ID HM125552; SV 1; linear; genomic RNA; STD; VRL; 3823 BP. XX AC HM125552; XX DT 01-MAY-2011 (Rel. 108, Created) DT 01-MAY-2011 (Rel. 108, Last updated, Version 1) XX DE Rice ragged stunt virus isolate GD segment 4, complete sequence. XX KW . XX OS Rice ragged stunt virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Oryzavirus. XX RN [1] RP 1-3823 RA Chen Q., Wu M.A., Wu Z.J., Xie L.H.; RT "Phylogenetic evidence for origin and evolution of rice rigged stunt RT virus"; RL Unpublished. XX RN [2] RP 1-3823 RA Chen Q., Wu M.A., Wu Z.J., Xie L.H.; RT ; RL Submitted (15-APR-2010) to the INSDC. RL Institute of Plant Virology, Fujian Agricultural and Forestry University, RL Fuzhou, Fujian 350002, P.R. China XX DR MD5; f9930d9b80c04b45dc4f5280e0b3f3e4. XX CC GenBank Accession Numbers HM125549-HM125558 represent sequences CC from the 10 segments of Rice ragged stunt virus. XX FH Key Location/Qualifiers FH FT source 1..3823 FT /organism="Rice ragged stunt virus" FT /segment="4" FT /host="rice" FT /isolate="GD" FT /mol_type="genomic RNA" FT /country="China:Xinyi, Guangdong province" FT /collection_date="2007" FT /db_xref="taxon:42475" FT CDS 12..3779 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="RRSVs4gp1; P4" FT /db_xref="GOA:F4YTT9" FT /db_xref="InterPro:IPR007097" FT /db_xref="UniProtKB/TrEMBL:F4YTT9" FT /protein_id="AEC32894.1" FT /translation="MTLLVITEQTIHSLCLDHGETNQIIAEIKQLEKPELLFSYITDAE FT PLATGEVFVGPDICGNCITHTFRVPDYVAKPPPYDSKRVYYPYSYTCLGFDSHPYDYLL FT TLDTKSIFQAIRKITLTRKLSIATQSDLDLIILKKLTTQSNCQSRVSSIWRQCVAACLA FT FEPQIQNNNSTQSSNLNNLVKRMFATLLKPIGRLPFYERRRNFVWEEEVSCPTILPLLL FT YSIQNLVTQFCAGVINRMEMILAFQYYLDCGVTAYQDEKLRLQKLIRNWLREGLAKFSK FT IAMPNWTVSGVISCTTVKPIMITTHEAREIKSAREAREASVPTYLLQYINHAIHKAISP FT YQTHQYWQATRVFANDGTYFASVAALTLNKAVRPRIEETTVKYPNSRYLTMNKEHIAVT FT LPNETDTNFGLACQFVKQFIPRLVTRLKNTNFQEEFIAFLTSSSSGKDFEDAAIATMTR FT TIQRVAKKRIVAAGLESRSYLNQQFIADECLAAAKLVGRTQIGRRQRAIAGVNNTRSLL FT GFPPMLMLKALLDMTGTTSSGKQMGNYLDLLIPLGLSPYANVIFNSADVDAMDASVQAS FT VQQIMWHFVVYIALQLERTDYFAFTSGDEVIYELVEGKDSVATSIHMSGLARSCLRAMH FT LLQPQNCVLNDDIVGELVTREPTFPSGQPFTTVHHTFTLSNAIMGGTLRVTNLTNQPST FT LLNLTVQGDDTRTINYGPKGCIEKCIDDQSSFVSDWGFKVSNETSSHTSEYLQQRVSCG FT TFVGYPDRVSLFAAERPKEGKTMKEKMSEIWSLVTDLGCRSRDPQRLVRLMYAIGVACC FT CRLTIRTERLVAQEFIASEVGRACCAEILVPKVAARADRGVMLRYHYPISALWLEEGGQ FT LPPLATKRRGGTWTCFPSYYFQRGDSNRYWYWDVSLTEEKWITTVEMRSDWDSNNAIEL FT IDDEILEAYATRYALAALGLNKTRQMERLRLSEESTIFDVEQLASGLNAYRNLSKIAIS FT