ID   HM188540; SV 1; linear; genomic RNA; STD; VRL; 1801 BP.
XX
AC   HM188540;
XX
DT   31-JAN-2013 (Rel. 115, Created)
DT   12-DEC-2013 (Rel. 119, Last updated, Version 2)
XX
DE   Rice black streaked dwarf virus isolate JSYC59 segment S10, complete
DE   sequence.
XX
KW   .
XX
OS   Rice black streaked dwarf virus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus.
XX
RN   [1]
RP   1-1801
RX   DOI; 10.1007/s00705-013-1766-8.
RX   PUBMED; 23807744.
RA   Yin X., Zheng F.Q., Tang W., Zhu Q.Q., Li X.D., Zhang G.M., Liu H.T.,
RA   Liu B.S.;
RT   "Genetic structure of rice black-streaked dwarf virus populations in
RT   China";
RL   Arch. Virol. 158(12):2505-2515(2013).
XX
RN   [2]
RP   1-1801
RA   Zhu Q.;
RT   ;
RL   Submitted (04-MAY-2010) to the INSDC.
RL   Department of Plant Pathology, Shandong Agricultural University, No. 61,
RL   Daizong Street, Tai'an, Shandong 271018, China
XX
DR   MD5; 6138fdc8f706b0f33accca560a18c605.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1801
FT                   /organism="Rice black streaked dwarf virus"
FT                   /segment="S10"
FT                   /host="maize"
FT                   /isolate="JSYC59"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collection_date="20-Jul-2008"
FT                   /PCR_primers="fwd_name: P1, fwd_seq: aagtttttttcctcaccca,
FT                   rev_name: P2, rev_seq: gacaatagctgaatttcccccta"
FT                   /db_xref="taxon:10990"
FT   5'UTR           1..21
FT   CDS             22..1698
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:Q9IHZ4"
FT                   /db_xref="InterPro:IPR008618"
FT                   /db_xref="UniProtKB/TrEMBL:Q9IHZ4"
FT                   /protein_id="ADI33255.1"
FT                   /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNNLFHE
FT                   LNIVKSPHVASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKDHIRSFFQNEHQ
FT                   PIFQTLTNNDLSEEFVGVTTFGLSLFATSKLDAEQIERVQIETLTEGNITLKPFSADGL
FT                   EVILDDSYIGIVGKIPGLEVHKLLDKCCREVPAQMGILTDEVKLLMRTGKLRIDGGYDF
FT                   NCPASTTDVTHYGGYDQFSRQMFERLNLFYNISLSIIPVSALKTVHLFEKELSVLDADK
FT                   SLLEQTWSAVASFVETWQVKSKVKADDPDEYELTSLSTLRTNYDGTSASSPFTDKKFID
FT                   WYIKTFSKTEKGSSLRRNELEEKSATSTSTTVKKVKIHFSVQYFDEFKVNGHEKSVVVQ
FT                   THKGEMTLDYYRKIGEVLSAIWKRGKSLAVPCFDYIKLGVEKAFHLAPVILKKYNLTID
FT                   DIINFIDKGPSYLAKLDKIDDWSLISKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA
FT                   NNLLKSDRDRLLKKALSANVSSSNTSSHEHVQKIVLNKVTR"
XX
SQ   Sequence 1801 BP; 574 A; 334 C; 326 G; 567 T; 0 other;
     aagttttttt cctcacccat aatggctgac ataagactcg acatagcgcc cgatcttatc        60
     cataatggtg taccccagag actttccgat acaataattt tgaacaaccg accaacaatc       120
     actctgctat ctcatttcaa caatctattt catgaattaa acattgtcaa atcgccccac       180
     gttgcatctt cccaaactac cgttaatttg tacattcgta aacatttgtt gacccgactt       240
     catgatagac tgcaaaccgt agaaactagc actttaccca acatcacgca acttaaagac       300
     catattcgta gcttctttca aaatgaacat caacctattt ttcagaccct aacgaacaac       360
     gacctaagtg aagaatttgt aggtgtgact acttttggac taagcttatt tgctacctcc       420
     aaacttgatg ctgaacaaat agaacgtgta caaattgaga ccctaactga aggaaacatt       480
     actttgaagc ccttttccgc tgatggttta gaagtcattc tcgatgatag ttatattggt       540
     atagttggta aaattccagg tttagaagtt cataaattgc tagataagtg ttgtcgtgaa       600
     gttcctgctc aaatgggaat acttactgat gaagttaaac ttttaatgcg tactggtaaa       660
     ttaagaattg atggtggtta cgattttaat tgtcctgcaa gcactacgga tgttacacat       720
     tacggtggtt atgaccaatt ttcacgtcaa atgttcgaac gtttgaatct attttataat       780
     attagcctta gcataattcc cgtttcagct ttgaagacag ttcatttatt tgaaaaagaa       840
     ctaagtgttt tggatgcaga taaatcttta ctcgaacaaa cttggagcgc agtagcgtca       900
     tttgttgaaa cttggcaggt taaatctaaa gttaaagccg atgatccaga tgaatatgaa       960
     ttaaccagtt tgtccacgtt gcgcactaat tacgacggca cctccgcttc tagtcctttc      1020
     acagataaga aattcattga ctggtacatt aagactttct ctaaaactga gaaaggatcg      1080
     tctttgcgtc gaaacgaatt agaagagaaa agtgctacta gtacttcaac tacagtaaag      1140
     aaggttaaaa ttcatttctc cgttcaatat tttgatgaat ttaaggttaa tggacatgag      1200
     aaaagcgttg tagttcaaac tcataaaggc gaaatgacgt tagattatta tcgtaaaatt      1260
     ggcgaagtgt taagtgctat ttggaaacgt ggtaaatctt tagctgtacc ttgttttgat      1320
     tacattaagc ttggcgttga gaaagcattt catttagcac ccgtaattct gaagaagtat      1380
     aacttgacta ttgatgatat tatcaacttc attgataaag gaccttctta tttagctaaa      1440
     ttagacaaga ttgatgattg gtctttaatt tcaaagctta tcattaccag cgttttacct      1500
     aatatcattc aagctgttta caaaaccgat ccaagtaata atgttatgaa ctcagtaatt      1560
     atcagtagag cgaacaattt gttgaaatct gatagggaca ggctattaaa gaaggcactt      1620
     tccgccaacg tttcttcttc caacacatct agtcatgaac atgtacagaa gatagtatta      1680
     aataaagtga caagatgacc actgggagta catccttagt gcgactagtt cagtgctgtg      1740
     cgatcttcag ttcattatcg atgccgagtg acgacggcta gggggaaatt cagctattgt      1800
     c                                                                      1801
//