ID HM125549; SV 1; linear; genomic RNA; STD; VRL; 3846 BP. XX AC HM125549; XX DT 01-MAY-2011 (Rel. 108, Created) DT 01-MAY-2011 (Rel. 108, Last updated, Version 1) XX DE Rice ragged stunt virus isolate GD segment 1, complete sequence. XX KW . XX OS Rice ragged stunt virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Oryzavirus. XX RN [1] RP 1-3846 RA Chen Q., Wu M.A., Wu Z.J., Xie L.H.; RT "Phylogenetic evidence for origin and evolution of rice rigged stunt RT virus"; RL Unpublished. XX RN [2] RP 1-3846 RA Chen Q., Wu M.A., Wu Z.J., Xie L.H.; RT ; RL Submitted (15-APR-2010) to the INSDC. RL Institute of Plant Virology, Fujian Agricultural and Forestry University, RL Fuzhou, Fujian 350002, P.R. China XX DR MD5; 7399616a299ca7318ffc4979ad7919af. XX CC GenBank Accession Numbers HM125549-HM125558 represent sequences CC from the 10 segments of Rice ragged stunt virus. XX FH Key Location/Qualifiers FH FT source 1..3846 FT /organism="Rice ragged stunt virus" FT /segment="1" FT /host="rice" FT /isolate="GD" FT /mol_type="genomic RNA" FT /country="China:Xinyi, Guangdong province" FT /collection_date="2007" FT /db_xref="taxon:42475" FT CDS 30..3740 FT /codon_start=1 FT /product="structural protein" FT /note="RRSVs1gp1; P1" FT /db_xref="InterPro:IPR008580" FT /db_xref="UniProtKB/TrEMBL:F4YTT6" FT /protein_id="AEC32891.1" FT /translation="MEQRQYILDLVRRELTDTPQTQDLQKLTERINSLEKTITQLGTLL FT LGLNSTTAHEVSSLATAMQKVLYYNRAKAAISDFIMAIPRYPLYSYYSNDDIDDYHLAV FT VNRKPILPQFRYLGLMFGKPATGIQPYNFEVSFNLSKVEQTLISELAPTESQVIEDMRR FT DSTMLLKAEGRYDKSLNVFTVLITIITSNKLIYSQRLNIPGHRVTSFELMIIANAVHTT FT DFEPAKVTKLPVVNGDIVYNEYHFEIRVQDMSTLPSPAFHARTIQSIKKTWRNADFSTG FT QLSAEDATYEPKMSGAEDVVIPHVYGLAESCEILTISDVYESVYNFESLCYCYSKKSGM FT EMAVRMMMLALELMRDDYKQVNSIYDVDHQTSESVGILAGITEGLLANAKAIALLVKHA FT VLSEELQINLNSIEQSYSRLVPLVPIYVTFDHVGTYSKGDASIRDEPFSLTGLQLPMFA FT EGLSNSTIKTKFKSTWSVEPNVFGADHTIDCYESDDFIVLLKPKFAYWDHRYSHQPVSA FT VSYSDRGKSRTSYVLDCASSYNEESSLGYTSLFLAGRKAASPCALVNIPLNRSVKFESV FT SFLITSKRSVLPISGENLFGEIDMYIGRVRGTLNCNKFTSTEYIDRDGYKRYGLIGKCT FT GGSLLNASLSPLWVRLFCGGHKNADQIRFIGFSRTPVVGTLSGESLEVYPMPGSIGSSG FT TLSQSGRMSIYNDVTSLEVTLSVRHEASLETANVYAQSEIPGAALSTEIRDYIRQQNLY FT YSDLGLREEEAMIQGAVVMRTTFRGKLYVTKGTDSIPQSVYVWNTQLNDLAVAVKMTAD FT LANAAEIRSKENQFRLNEMEQAVREIENQLLLSGIIDGLAALTGPATPVVKKAASLVFG FT AMKNMSRSGFRILAAGLTNSYFKTVMTHFLGTRKGVEVWRGLGSACAESSVMIKMSGKT FT KPIVKEGSTDLFLADKNFILADPIEFAKHNISTKYGGNVEQIGNVVSDSERLAVGGDLG FT