ID HM125541; SV 1; linear; genomic RNA; STD; VRL; 3699 BP. XX AC HM125541; XX DT 01-MAY-2011 (Rel. 108, Created) DT 01-MAY-2011 (Rel. 108, Last updated, Version 1) XX DE Rice ragged stunt virus isolate CT segment 3, complete sequence. XX KW . XX OS Rice ragged stunt virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Oryzavirus. XX RN [1] RP 1-3699 RA Chen Q., Wu M.A., Wu Z.J., Xie L.H.; RT "Phylogenetic evidence for origin and evolution of rice rigged stunt RT virus"; RL Unpublished. XX RN [2] RP 1-3699 RA Chen Q., Wu M.A., Wu Z.J., Xie L.H.; RT ; RL Submitted (15-APR-2010) to the INSDC. RL Institute of Plant Virology, Fujian Agricultural and Forestry University, RL Fuzhou, Fujian 350002, P.R. China XX DR MD5; df945ddc148bf7a319398366b42bbb6b. XX CC GenBank Accession Numbers HM125539-HM125548 represent sequences CC from the 10 segments of Rice ragged stunt virus. XX FH Key Location/Qualifiers FH FT source 1..3699 FT /organism="Rice ragged stunt virus" FT /segment="3" FT /host="rice" FT /isolate="CT" FT /mol_type="genomic RNA" FT /country="China:Changting, Fujian province" FT /collection_date="2007" FT /db_xref="taxon:42475" FT CDS 86..3607 FT /codon_start=1 FT /product="major core capsid protein" FT /note="RRSVs3gp1; P3" FT /db_xref="UniProtKB/TrEMBL:F4YTS8" FT /protein_id="AEC32883.1" FT /translation="MSNLPKPASHFEPEKNVDDKGNVIGSAPPVSKDTPTQQASVSLPN FT QEEPTQQTLVATELPTKPDYNDLLLKASDERLLLVKEAKPQTLRFYASPTGLTASGFSI FT VTSPTSSYEQHAIDIFPYNCPVDKIVPAFTLEQIKITNDVLSSAQQSYLSRIPHDTSLV FT KLNEIEVVTGGSRDLFSLGTGYVMVVPNAEFFEGANLKFVYGVPMADIIFSKLTSQSAA FT DYAFLDRSRIASGFIMFALHFALRTNVNLVVTKDNSARFASELSYSRPMSFVQGKKIVL FT PVQPHVCFAEGNSLMRYLDTALEGKYTQGVTYKYGRERIITETKEGGPITEITYLNIDN FT VTAQALGITAHVIGIDRYREDNVKRALLAYSLSGSTVDLMQSDESERMFGRMLSPQQEL FT SYLLVGAALSQDVYKTILRANLDAFMMFGTVMPSLSDSLAKIPADAGNQQIISLIRGRQ FT SVSGFENAMEYLAMQVTPPLIWPCVISREVNVTGLSLLIMLLEYILFFIFYPSLAKKCG FT AGLCNNFYKLVFALSNSEWSQFVTRVGYDGTLGNSIPITDEDYWSNARRPALFTTDLSQ FT FRLLGLIQRLIAPIGEHREHVKAQAAEFPRLKARTEYWNPYPNPGAQHVEQTIFKARLL FT QAFDETLTLVKDLNQTGQLVSKTLMAGVAKVFNTCKIKLRYHGVGFGRDIGMPLAYLRD FT RKINFYHDYDGRLDTPFPNQMMLVSASQSPHDHKIPIELRRKGQIVLETGVVWTLVLGL FT QFPSHQFDEDMTNDPICKFRAPSPGEELGKDDTIIAMCANACVPFSIAAGIISESYADG FT GMKEIKELLSGSLSSTEFRNLISCIQTAMQGSGFNVGRNRDVFRQNETVDLRFIDPKVR FT YVENELTIIAPTPQDPPIIRGDLQLIPEGLMPRFRLGLTAIADSSSEYSRLRKGLYLAR FT CEVDVEAPNNALPLDLRDYVEVEYSHDLFQVRRIQTKQALGIFYQGEFYYRPALVPKML FT IVVNTSEEMEPSYQEFFMQCLEERRIVIKLPKMYFLSRIVCTHSIQRPDERDAVLGLLA FT VRNDQIPLVTFYDTEQVDPTIQFDGLASGSKSKFIWPISSIDQNVVVRALGASGSTAPI FT GFAAPTDSMCDSGSIDDVGNLTTGAGVLKDPRVISLTNGVINYTERANLTGRVLYRYRP FT AYALDSY" XX SQ Sequence 3699 BP; 990 A; 795 C; 867 G; 1047 T; 0 other; gataaatctt cccttgacca cgagtattac gcacacttcg taagttcccc cctgcatcat 60 ttcaagagga cctacactct gaaccatgtc aaatcttccc aaacctgcca gccactttga 120 acctgaaaag aacgttgatg acaaaggcaa tgtaattggt tctgccccgc cagtgagtaa 180 ggataccccg actcaacaag catctgttag tttgcccaac caagaagagc caacacaaca 240 gactttggtc gctacagagc ttccaactaa acctgactat aatgacctgc ttctcaaagc 300 tagtgatgag cgtctgttat tggttaaaga agctaagcct cagactcttc gtttttatgc 360 cagcccaaca ggtttaacag cgtcaggatt ctctattgta acgtcaccga cgtcgagtta 420 tgagcagcac gctattgaca ttttccctta caactgtccg gttgataaga ttgtgccagc 480 gttcacactt gaacagatca agatcacgaa cgacgttctt tcatctgccc aacagtccta 540 tctctccagg atcccgcatg acacgtcatt ggtaaagttg aatgaaatcg aagtcgttac 600 tggaggtagt cgcgatttgt tttcgctcgg aacaggatat gttatggtgg tacctaatgc 660 tgaatttttc gaaggcgcca acttgaaatt cgtttacgga gtacccatgg ccgacatcat 720 cttttccaag ctgacgtctc