ID HM032712; SV 1; linear; genomic RNA; STD; VRL; 6041 BP. XX AC HM032712; XX DT 01-APR-2011 (Rel. 108, Created) DT 01-APR-2011 (Rel. 108, Last updated, Version 1) XX DE Radish mosaic virus isolate DH-1 segment RNA1, complete sequence. XX KW . XX OS Radish mosaic virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus. XX RN [1] RP 1-6041 RA Wang C.-C., Bau H.-J., Chen Y.-K.; RT "Molecular characterization of Radish mosaic virus in Taiwan"; RL Unpublished. XX RN [2] RP 1-6041 RA Chen Y.-K., Wang C.-C.; RT ; RL Submitted (24-MAR-2010) to the INSDC. RL Plant Pathology, National Chung Hsing University, 250 KuoKuang Road, RL Taichung 40227, Taiwan XX DR MD5; bbcc68738319f0fac796db2b4c02c394. XX FH Key Location/Qualifiers FH FT source 1..6041 FT /organism="Radish mosaic virus" FT /segment="RNA1" FT /host="Raphanus sativus" FT /lab_host="Brassica chinensis" FT /isolate="DH-1" FT /mol_type="genomic RNA" FT /country="Taiwan" FT /collected_by="Yuh-Kun Chen" FT /collection_date="Dec-2007" FT /identified_by="Yuh-Kun Chen" FT /db_xref="taxon:328061" FT CDS 316..5877 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:F2VU28" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:F2VU28" FT /protein_id="ADZ55760.1" FT /translation="MACVTLDRDQQSYALIPYVTDKHVTWLLKCYVRVNTFDPDFPVTK FT RLERLRQHHFDLLCLGYGAFVMHRNAMAHVPRTVETADFIFEDYHQFLCDLVTGNAGIT FT RLRKYINVCYGTYLDMVLEFSACTLDDEGDEDFELQGLKSCLHSLANYIPSTLDRAISW FT STNKVIDGIRARFEEVVAEWCPMAMQACSWISNIWDKVTLWVQESIEAMRWFLKGAREL FT FYYGVSILTASCVIGIVEKILVATNLLAPNRGLVEAFLSSAALTGAFMSFKKKEDPTPM FT ITMISVLAGVVSAAVTAMFGAPCVAVLQGPVELLESAATALGIFCETTLLSMGKTCQAV FT NQISTCAGNLKAMAGKLFGILQDFIWKVFGMESRFLRDASLMFEEDVDQWLKDIAECQD FT SYLAKAYSSQDDIMKMQALIKKGHDMRSKVLKVTSRISPVLANTVTRGVESVEKLLRES FT LCQGVKATRKIPFVVYAYGESRTGKTLVVDKLITDFQNHFGLGKDTVYSRNPIDQYWSG FT YRRQPIVSIDDFGAVACDPSMEAQMIPLVSSAPLPLTMAAIEEKGMMFDSKFIFCSSNL FT LEASPESKLQDNQAFRNRRHVLINVKLDATKPYNMHDFTENQIYQILKYDNGTYVVQAE FT FHTYGDLFSYCLERWEKHENEQTANLANSLEEPKADGDFISFEFLMHTLIRRNLPDKMV FT DVIFEERTKTQFVHLVTYRRKGKLWSYYVSPEGRIQTIAESVEDPKALAKEVESMDFLR FT RMYEMLRYNEETDLIVKMHLKDLAREDFYDDKMNYIGTFGNEREHALMRSTFDSMAGWH FT KVVLCGMGVLQDRCSSVKWYDGIIDKIQDTMYTLYSKEISEWPMGLKIVVGVLLTSLFG FT AGLWKLMGVLQGTGSVAALGVTAATHFGHEHGGAKATAQSRKPNRYDVAQYKYRNVPIT FT KRAWAQGDMPISHVTAMIFDRIKASWQYGHTEAQIAMVPGRRFIGYAHFFRTIERPIQV FT RIHTASGSQPLFYKPENMHYFEESELCVYEDSALQDIAHTCWDLFEWDFEQIQQDSFKA FT LFLSCKRKSSTGQPNPEWADIDVGTRSESLMVQEGEYSRVLPRYLEYTAPTVNHDCGSL FT IVAEVNKTFKIVGVHVAGSGGTKGYACLLPPLVKKVQAQHAQKFFDYLPFAEKEGEGIE FT KVAMLQKGIHIPLPTKTALVETPVEWHLDTPCDKYPSILSNEDPRLEVSGQTDYDPFKA FT GILKYKDPMGVLDNKLLVEVCEEIEQSWLDCKEEGETFEEVSLEQAINGVKDVDYMDRI