HRASERLKNAGVELPDSVLYSRHTQSRIQDAILKAQMTEKEEIEMSLYFFKDKGYLRSL FT RELVKSKSGDLAMIHRCEWGERVTILESSIFDVVSTTPLSMEVYPGSIMSFILCYTGLK FT GAHSGQLAGLVGLLQGKYGGGKISELQFSIAKKIYLTKPYLLNEFIIACGLGGEAELAL FT KNALHAFEMLRGVEFSTVHTPRQFFFGVDSGVTLGNHLDYPNGFPGTRIELAAHLLLAM FT NFLSSNAQSCTGRSIRVRVPRGMWSRCTNF" XX SQ Sequence 3823 BP; 1084 A; 792 C; 926 G; 1021 T; 0 other; gataaatctc catgactcta ttagtgatca ccgagcagac catacattca ctgtgtctcg 60 accacggaga aactaaccag attatcgcgg agattaaaca acttgagaag ccagaactct 120 tattttcata tatcacggac gccgaacctt tagcaaccgg agaagtattt gtaggaccag 180 acatctgcgg caattgtata acccatactt tcagagttcc cgactacgtc gcgaaacccc 240 ctccttatga ttcgaagcgc gtgtattatc cgtactctta tacttgtttg ggcttcgata 300 gtcaccctta cgattatttg cttactttag atactaagtc aatattccaa gcaattcgga 360 aaattactct aacgcgtaag ctatcaattg ccacacagtc cgatctggat ctaattattt 420 taaagaagtt gactacacaa tcaaattgcc aatcgcgcgt gtctagtatt tggcgtcagt 480 gtgtagcagc atgcctagcg ttcgagcctc agatccaaaa caacaactct acccaatcgt 540 cgaacttgaa caacttagtc aagaggatgt tcgcaacatt gctaaaaccc atcggtcgcc 600 tacccttcta cgaacgcaga cgaaattttg tgtgggaaga agaggtgagt tgtcctacga 660 tactaccctt gctcctttac agtattcaga acctggtgac tcaattttgc gcgggagtga 720 taaacaggat ggaaatgatt ctagcctttc aatattatct agactgtggt gttacggcgt 780 atcaagacga aaagctcagg cttcagaaat tgattcggaa ttggttgcgc gagggattag 840 caaagttctc gaagatagcc atgccaaatt ggacggtttc gggagtcatc agctgtacga 900 cagtcaaacc tataatgatt actactcacg aggcgcggga aatcaaatca gcgagagagg 960 cgagggaggc gagcgttcca acttatttat tgcagtacat aaaccacgcc atccacaaag 1020 ctatcagccc gtatcagacc catcagtatt ggcaggctac gagagtgttc gcgaacgacg 1080 ggacgtattt cgcttcggtg gcggcactaa ctttgaacaa ggcggttcga ccgagaatag 1140 aggaaactac agtgaaatac ccgaactcac gttatttaac tatgaacaag gaacacatag 1200 cggtcacgct accgaacgag acggatacaa attttggtct ggcatgtcaa tttgtgaaac 1260 aatttatacc gcgactcgtg acgagattga agaatacgaa ctttcaagag gaattcatag 1320 cgttcctgac atcatcgagc tcaggcaaag acttcgaaga cgcagccatc gcaactatga 1380 cgcgaaccat tcaacgggtg gcgaagaaga gaatagtggc agcaggtcta gaatcgcgga 1440 gttatctcaa ccaacaattc atcgccgatg agtgcttagc cgccgcaaaa ttagtgggtc 1500 gcacccagat tggaaggaga cagagagcta ttgctggtgt caataatact cgttcactgt 1560 taggattccc tcctatgtta atgttaaaag cgttgctgga tatgacagga actacctcgt 1620 ccgggaaaca gatgggtaat tatttagatt tgttaattcc tctcggatta tcaccatacg 1680 ctaatgtgat tttcaattcg gcggatgtgg atgcaatgga tgctagtgtg caggcctcag 1740 ttcagcaaat aatgtggcat tttgttgtgt acatagcttt