ID HM007119; SV 1; circular; genomic DNA; STD; VRL; 2783 BP. XX AC HM007119; XX DT 11-APR-2012 (Rel. 112, Created) DT 11-APR-2012 (Rel. 112, Last updated, Version 1) XX DE Chilli Leaf curl Salem virus-India [India/Salem/2008] clone pChSalH36 DE segment DNA-A, complete sequence. XX KW . XX OS Chilli leaf curl Salem virus-India [India/Salem/2008] OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2783 RA Singh A.K., Chattopadhyay B., Chakraborty S.; RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies RT in India"; RL Unpublished. XX RN [2] RP 1-2783 RA Singh A.K., Vinothkumar R., Chattopadhyay B., Chakraborty S.; RT ; RL Submitted (17-MAR-2010) to the INSDC. RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru RL University, New Delhi, Delhi 110067, India XX DR MD5; 08396a66ade67614562252daf3f14dc9. XX FH Key Location/Qualifiers FH FT source 1..2783 FT /organism="Chilli leaf curl Salem virus-India FT [India/Salem/2008]" FT /segment="DNA-A" FT /host="chilli" FT /isolate="India/Salem/Chilli/2008" FT /mol_type="genomic DNA" FT /country="India:Salem" FT /collection_date="Nov-2008" FT /clone="pChSalH36" FT /db_xref="taxon:1000663" FT gene 180..518 FT /gene="AV2" FT CDS 180..518 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /note="suppressor of RNAi" FT /db_xref="GOA:H9LCJ4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H9LCJ4" FT /protein_id="AEA76844.1" FT /translation="MWDPLVNDFPETVHGFRCMLAIKYLHLVENTYSPDSLGYDLIREL FT ISVVRAKNYVQASSRYDHFRARLEVSSLADLNQPIQQACCCPHCPRHKGKGMGQQAHES FT EAHVLQNV" FT gene 340..1110 FT /gene="AV1" FT CDS 340..1110 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="nucleoprotein; responsible for encapsidation of FT viral DNA and insect transmission" FT /db_xref="GOA:H9LD35" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H9LD35" FT /protein_id="AEA76845.1" FT /translation="MSKRPADMIISGPVSKYRRLLTSTSPYSKRAAVRIVRATKGKEWA FT NRPMNRKPMFYRMYRSPDVPRGCEGPCKVQSFESRHDVVHMGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGDVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1107..1511) FT /gene="AC3" FT CDS complement(1107..1511) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /note="replicational enhancer protein; enhances viral FT replication" FT /db_xref="GOA:H9LE94" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H9LE94" FT /protein_id="AEA76848.1" FT /translation="MDSRTGELITAAQATNGVSISQVPNPLYFNILNHASRPFNSTTDR FT ITIRVQFNHNLRKALGIHKCFLTFRIWTTLRPQTGRFLRVFRTQVLHQINNFAVISLNN FT VIKAVDHVLWNVLTKTVYVESSHIIKFNVY" FT gene complement(1252..1656) FT /gene="AC2" FT CDS complement(1252..1656) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /note="transcriptional activator protein; transactivates FT virion sense ORFs and suppressor of RNAi" FT /db_xref="GOA:H9LCS4" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H9LCS4" FT /protein_id="AEA76847.1" FT /translation="MQSSSPSQAHYTQVPIKVLHRQSKRSIRRKRVDLECGCSYYLHIN FT CRNHGFTHRGTHHCSSGNEWRQYLAGPKSPLFQHPQPRQPTIQLDNRPHNYQSPVQPQP FT SESVGDTQMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1553..2644) FT /gene="AC1" FT CDS complement(1553..2644) FT /codon_start=1 FT /gene="AC1" FT /product="Rep" FT /note="replicase; responsible for viral replication" FT /db_xref="GOA:H9LDH2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H9LDH2" FT /protein_id="AEA76846.1" FT /translation="MARTTSFCVNAKNIFLTYPKCPIPKEQMLQLILAISCPSNKLFIR FT ISQEKHQDGSLHIHALIQFKGKAKFRNPRHFDVTHPNTSSQFHPNFQGAKSSSDVKSYI FT EKDGDYIDWGDFQVDGRSARGGQQTANDAAAEALNSGSADAALAIIREKLPHDFIFKYH FT NLKSNLDRIFAPPREVYVSPFSISSFDQVPDELEDWAAVNVVSAAARPIKPVSVVVEAD FT SRTGKTIWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKHSALKNWALKNAIFVTLTGPL FT YSGTNQGSTPPIEEEHQEEASRP" FT gene complement(2230..2487) FT /gene="AC4" FT CDS complement(2230..2487) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /note="involved in symptom expression and suppressor of FT RNAi" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H9LCJ5" FT /protein_id="AEA76849.1" FT /translation="MGLCISTPSSSSRVKPSSETPDISMSLTLTPHPNSIQTSRELSPH FT QMSSPTSRRTVITSTGVTFRSMEDLLEEVNRQLMMLQQRP" XX SQ Sequence 2783 BP; 735 A; 572 C; 657 G; 819 T; 0 other; accggatggc cgcgtgccct cctgtcgctt tcatgggccc cacgtgtgtc ttattttctt 60 ttgtcttttc tgcgggcccc accacatgaa catataagcc aatcatattt cagcctcaaa 120 gcttattatt tcagtgggcc ctatatatac ttggtcccca agttttacaa tcatttacca 180 tgtgggaccc actagtaaat gattttccag aaaccgtaca cgggtttagg tgtatgcttg 240 ctataaaata tctgcactta gtagaaaata cgtattcccc tgattcattg gggtacgacc 300 tgatacgtga attaatttcc gtagttaggg ctaaaaatta tgtccaagcg tccagcagat 360 atgatcattt cagggcccgt ctcgaagtat cgtcgcttgc tgacctcaac cagcccatac 420 agcaagcgtg ctgctgtccg cattgtccgc gccacaaagg gaaaggaatg ggccaacagg 480 cccatgaatc ggaagcccat gttctacaga atgtatagaa gccctgatgt tccgaggggc 540 tgtgaaggcc catgtaaggt ccagtctttt gagtctagac atgatgtagt ccatatggga 600 aaggtcatgt gtatcagtga tgttactagg ggtacaggtc tcacccatag agtaggtaaa 660 cgtttctgtg ttaagtccgt gtatgttctg ggcaagatat ggatggacga aaacatcaaa 720 accaagaacc acactaacag tgtgatgttc ttccttgttc gtgatcgtcg tccagtagat 780 aagccgcaag attttggcga tgtgtttaac atgttcgaca acgagccgag tacggcgact 840 gtcaagaata tgcataggga tcgttatcag gttctccgga agtggcatgc aacggtcacg 900 ggtggacagt atgcgtcaaa ggaacaggcg ttagtcaaga agtttgttag ggttaataat 960 tatgttgtgt ataatcagca agaggctggc aagtatgaga atcatagtga gaatgctttg 1020 atgttgtata tggcatgtac gcatgcctct aaccctgtgt atgctactct gaagatccgt 1080 atctatttct atgattcggt gacaaattaa taaacattga attttattat gtgtgaactt 1140 tctacataca ctgtctttgt taatacattc cataatacat gatcgacagc tttaattaca 1200 ttgtttaggc taattacagc aaaattatta atttggtgca agacttgggt cctaaatacc 1260 cttaagaaac gaccagtctg aggccgtaag gtcgtccaga ttcggaaggt tagaaaacat 1320 ttgtgtatcc ccaacgcttt ccgaaggttg tggttgaact ggactctgat agttatgcgg 1380 tctgttgtcg agttgaatgg tcggctggcg tggttgagga tgttgaaata gaggggattt 1440 gggacctgcg agatactgac gccattcgtt gcctgagctg cagtgatgag ttcccctgtg 1500 cgtgaatcca tgatttctgc agttgatatg caggtaatat gaacaaccac actcaaggtc 1560 tactcgcttc ctcctgatgc tcctcttcga ttggcggtgt agaaccttga ttggtacctg 1620 agtatagtgg gcctgtgagg gtgacgaaga ttgcattctt tagtgcccaa ttctttaatg 1680 cagaatgctt ttcttcgtcc aggtactctt tatagctgga gtttggccct ggattgcaga 1740 ggaagatagt gggaatgcca cctttaattt gaactggctt tccgtatttg gtgttgcttt 1800 gccagtctct ttgggccccc atgaactctt taaagtgctt taaataatgc gggtcaacgt 1860 catcaatgac gttataccac gcgtcatttg aatatatttt tgggctcaag tccaagtgtc 1920 cacataaata attgtgtgga cccaaagacc tggcccatat tgtcttcccc gtacgactat 1980 cagcctcaac aactacactt acgggcttta tcggccgcgc agcggcactc acaacattaa 2040 ctgcagccca gtcttcaagt tcatcaggaa cttgatcaaa agaagaaata gaaaaaggag 2100 aaacataaac ctctcgtgga ggtgcaaaaa tcctatctaa gttggacttt aaattatgat 2160 atttaaaaat aaaatcatga gggagtttct cccttattat tgccagagcg gcatcagcgg 2220 agcctgaatt tagggcctct gctgcagcat cattagctgt ctgttgacct cctctagcag 2280 atcttccatc gacctgaaag tcaccccagt cgatgtaatc accgtccttc tcgatgtagg 2340 acttgacatc tgatgaggac ttagctccct ggaagtttgg atggaattgg gatgaggtgt 2400 tagggtgagt gacatcgaaa tgtctggggt ttctgaactt ggctttaccc ttgaactgga 2460 tgagggcgtg gatatgcaga gacccatctt gatgcttttc ttgggatatc cttataaata 2520 atttgtttga agggcaactt atagccagaa ttaattgaag catttgctct ttgggaattg 2580 gacatttggg ataagtaaga aatatatttt tagcattgac acaaaacgac gtcgttcttg 2640 ccattttgaa tcggggacac gcaaaactct gtgggaatgg gggacactgg ggacgaatat 2700 atagtagtcc ccaaatggca taagggtaat tattgtgaac tttccactaa tttcccgcca 2760 aaagcggcca tccgtttaat att 2783 //