FT PLATSEGFPHILSRAHGEKGKVRFVEGDSEEMMLIPGTSVSEALDIMEAQLEKEVPTLI FT GIECPKDEKLPHRKIFEKPKTRCFSILPMEYNLAVRRRFLTFVRFIMRNRNVLPCQVGI FT NPYGMEWTDLAMRLKRKGNNILCCDYSSFDGLLSKQVMKAMSDMINNFCGGSESSKRKR FT EHLLMACCSRYAICKNTVWKVECGIPSGFPLTVICNSIFNEILIRYSFKAILRSQKIPD FT MISVSFDEYVSMVVYGDDNLLSVSEVIKPYFDGKRLKEFLATLHITITDGKDKTSPFLQ FT FRCLEDCDFLKRGFKNRGLYLDAPERKKSLWAQLHYVNANHLEKHEATRTNLVTVLREL FT FMWDKNECAELRRKALQRISWLEPSDLQTVAQIEAWYAGNRGKYFPDSSDSISMLLQKE FT NLGPLLAPQGEQRGIEITPRVRTANLAHESFKTAKDDEVWILCQTMYPHGGLPEGVIAV FT NWPVGTGRGGLPTSTWRDENFKRPPFELGGKLRCALDNGKRVVFSPREGILPGNIMGVL FT LLVLEKKKKPEESNVFFSPAILQSKWLGYLPREGDFAF" XX SQ Sequence 6041 BP; 1658 A; 1085 C; 1553 G; 1745 T; 0 other; taaaccgcaa tcaggaccag tgtccgacca gttacaatta cattctcaat tatttgtgaa 60 ggtaggtaag gggctcagaa acctctcaga ctactattga gattggaaat tttgttacgc 120 gttttctcaa gctttcttga gcaagccatt ttgtgcttgc cagttggatt gttattgaga 180 acttaagtgt tgttagttat tctgcgttta catcattgct gtgcccttcg ttaaaggaat 240 atcagatatt gtttgtgaac accgttacgc atttgcttgg ttcaaatata ccgcaggctt 300 taagccatta aaataatggc ctgtgttact ttggatcgag atcaacagag ctatgctctg 360 atcccgtacg ttacagataa acatgttaca tggcttctga agtgttatgt tcgagtaaac 420 acttttgatc ctgatttccc ggttaccaag cgtcttgagc gcctaagaca gcatcatttt 480 gatctgttgt gcttaggcta tggggcgttt gttatgcata ggaatgccat ggcacatgtg 540 ccacgcacag tggagactgc tgattttatt ttcgaagatt atcatcagtt tctctgtgat 600 ttggtgacag gaaatgctgg gatcacccgc cttagaaaat acataaatgt ttgctatggc 660 acttacttag atatggttct tgagtttagt gcatgcacac ttgatgatga aggggatgaa 720 gacttcgagc tgcaaggcct taaaagttgt ttacacagct tggctaatta cataccatct 780 accttggata gggccatttc atggtcaact aacaaggtta ttgacggtat tcgagcgcgc 840 ttcgaagagg tggttgctga atggtgtccc atggcaatgc aggcatgttc ctggatttct 900 aatatctggg ataaagttac tttgtgggta caggagtcta tagaggcaat gcgctggttt 960 ttgaaaggag cccgcgagtt gttttactat ggagtatcta ttttgacggc cagttgtgtt 1020 attggtattg tggagaaaat tttggttgct accaacttgt tggctcctaa tcgtggactt 1080 gttgaagctt ttttatcaag tgctgctctg actggggcat ttatgtcatt caagaagaaa 1140 gaggatccaa cacccatgat aacaatgatt tcagttcttg ctggagtggt ttcagctgct 1200 gttactgcca tgtttggcgc gccctgcgtt gctgtgcttc aaggcccagt tgagttgttg 1260 gagagtgctg ctaccgcact tgggattttc tgtgaaacaa cattgttgtc catgggaaaa 1320 acctgccaag cggtaaatca aattagtaca tgtgctggaa atttgaaagc gatggcggga 1380 aaactctttg gaattttgca ggattttatt tggaaggtgt ttggaatgga atctagattc 1440 ttgcgcgatg cgtcccttat gtttgaggaa gacgttgacc aatggttgaa agatattgca 1500 gagtgtcagg attcatatct ggcaaaagct tattcctccc aggatgacat tatgaaaatg 1560 caggccctga ttaagaaagg gcatgacatg cgttctaaag tgttgaaagt caccagccgc 1620 atttccccag ttttggcaaa