SHVVTVFHRPLSILPEPLRTLLFKLSTSGLSKRDLSAREAWIRQTLHPTHSYATISYDY FT VLPKTGGNRRVLCFAGVGDPNPYNLPTGDKNVGIGSYMVEFDIIGLDKDTGVKVMRPVP FT WKQCGYTEEQVWSIYKTLGKEYRKVELKPYTVEDAWRVIAKSSHKRVLSDKAIISTPIS FT YERQRAIEYMLSSHGFDYNLVLNNCQDFTRGLFDYARGGPVPDFIENDVRIAMIQSTSR FT HFAEVCSWGGV" XX SQ Sequence 3846 BP; 1118 A; 725 C; 944 G; 1059 T; 0 other; gataaaactc caagacccaa caagacggca tggaacaaag acagtacatc cttgatctgg 60 tacgcagaga actcacggac acaccacaaa cccaagactt acaaaaacta actgaacgta 120 ttaattcgct tgaaaagacc atcacgcagc tcggaacttt gcttttaggg cttaactcca 180 ccacagcgca cgaagtgtca tcgttagcta cggcaatgca aaaagtttta tattataatc 240 gagccaaagc agcgataagt gatttcatca tggctattcc aagatatcca ctttacagct 300 attatagtaa tgatgatatt gatgattatc atttagctgt tgttaatcgt aagccaattt 360 tgccacagtt taggtattta ggtctcatgt tcggtaagcc ggctactgga atacagcctt 420 acaattttga agtgagtttc aatctgagca aagtagagca aactttgatt tccgagttag 480 ctccaacgga atcgcaggtc atcgaggaca tgagacgtga ctctactatg ttactgaaag 540 ctgagggtcg ttacgacaaa agtcttaacg tatttacagt attgatcaca atcattacat 600 caaataagct tatatactcc cagcggctta acattccagg tcatagggta acgtcatttg 660 agcttatgat tatagcgaat gcggttcata ccaccgattt cgagccggcg aaggtgacca 720 aacttccagt tgtgaatggg gacatcgtct ataatgagta ccactttgag attagagtgc 780 aagatatgtc aacgctaccg tcgccagctt ttcacgctcg aaccattcag tccatcaaaa 840 agacttggcg taacgctgac ttttcaacag gccaactatc agctgaggat gcaacctatg 900 agccgaagat gagtggagcc gaagatgtcg tgataccgca tgtatacggt ttggctgaga 960 gctgtgagat tttgactatt tccgacgtct acgaatcagt ttacaatttt gaaagcctgt 1020 gttactgtta tagtaagaag agtggaatgg aaatggcagt caggatgatg atgttagctt 1080 tagagttaat gcgcgatgat tacaaacaag ttaatagcat atatgacgtc gaccatcaaa 1140 cttcagaatc agttggaatc ttagctggga tcacggaagg tttattggcc aacgcgaagg 1200 cgatcgcgtt acttgttaaa catgctgtac tgtctgaaga gctgcagatc aatttaaatt 1260 caatcgaaca atcttatagt agattagtac cgctagtgcc tatctatgtt acgtttgatc 1320 acgtcggaac atactcaaaa ggtgatgcgt cgatccgtga tgaacctttt tcgttaaccg 1380 gattgcaact gccaatgttc gcggaagggc tgtcgaactc aactatcaag actaaattta 1440 aaagcacttg gtcggttgaa ccaaatgtat ttggagcaga tcatacgata gattgctatg 1500 aatctgacga ctttatagtt ttactgaagc caaaattcgc ttattgggac caccgatatt 1560 ctcatcaacc cgtgtctgcg gttagctact ccgatagagg taaatcgaga acgagttatg 1620 tattggattg cgctagctct tataacgagg agtcttcgct tggttatacg agtctatttc 1680 tggcaggacg taaagcggcg agcccatgtg cgctagtcaa tatccctctc aatcgttcag 1740 tcaaatttga gagcgttagc tttttaatta catcgaaaag atctgtgtta cctatttcag 1800 