ID   HM171307; SV 1; linear; genomic RNA; STD; VRL; 1098 BP.
XX
AC   HM171307;
XX
DT   16-JAN-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 4)
XX
DE   Cassava brown streak Uganda virus-[MW:Mangochi 66:2009] coat protein gene,
DE   partial cds.
XX
KW   .
XX
OS   Ugandan cassava brown streak virus-[MW:Mangochi 66:2009]
OC   Viruses; Riboviria; Potyviridae; Ipomovirus.
XX
RN   [1]
RP   1-1098
RX   DOI; 10.1099/vir.0.026922-0.
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(Pt 4):974-987(2011).
XX
RN   [2]
RP   1-1098
RA   Bagewadi B., Yadav J.S., Patil B.L., Changadeya W., Mkumbira J.,
RA   Fauquet C.M.;
RT   ;
RL   Submitted (30-APR-2010) to the INSDC.
RL   Iltab, Donald Danforth Plant Science Center, 975 N Warson Rd, Saint Louis,
RL   MO 63132, USA
XX
DR   MD5; f2033a6d353506b3ba9b4d84431d9aff.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1098
FT                   /organism="Ugandan cassava brown streak virus-[MW:Mangochi
FT                   66:2009]"
FT                   /host="Manihot esculenta cv. Manyokola"
FT                   /isolate="MW:Man66:09"
FT                   /mol_type="genomic RNA"
FT                   /country="Malawi:Mangochi Dist., Southern Malawi"
FT                   /collection_date="2009"
FT                   /PCR_primers="fwd_name: F1_MLB3_CP, fwd_seq:
FT                   gcaattgacaaggatgagattgaagctg, rev_name: R1_MLB3_CP,
FT                   rev_seq: ttcaatagcagcacctgcatagctatgc"
FT                   /PCR_primers="fwd_name: F3_Tan_CP, fwd_seq:
FT                   gccttaaatcaggaggaaatagaagcag, rev_name: R3_Tan_70, rev_seq:
FT                   ttcaattgcggcaccactgtaactgtgc"
FT                   /note="PCR_primers=rev_name: R3_Tan_GQ, rev_seq:
FT                   ttcgatagcggcacccgcgtagctgtgc"
FT                   /db_xref="taxon:980531"
FT   CDS             <1..>1098
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:E7CIL3"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:E7CIL3"
FT                   /protein_id="ADV16255.1"
FT                   /translation="ALNQEEIEAEITALKKLWKLNGPTSTRSPFEARRLRAPQVERVNE
FT                   LLQILKNEGLQTKKRPCGEPDDGEVIDDDSDDGSNPNYGKKVDYSQDYQQVDPRKLKFK
FT                   IRGDGSVIGRDDIDKIPTNALEIKKTFKPPKVSQSAYIWIPRSQRDNLTPEVIQNFLAY
FT                   IPPSHAIDNQLASGIEVENWAIEVAKAYGVNIQEFYRTVLPAWIVNCIVNGTSDERKNE
FT                   KSWRAVELDSQGEDVDDFEYPMEPMYKFALPTMRKIMRNFSSQAILMYQNSVAAGKAFV
FT                   IKAARNAGYTNIENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRTKTRLFALSAPGDD
FT                   NNVDKERHTTHDVSANRHSYSGAAIE"
XX
SQ   Sequence 1098 BP; 373 A; 178 C; 272 G; 275 T; 0 other;
     gccttaaatc aggaggaaat agaagcagag atcactgctt taaagaagct gtggaaatta        60
     aatggaccga caagcacacg tagtccattt gaagctagga gattgagagc cccacaagtt       120
     gagcgtgtga atgagttact tcagatactg aagaatgaag gattgcaaac aaagaagagg       180
     ccatgcggag aaccagatga tggggaagtg atagatgatg atagtgatga tggtagtaat       240
     ccgaattatg gaaagaaagt tgattacagt caggattatc agcaagttga tccaagaaag       300
     ctaaaattca agattagagg agatgggagt gttattggac gggatgacat tgataaaatt       360
     ccaactaatg ctcttgagat caagaagaca tttaaacctc caaaggtgtc acagtcagct       420
     tacatttgga ttccgcgctc tcaaagggat aatctaactc ctgaagtaat tcagaatttc       480
     ctggcatata tacctccgtc tcatgctata gacaaccaac ttgcttcagg aattgaagtt       540
     gagaattggg caattgaggt tgctaaagca tatggagtta atatacagga attttatcgc       600
     acagtcttac cagcttggat agtgaattgt atagtgaacg ggactagcga tgaaaggaaa       660
     aatgagaagt catggcgagc agttgagctg gattctcagg gagaagatgt tgatgatttc       720
     gagtatccaa tggagccaat gtataaattc gcattgccaa ccatgaggaa gattatgaga       780
     aacttctcta gccaagctat cctcatgtat cagaatagtg ttgctgcagg taaggcgttt       840
     gtaataaaag ctgctagaaa tgctgggtac acaaatattg agaataaatg gctaggtata       900
     gattttcttg ccgaagctca attatctcag agtcaacttg atatcaagca tcagattctg       960
     gcagcgaatg ttggtagaac aaagacaagg ctgttcgcgt tatcagctcc tggggatgat      1020
     aacaatgttg ataaagaaag gcacacgaca cacgatgtca gtgcaaacag gcacagttac      1080
     agtggtgccg caattgaa                                                    1098
//