ID   HM188468; SV 1; linear; genomic RNA; STD; VRL; 1801 BP.
XX
AC   HM188468;
XX
DT   31-JAN-2013 (Rel. 115, Created)
DT   12-DEC-2013 (Rel. 119, Last updated, Version 2)
XX
DE   Rice black streaked dwarf virus isolate SDJNi35 segment S10, complete
DE   sequence.
XX
KW   .
XX
OS   Rice black streaked dwarf virus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus.
XX
RN   [1]
RP   1-1801
RX   DOI; 10.1007/s00705-013-1766-8.
RX   PUBMED; 23807744.
RA   Yin X., Zheng F.Q., Tang W., Zhu Q.Q., Li X.D., Zhang G.M., Liu H.T.,
RA   Liu B.S.;
RT   "Genetic structure of rice black-streaked dwarf virus populations in
RT   China";
RL   Arch. Virol. 158(12):2505-2515(2013).
XX
RN   [2]
RP   1-1801
RA   Zhu Q.;
RT   ;
RL   Submitted (03-MAY-2010) to the INSDC.
RL   Department of Plant Pathology, Shandong Agricultural University, No. 61,
RL   Daizong Street, Tai'an, Shandong 271018, China
XX
DR   MD5; 66beef70cc9829ab393c991314c83038.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1801
FT                   /organism="Rice black streaked dwarf virus"
FT                   /segment="S10"
FT                   /host="maize"
FT                   /isolate="SDJNi35"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collection_date="20-Jul-2008"
FT                   /PCR_primers="fwd_name: P1, fwd_seq: aagtttttttcctcaccca,
FT                   rev_name: P2, rev_seq: gacaatagctgaatttcccccta"
FT                   /db_xref="taxon:10990"
FT   5'UTR           1..21
FT   CDS             22..1698
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:L7N717"
FT                   /db_xref="InterPro:IPR008618"
FT                   /db_xref="UniProtKB/TrEMBL:L7N717"
FT                   /protein_id="ADI33183.1"
FT                   /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNNLFHE
FT                   LNIVKAPHVASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKDHIRSFFQNEHQ
FT                   PIFQTLTNNDLSEEFVGVTTFGLSLFATSKLDAEQIERVQIETLTEGNITLKPFSADGL
FT                   EVILDDSYIGIVGKIPGLEVHKLLDKCCREVPAQMGILTDEVRLLMRTGKLRIDGGYDF
FT                   NCPASTTDVTHYGGYDQFSRQMFERLNLFYNISLSIIPVSALKTVHLFEKELSVLDADK
FT                   SLLEQTWSAVASFVETWQVKSKVKADDPDEYEMTSLSTLRTNYDGTSTSSPFTDKKFID
FT                   WYIKTFSKTEKGSSLRRNELEEKSATSTSTTVKKVKIHFSVQYFDEFKVNGHEKSIVVQ
FT                   THKGEMSLDYYRKIGEVLSAIWKRGKSLAVPCFDYIKLGVEKAFHLAPVIMKKYNLTID
FT                   DIINFIDKGPSYLAKLDKIDDWSLISKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA
FT                   NNLLKSDRDRLLKKALSANVSSSNTSSHEHTQKIVLNKVTR"
XX
SQ   Sequence 1801 BP; 582 A; 338 C; 323 G; 558 T; 0 other;
     aagttttttt cctcacccat aatggctgac ataagactcg atatagcgcc cgatcttatc        60
     cataatggtg taccccagag actttccgat acaataattt taaacaaccg accaacaatc       120
     actctgttat ctcatttcaa caatctattt catgaattaa acattgtcaa agcgccccac       180
     gttgcatctt cccaaactac cgttaatttg tacattcgca aacatttgtt gacacgactt       240
     cacgatagac tacaaaccgt agaaactagc accctaccca acatcacaca acttaaagac       300
     catattcgca gtttctttca aaatgaacac caacctattt ttcagaccct aacgaacaac       360
     gacctaagcg aagaatttgt aggtgtgact acttttggac taagcttatt tgctacctcc       420
     aaacttgatg ctgaacaaat agaacgtgtg caaattgaga ccttaactga aggaaacatt       480
     acgttgaagc ccttttccgc tgatggttta gaagtcattc tcgatgatag ttatattggc       540
     atagttggca aaattccagg tttagaagtt cataaattgt tagataaatg ttgtcgcgaa       600
     gttcctgctc aaatgggaat acttactgat gaagttagac ttttaatgcg tactggtaaa       660
     ttacgaattg atggtggtta tgatttcaat tgtcccgcaa gcactacaga cgttactcac       720
     tacggtggtt atgaccaatt ttcacgtcaa atgttcgaac gtttgaatct attttataat       780
     attagtctca gcataattcc cgtttcagct ctgaaaacag ttcatttatt tgaaaaagaa       840
     ttaagtgttt tggatgcaga taaatctttg ctcgaacaaa cttggagtgc agtagcgtca       900
     tttgttgaaa cttggcaagt taaatctaaa gttaaagctg atgatccaga tgaatacgaa       960
     atgaccagtt tgtccacttt gcgcactaat tacgatggta cttctacttc tagtcctttt      1020
     acagataaga aattcattga ctggtatatt aagacttttt ctaaaactga gaaaggatcg      1080
     tctttgcgtc gaaatgaatt agaagagaaa agtgccacta gtacatcaac tacagtaaag      1140
     aaggttaaaa ttcatttttc cgttcaatat tttgacgaat ttaaagttaa tggacacgaa      1200
     aaaagcattg tagttcaaac tcataaaggt gaaatgtcat tagattatta tcgtaaaatt      1260
     ggcgaagtgt tgagtgcgat ttggaaacgc ggtaaatctt tggctgtacc ttgttttgat      1320
     tacattaaac ttggcgttga aaaagcattt catttggcac cagtaattat gaagaagtat      1380
     aacttgacga tcgacgatat tatcaacttc attgataaag gaccttccta tttggctaag      1440
     ttggacaaaa ttgatgattg gtctttaatt tcaaagctta ttattactag tgttttacct      1500
     aacatcattc aagctgttta taaaaccgat cctagtaata atgttatgaa ctcagtaatt      1560
     atcagtagag cgaataactt gctgaaatct gatagggaca ggctattaaa gaaggcactt      1620
     tccgccaacg tttcttcctc caacacatcc agtcatgagc acacacagaa gatagtatta      1680
     aacaaagtaa caagatgacc actgggagta catcattagt gcgactagtt cagtgctgtg      1740
     cgatcttcag ttcattatcg atgccgagtg acgacggcta gggggaaatt cagctattgt      1800
     c                                                                      1801
//