tacagttaca cggggtgtag agtcggtgga gaagctttta 1680 cgagagtctc tgtgccaggg agtgaaggca acgaggaaaa ttccctttgt tgtgtatgcc 1740 tacggggaat ccagaactgg taagacgttg gtcgtagaca agctcattac agactttcag 1800 aaccattttg gtcttggaaa agacactgtt tacagtagga atcccattga tcaatattgg 1860 agtggatatc gaagacagcc cattgtgagc attgatgatt tcggagctgt ggcttgtgac 1920 ccttctatgg aagctcagat gataccactg gtatcgagtg cgcctctgcc tttaactatg 1980 gctgccattg aggagaaagg aatgatgttt gactcaaagt tcatcttttg ttcttccaat 2040 ttattggagg caagccctga gagcaaactg caagataacc aggctttccg taataggagg 2100 catgttttga taaatgtcaa gctggatgct accaagccat acaacatgca tgattttacg 2160 gagaatcaga tctaccagat tctgaagtat gacaatggta cgtatgttgt tcaggctgaa 2220 ttccatactt atggagattt gttctcctac tgtctggaga gatgggagaa acatgaaaat 2280 gagcaaacag cgaatcttgc taatagtttg gaagagccaa aggcagatgg agacttcatt 2340 agctttgagt tcttgatgca cacgcttatt agacggaatc ttcctgacaa aatggttgat 2400 gttatttttg aggagagaac taagacgcag tttgtgcatc ttgttaccta caggcgaaaa 2460 ggaaagctct ggagttatta cgtcagtcct gaaggaagaa tccaaacgat agctgaatca 2520 gtggaggatc ctaaggccct tgcaaaggag gttgaatcaa tggattttct acggcggatg 2580 tatgagatgc tgagatacaa tgaggaaaca gacttaatag tgaagatgca tctcaaagat 2640 ttagccagag aggatttcta tgatgataaa atgaactaca ttggcacctt tggaaacgag 2700 agagaacacg cgctaatgcg gtctactttt gattctatgg caggctggca taaggttgtg 2760 ctgtgtggaa tgggagttct ccaagaccga tgctcctctg taaagtggta tgatggcata 2820 attgataaaa tccaagacac catgtacacg ttgtacagca aggaaataag tgagtggcca 2880 atgggattga agattgttgt tggagtattg ctcacatcac tctttggagc tggactttgg 2940 aagttaatgg gagttcttca gggaacaggt agcgttgctg ctttgggagt tactgctgcc 3000 actcattttg gccacgagca tggaggagct aaagccactg cacagagtcg aaaacctaat 3060 cgatatgatg tggcgcagta caagtacaga aatgttccca tcaccaagcg agcttgggca 3120 cagggagaca tgccaatcag tcatgtaacg gcaatgattt ttgaccgcat caaagcaagc 3180 tggcaatacg gacacacgga agcccagatt gctatggtac ctggaagacg tttcattggt 3240 tatgcccact tctttcgcac gatagaacgc ccaattcagg tgcggataca cacagccagt 3300 ggctctcagc ccttgtttta caagcctgag aacatgcatt actttgagga gagtgagctt 3360 tgcgtgtatg aagatagtgc gctacaggac atagcacaca cgtgctggga tctatttgag 3420 tgggattttg agcagataca acaagattct ttcaaagcgt tgtttctttc atgcaaaagg 3480 aagagcagca ctggacaacc aaacccagag tgggctgata tagacgtagg gacacgttca 3540 gaatcactta tggtgcaaga aggagagtac tcacgtgttc tcccacgcta tctggaatac 3600 acggcgccaa cagttaacca tgattgtggt tctttgattg tggctgaagt gaacaaaacg 3660 ttcaagatcg ttggtgttca tgtggctggt tctggtggta ccaaagggta cgcttgtctg 3720 ttgcccccac ttgtcaagaa ggttcaagca cagcatgcgc agaaattttt tgattatttg 3780 ccgtttgcgg aaaaggaagg tgagggcata gaaaaggttg ccatgctaca aaaaggcatc 3840 