaagtattt ccatagaaga agagagactg tcctaaatca tgttggtgga 5460 aagaagagtg aacataagtt agacgttttt gatcagaggg actacaaaat gattaaatct 5520 tacgcgtttt tgaagatagt aggtgtgcaa cttgttgtta catcacatct acctgcagat 5580 acgcctgggt ttattcaaat cgatctgttg gattcgagac ttactgagaa aagaaagaaa 5640 ggaaagacta ttcagagatt caaagctcga gcttgcgata attgttcagt tgcgcagtac 5700 aaggttgaat acagtatttc tacacaagag aatgtactcg atgtctggaa ggtgggttgt 5760 atttctgaag gcgttccggt ctgtgacggt acataccctt tcagtattga agtgtcgctc 5820 atttgggttg ctactgattc gactaggcgt cttaatgtgg aagaactgaa cagttcagat 5880 tacattgaag gcgattttac cgatcaggag gttttcggtg agttcatgtc tttgaaacaa 5940 gttgagatga agacgattga ggcgaagtat gacggtcctt acagaccagc tactactaga 6000 ccaaaatcat tgttgtcgag tgaagatgtt aagggagcgt ctaaaaagaa aaactcgtct 6060 taatgcataa agaaatttat tgtcactatg acgtgtgtac tcaagggttg tgtgaatgaa 6120 gtcactgttc ttggtcacga gacgtgttgt attggtcatg ctaacaagtt gcgaaagcaa 6180 gttgctgaca tggttggtgt cacgcgtagg tgtgcggaaa ataattgtgg atggtttgtc 6240 tgtgttgtta tcaatgattt tacttttgat gtgtataatt gttgtggccg tagtcacctt 6300 gaaaagtgtc gtaagcgtgt cgaagcgaga aatcgagaag tctggaaaca gattcaacga 6360 gctcggaaag atacgtttgc tacagctaaa aagtctcata attcgaaatc ccaaaaaagg 6420 gagagagaat ttgggacacc aaaaagattt ttaagagatg atattccgtt tggaattgat 6480 caattgtttg ctttttgatt ttgtattaaa ttgttatctg tttctgtgta tagactgttt 6540 gagattggcg cttgaccgac tcattgtctt accatagggg aacggacttt gtttgtgttg 6600 ttattttatt tgtattttat aaaaattctc agtgatctga aaaggcttta ttgccaagag 6660 attgctgggg ggtgagtaag tacttttaaa gtgatgatgg ttacaaaggc aaaaggggta 6720 aaacccctcg ccta 6734 //