acaattggaa cgtacagatt 1800 attttgcttt tacctcggga gatgaagtga tatatgagct agttgaagga aaggattcag 1860 ttgctaccag tattcatatg agtggtcttg caagatcttg tttacgcgca atgcatttac 1920 ttcagccaca gaattgtgta ttgaacgatg acatcgtcgg ggagttagtc actcgtgagc 1980 ccacctttcc ttctggtcag ccgtttacga cagtccatca cacctttaca ttgtcaaatg 2040 ctatcatggg tggtactttg agagtgacca atctcaccaa tcagccatcg acactactta 2100 atctaacggt gcaaggggat gatacaagaa ccatcaacta tggacccaag ggttgcatcg 2160 aaaagtgcat tgatgatcaa tcgtctttcg tgagtgattg gggctttaaa gtctcgaacg 2220 agacgtcatc tcacacttcg gaatatttac aacagcgtgt ttcatgtggt acctttgtcg 2280 gatacccaga tcgagtttca ttatttgcag cagaacggcc aaaagaaggc aagacgatga 2340 aagagaagat gtcagaaatt tggagtttgg ttacggattt gggttgtcgc tctagagatc 2400 cgcagcgatt ggttcgattg atgtatgcta ttggagtagc gtgctgttgt cgattaacta 2460 taaggacaga gaggcttgta gcacaagagt tcatcgcatc agaggttggt cgagcatgct 2520 gtgctgagat tttagtgcca aaagttgcag caagggcgga tagaggtgta atgttgcggt 2580 accactaccc tatcagtgct ctttggttag aagaaggagg ccagctacca cctttagcga 2640 ctaaaagaag gggcggcact tggacgtgtt ttcccagtta ctacttccaa cgcggcgact 2700 ctaaccgata ttggtattgg gatgttagtc tcactgaaga gaagtggata actacagtgg 2760 agatgcgctc cgactgggac tcgaataacg ctatcgagct gatagatgat gagattcttg 2820 aagcatatgc cactagatat gctctggccg cgttggggct caataaaacc cgccagatgg 2880 aaaggttgcg attgagcgaa gaatcaacta tattcgatgt tgagcagcta gcctctgggc 2940 tgaacgctta tcgtaatctt agtaaaatag cgatatcaca tagagcctct gagcggttaa 3000 agaatgccgg agtagagttg cctgatagcg tgttgtatag tcgccatacc caatccagga 3060 tacaagatgc aatactcaag gcgcaaatga cagaaaagga agaaattgag atgtcattgt 3120 acttctttaa agacaaaggt tatcttagat cacttcgtga attagtgaag tctaaatcag 3180 gcgatttggc tatgatacat aggtgcgaat ggggtgagcg agttactatt ctcgaatctt 3240 caatattcga cgtagtttcg accactccat tatcaatgga agtgtacccg ggttcgataa 3300 tgtccttcat tttatgttat accggactca aaggtgctca tagtggacaa ttggctggtt 3360 tagtaggttt gttacaaggt aaatacggcg gtgggaagat tagcgaactt cagttttcga 3420 tagcaaagaa aatctatcta actaagccat atttgttaaa cgaatttatc atagcttgcg 3480 gtctcggcgg cgaagcggaa ttagccctta aaaacgctct tcatgcattc gaaatgttac 3540 gaggcgttga gttttcaacg gtacacaccc caaggcagtt tttctttggt gttgattcgg 3600 gagttacgct tggtaatcat cttgactacc caaacggatt cccaggaacg agaattgagt 3660 tagcggcaca cctgttatta gcgatgaatt tcttaagttc taacgctcag tcctgtaccg 3720 gtaggtctat tcgtgtacga gtaccaaggg ggatgtggtc gcggtgtacg aacttctaag 3780 agcccggggt tgaacgcccg gtgtggggag atagagaagg tgc 3823 //