aatcagcggc agactatgct tttcttgatc gaagtcgtat 780 cgcttctggc tttattatgt tcgcgcttca ttttgcctta cgtacaaacg ttaacctggt 840 agtcacgaaa gataactcgg ctcgatttgc gtctgaactt agttatagcc gcccaatgtc 900 gttcgtgcaa ggtaagaaga tcgtccttcc tgtccaacca catgtttgtt ttgctgaggg 960 caattcttta atgcgatatc tggataccgc tctagaagga aaatacactc aaggtgtgac 1020 ctacaaatat ggacgtgagc gcattattac tgagactaaa gaaggtggac ctatcacaga 1080 aataacttac ctgaatatcg acaatgtcac agcccaagct cttggaataa cagcgcacgt 1140 tataggaatt gataggtata gagaggataa tgtcaaacga gcgttgctag cgtattcatt 1200 atcaggaagt actgtcgatt tgatgcaatc agacgaatcg gagaggatgt ttggacgcat 1260 gctatcacca cagcaggaat tgtcttatct tttagttggt gctgcattaa gccaggacgt 1320 ttacaaaact atcttgcgtg ctaatcttga cgcctttatg atgtttggaa cggtgatgcc 1380 gtcgctatct gacagtttgg cgaaaatacc tgcagacgct ggaaatcagc agattataag 1440 cttgattcgt ggacgacagt ccgtctcagg atttgagaac gcgatggaat atttagctat 1500 gcaagtgact cctcctctaa tttggccctg tgttatatcg agagaggtta acgtcactgg 1560 cctatcgttg ctgatcatgt tgttggaata tattcttttc tttattttct atccgtcgtt 1620 ggctaagaaa tgcggtgctg ggttgtgcaa taatttttac aagcttgttt ttgctctatc 1680 gaatagtgag tggtcgcagt ttgttacgag ggttggatat gatggtactc ttggtaattc 1740 aattcccatc actgacgaag attattggag taatgccaga agaccagctc tcttcaccac 1800 cgacctctcc caattcagac tcttaggact gatacaacga ttaatcgctc caatcggcga 1860 acatcgggaa catgttaaag ctcaagcagc ggaatttcct cgtcttaaag ctcgcactga 1920 atattggaat ccctatccca atcctggcgc gcaacacgtt gaacagacga tattcaaagc 1980 tcgattattg caggcttttg atgagacgtt gacgctggtg aaagatctca atcagactgg 2040 tcagctggta agtaagactt taatggccgg agttgctaaa gttttcaata cctgtaaaat 2100 caagctgcga taccatggtg tcggatttgg acgtgacatt ggaatgcctc tcgcttatct 2160 gcgcgatcgc aagattaact tctatcatga ttatgacgga cgtttagata ctccttttcc 2220 caatcaaatg atgttggtgt ctgcaagcca gagtccccac gaccacaaga taccgatcga 2280 actaagaagg aagggacaga tagtattgga aacaggagta gtttggacgc tagtattggg 2340 tctacaattt ccttcacatc aattcgatga ggacatgact aacgatccga tttgtaaatt 2400 tcgagcgcca agtccaggtg aagagttagg caaggatgat acgataattg ccatgtgtgc 2460 taacgcctgt gttcctttta gtattgctgc gggaattatc tctgagtctt atgctgacgg 2520 tggaatgaag gaaattaagg agttgctgtc gggatcacta tcttcaacag agttccggaa 2580 tttgatatcg tgcattcaga ctgcgatgca agggagtggc tttaatgttg gtagaaatag 2640 agatgtgttc agacagaatg agacggtaga cttaaggttt atcgatccga aggtgcgtta 2700 tgttgaaaac gaattgacga ttatcgctcc cactccacaa gatcctccta taattagagg 2760 tgatttacaa ttgattccag agggactgat gccgcgattt agactcggtt tgactgccat 2820 cgccgacagc tctagcgaat atagccgcct gcgcaaaggt ttatatctag cacggtgcga 2880 agttgatgtc gaagcaccaa acaacgcact accattggat ctccgagact atgtcgaagt 2940 tgagtactcg cacgacttgt ttcaggtccg tagaattcaa acgaaacaag ccctcggaat 3000 tttctatcaa ggggaatttt actatcgtcc ggctttagtc ccgaagatgc tgattgtcgt 3060 caacacgtca gaagagatgg aaccgtcata tcaggaattc tttatgcagt gtctggaaga 3120 gcggcgcatt gtaatcaaac tgcccaagat gtactttctt agtcggatag tatgtactca 3180 ctcaatacaa aggcctgatg agagagatgc cgtgctcgga ttgttagcgg tgagaaacga 3240 tcagatacct ctagttactt tctatgatac tgagcaagtt gatccaacaa ttcaatttga 3300 cggactagcg tcaggatcca aaagtaagtt tatttggcct atttcgtcca ttgaccaaaa 3360 cgtcgtcgtt cgagcgttag gtgccagtgg aagtactgct cccattggat ttgctgctcc 3420 gactgattcg atgtgcgata gtggtagtat tgatgacgtt ggtaacttga cgacaggcgc 3480 cggtgttttg aaggatccca gggttatcag tctcactaac ggcgttatca attacaccga 3540 gcgagccaat ttaactgggc gtgtattgta tagatatcgg cctgcttacg ctctcgattc 3600 ttactagtag cggacgtttt cttggggtgg tacgtggtct tgacacgagg ggcgtattga 3660 aactggtctt ggcctatagg gaggagacgg agatggtgc 3699 //