ID   HM171300; SV 1; linear; genomic RNA; STD; VRL; 1098 BP.
XX
AC   HM171300;
XX
DT   16-JAN-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 4)
XX
DE   Cassava brown streak Uganda virus-[Malawi:Zomba 1:2009] coat protein gene,
DE   partial cds.
XX
KW   .
XX
OS   Ugandan cassava brown streak virus-[Malawi:Zomba 1:2009]
OC   Viruses; Riboviria; Potyviridae; Ipomovirus.
XX
RN   [1]
RP   1-1098
RX   DOI; 10.1099/vir.0.026922-0.
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(Pt 4):974-987(2011).
XX
RN   [2]
RP   1-1098
RA   Bagewadi B., Yadav J.S., Patil B.L., Changadeya W., Mkumbira J.,
RA   Fauquet C.M.;
RT   ;
RL   Submitted (30-APR-2010) to the INSDC.
RL   Iltab, Donald Danforth Plant Science Center, 975 N Warson Rd, Saint Louis,
RL   MO 63132, USA
XX
DR   MD5; 22d33592cce8d35b1918f08c612ec7b0.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1098
FT                   /organism="Ugandan cassava brown streak virus-[Malawi:Zomba
FT                   1:2009]"
FT                   /host="Manihot esculenta"
FT                   /isolate="MW:Zom1:09"
FT                   /mol_type="genomic RNA"
FT                   /country="Malawi:Zomba Dist., Southern Malawi"
FT                   /collection_date="2009"
FT                   /PCR_primers="fwd_name: F1_MLB3_CP, fwd_seq:
FT                   gcaattgacaaggatgagattgaagctg, rev_name: R1_MLB3_CP,
FT                   rev_seq: ttcaatagcagcacctgcatagctatgc"
FT                   /PCR_primers="fwd_name: F3_Tan_CP, fwd_seq:
FT                   gccttaaatcaggaggaaatagaagcag, rev_name: R3_Tan_70, rev_seq:
FT                   ttcaattgcggcaccactgtaactgtgc"
FT                   /note="PCR_primers=rev_name: R3_Tan_GQ, rev_seq:
FT                   ttcgatagcggcacccgcgtagctgtgc"
FT                   /db_xref="taxon:980524"
FT   CDS             <1..>1098
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:E7CIK6"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:E7CIK6"
FT                   /protein_id="ADV16248.1"
FT                   /translation="ALNQEEIEAEIAALKKLWKYNGPTKTRSPFEARRLRAPQVERVNE
FT                   LLQKLKNEGLQTKKRPCGEPDDGEVADDDSDDGDYQRSDKKVDTSQNGQRGDPRKSEFK
FT                   IGGDKSAIRWDDIDKIPTNALEIKKTFKPPKVSQSAYIWIPRSQRDNLTPDVIQNFLAY
FT                   VPPSHAIDNQLASGIEVENWANEVAKAYGINIQEFYRTVLPAWIVNCIVNGTSDERKNE
FT                   KSWRAVELNSQGEDVDDIEYPMEPMYKFALPTMRKVMRNFSSQAILMYQNSVAAGKAFV
FT                   IKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRTRTRLFALAAPGDD
FT                   NNVDKERHTTHDVSANRHSYSGAAIE"
XX
SQ   Sequence 1098 BP; 369 A; 180 C; 282 G; 267 T; 0 other;
     gccttaaatc aggaggaaat agaagcagag attgctgctt tgaagaagct gtggaaatac        60
     aatggaccga caaaaacgcg tagtccattc gaagctagga gactgagagc cccacaagtt       120
     gagcgtgtga atgagttact tcagaaactg aagaatgaag ggctgcaaac aaagaagaga       180
     ccatgcggag aaccagatga tggggaagtg gcagatgatg atagtgatga tggtgattat       240
     cagagatctg ataagaaagt tgataccagt cagaatggtc agcggggtga tccaagaaag       300
     tcggaattca agattggagg agataaaagt gccattagat gggatgacat tgataaaatt       360
     ccaactaatg ctcttgagat caagaagaca tttaagcctc caaaggtgtc acagtcggct       420
     tacatttgga ttccgcgctc tcaaagggac aatctaactc ctgatgtaat tcagaatttc       480
     ctggcatatg tacctccgtc tcatgctata gataaccaac ttgcttcagg aattgaagtt       540
     gagaattggg caaatgaggt tgctaaagca tatggaatca atatacagga attttatcgc       600
     acagttttgc cagcttggat agtgaattgt atagtgaacg gaactagcga tgaaaggaaa       660
     aatgagaagt catggcgagc agttgagctg aattctcaag gggaagacgt agatgatatc       720
     gagtatccaa tggagccaat gtataaattt gcattgccaa ccatgaggaa ggttatgaga       780
     aacttctcta gccaagctat cctcatgtat cagaatagtg ttgctgcagg taaggcgttt       840
     gtaataaaag ctgctagaaa tgctgggtat acaagtattg agaataaatg gctaggtata       900
     gattttcttg ccgaagctca attatctcag agtcaacttg atatcaagca tcagattctg       960
     gcagcgaatg ttggtagaac aaggacaagg ctgtttgcat tagcagctcc tggggatgat      1020
     aacaatgttg ataaagaaag gcacacgaca cacgatgtca gtgcaaatag gcacagttac      1080
     agtggtgccg caattgaa                                                    1098
//