cacatcccct tgcccacaaa gacagctctg gttgagacac ccgttgagtg gcatttggac 3900 acgccttgtg ataagtaccc cagtatttta tctaatgaag atcctcgctt ggaggtgtct 3960 ggccaaactg actatgatcc attcaaagct ggcattttaa aatacaaaga ccctatgggt 4020 gttttggaca acaagttgct ggtggaggtc tgtgaggaga ttgaacagag ctggctagat 4080 tgtaaagagg aaggagaaac ttttgaggaa gtgagtttgg aacaagccat taatggagtc 4140 aaagatgttg attacatgga cagaatccca cttgcgacat cagaaggatt tcctcacatt 4200 ttgtctcgag cacacggtga gaaaggcaag gtacgttttg tggaaggtga ctctgaggaa 4260 atgatgttga ttccaggaac cagtgtgtca gaggctctcg acattatgga agctcagctg 4320 gaaaaagagg ttccaacttt aattggaata gagtgcccca aggatgagaa gctgccacat 4380 cggaaaatat ttgagaagcc caaaacccgt tgtttttcca ttttaccaat ggaatacaac 4440 ttggcggtgc gtaggaggtt tttgactttt gtccgtttta tcatgcgaaa tagaaatgtg 4500 ttaccgtgtc aagttgggat taatccttat ggcatggagt ggacggattt ggcaatgcgt 4560 ttgaagagaa agggcaacaa catcttatgc tgtgattaca gtagtttcga tgggttgctt 4620 tccaagcaag tgatgaaagc catgtctgac atgataaaca acttctgtgg tggtagtgag 4680 agttctaaac ggaaacgtga gcacttgctg atggcgtgtt gttctcgata tgccatttgc 4740 aagaatacag tgtggaaagt tgagtgtggt attccatctg ggtttcctct tactgtgata 4800 tgtaactcca ttttcaatga gatcctgatc cgatacagct tcaaggcaat tttgcgttct 4860 cagaagatac ctgacatgat ttcggtgagc tttgatgaat atgtgagcat ggttgtctat 4920 ggcgatgaca atttgctgtc ggtgagtgag gttatcaagc cctacttcga tggtaaacga 4980 ctgaaggagt ttttagccac tctccatatt accatcactg atgggaaaga caagacaagc 5040 ccttttcttc aatttcgatg cttggaggac tgtgattttc tcaaaagagg tttcaaaaac 5100 cgaggtttgt acttggatgc cccagagaga aagaagagtt tgtgggcaca gcttcactac 5160 gtgaatgcta accatcttga aaaacatgaa gctacaagga caaatcttgt gactgtttta 5220 cgtgagttgt tcatgtggga caagaatgag tgtgctgagc ttagaagaaa ggcattgcag 5280 agaatttcat ggttggagcc aagtgattta cagacagttg cccagataga agcttggtat 5340 gctggaaata ggggaaaata tttcccagac tcaagtgata gcataagcat gcttttacag 5400 aaggagaact taggaccttt gttggcaccc cagggagagc agaggggaat agaaatcaca 5460 ccccgggtaa ggactgccaa tctggcacac gaaagtttca aaacggctaa agatgatgag 5520 gtctggattt tgtgtcaaac aatgtatcca catgggggtt taccagaggg agttattgct 5580 gttaactggc cggttggaac aggaagaggt ggcctgccaa catcaacttg gagggatgag 5640 aacttcaagc gtcccccgtt tgagcttggg ggaaaattaa gatgtgcttt ggacaatggt 5700 aagagggtgg ttttttcccc acgggaaggc attttgccgg gtaacattat gggtgtgttg 5760 cttttggtgc ttgagaaaaa gaagaagcca gaagagagta atgttttttt ttcccccgct 5820 attttacaaa gtaagtggtt aggttatttg cctagagagg gggattttgc tttttagact 5880 ttgtagattt tttttgtgca tttgaaagtt tggggaaatg cactggttca tggaacaggc 5940 ccccctaggg ggtaggattt tgggttttat tgtttttgtg tgctatatat aaattcccaa 6000 aaaaatcatt ttagttttta tatagatatt tggttttttt t 6041 //