gagaaaactt gtttggagaa attgacatgt acattgggag agtgcgtggc acgctaaact 1860 gtaacaagtt cacttcgact gaatacatcg accgtgatgg ttataaaaga tatggattga 1920 ttggaaaatg cactggagga tctcttctca atgcaagctt atcgcctttg tgggtacgtc 1980 tattttgcgg aggtcataag aatgctgatc agataagatt cataggcttt tctagaacgc 2040 ctgtcgtagg gacgttgtca ggtgaaagtt tagaagtata tccgatgccg ggttctattg 2100 gatcgtcagg cactttatcg caaagtggga gaatgtcgat ttataatgat gtaactagcc 2160 ttgaggttac tctttcagta agacacgaag caagtttaga aacagcgaat gtttacgctc 2220 agtctgagat acctggggct gcgttatcga ccgagattag ggattacatt agacagcaga 2280 acttatacta ttccgattta ggattaagag aggaggaagc catgatacaa ggggctgttg 2340 tgatgcgtac tacatttagg ggaaaattgt acgttactaa aggtactgat tcgatacctc 2400 agagcgtcta cgtgtggaac acacaactaa atgacttagc agtagcggtt aagatgactg 2460 ccgatctcgc aaacgcagct gagattagat caaaggagaa tcaattccgg ttgaatgaga 2520 tggagcaagc tgtgcgtgaa attgaaaatc agctattact ttctggcatt attgatggct 2580 tagcggcgct cacaggacca gcgaccccag tggttaagaa agcggcgtca cttgtgtttg 2640 gtgcgatgaa gaacatgtcg aggtcaggat tcaggattct agcggctggg ttgacgaatt 2700 cctatttcaa gacagtaatg acacacttct tgggtacgag gaagggcgtt gaagtgtggc 2760 gtggattggg atctgcatgt gctgagtcaa gcgtaatgat taaaatgtcg ggtaaaacaa 2820 agccgatagt caaggaaggt tcaacggatt tattccttgc tgacaaaaat ttcattctcg 2880 ctgatcctat cgagttcgcg aagcataaca ttagtactaa atacggtggg aacgttgaac 2940 aaataggaaa cgtggtatca gattcagaga gactcgcggt tggtggtgat ctaggaagcc 3000 atgtagtgac ggtctttcat cgaccattaa gtattttacc agaaccattg aggactttac 3060 ttttcaaact ttccactagt gggttaagta agcgtgattt aagcgctaga gaggcatgga 3120 tacgacagac tctgcatcct acgcactcat acgccactat atcttacgac tacgttctgc 3180 ctaaaacagg tgggaaccga agagtgctgt gtttcgcggg agttggcgat cctaaccctt 3240 acaatcttcc gaccggcgat aaaaatgttg gtattggttc gtacatggta gagttcgata 3300 taatcggttt agataaggat actggagtga aagtgatgcg gccagttcct tggaagcagt 3360 gtggttacac agaagagcaa gtgtggtcta tttacaagac gttaggtaaa gagtatcgta 3420 aagttgaact gaagccttat accgttgaag atgcgtggcg tgtaatagct aaaagttcgc 3480 acaagagagt gctgtcagat aaagcgatca tatcaacccc aatttcttat gagagacaga 3540 gagccattga gtatatgtta tcatcgcatg gatttgatta caatttagtg ctgaataatt 3600 gccaagattt tacaagagga ttgtttgact acgcgcgtgg cgggccggtg cctgatttta 3660 ttgaaaacga tgttaggatc gctatgatac agagtacttc gagacatttt gctgaggttt 3720 gctcgtgggg aggagtgtaa ggacatgagg tgactgtctc tatgccgcct actgttgcct 3780 ggtgggaaag aacggggcct tgagtaagcc gcgcccattg gggtcgggga gtgatagaga 3840 aggtgc 3846 //