ID HE819240; SV 1; circular; genomic DNA; STD; VRL; 2778 BP. XX AC HE819240; XX DT 07-JAN-2013 (Rel. 115, Created) DT 03-APR-2014 (Rel. 120, Last updated, Version 2) XX DE Tomato yellow leaf curl virus complete genome, isolate KB18-7 XX KW complete genome. XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2778 RA Akhtar S.; RT ; RL Submitted (19-MAY-2012) to the INSDC. RL Akhtar S., Sultan Qaboos University, College of Agricultural and Marine RL Sciences, Plant Biotechnology Research Lab, P.O. Box-34, Al-Khod 123, OMAN. XX RN [2] RX DOI; 10.1007/s00705-013-1853-x. RX PUBMED; 24052149. RA Khan A.J., Akhtar S., Singh A.K., Al-Shehi A.A., Al-Matrushi A.M., RA Ammara U., Briddon R.W.; RT "Recent evolution of a novel begomovirus causing tomato leaf curl disease RT in the Al-Batinah region of Oman"; RL Arch. Virol. 159(3):445-455(2014). XX DR MD5; be4a7b61f526a9878c7eb46611522b90. DR EuropePMC; PMC5796946; 29430354. DR EuropePMC; PMC6003059; 29911154. XX FH Key Location/Qualifiers FH FT source 1..2778 FT /organism="Tomato yellow leaf curl virus" FT /host="Capsicum sp." FT /isolate="KB18-7" FT /mol_type="genomic DNA" FT /country="Oman:Al-Khaburah" FT /isolation_source="leaf" FT /collection_date="2011" FT /clone="P-19" FT /db_xref="taxon:10832" FT CDS 148..498 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:B4YT03" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B4YT03" FT /protein_id="CCH75818.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPLQQPCCCPHCPRHKQAPIMDVQAHV FT PKAQNIQNVSKP" FT CDS 308..1084 FT /gene="V1" FT /gene_synonym="CP" FT /product="coat protein" FT /db_xref="GOA:B4YPN4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:B4YPN4" FT /protein_id="CCH75819.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAAPIVQGINKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT CDS complement(1081..1485) FT /gene="C3" FT /gene_synonym="REn" FT /product="replication enhancement protein" FT /db_xref="GOA:L0P309" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:L0P309" FT /protein_id="CCH75820.1" FT /translation="MDSRTGELITAHQAQNGVFIWEIENPLYFKITNHDERPFLMSHDI FT ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLQPQTGRFLRVFRYQVLKYLDILGVISINN FT VIRAVDHVLYDVLENTINVTESHDIKYKFY" FT CDS complement(1226..1633) FT /gene="C2" FT /gene_synonym="TrAP" FT /product="transcriptional activator protein" FT /db_xref="GOA:E1U829" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E1U829" FT /protein_id="CCH75821.1" FT /translation="MQPSSPSTSHCSQVPIKIQHRIAKTKPVRRKRIDLDCGCSYYLHI FT NCINHGFTHRGTHHCSSSPEWRFYMGDRKSPVFQDHQPRREAISNEPRHHFNTDKIQSQ FT HQEGTGDSQMFSQLPNLDDITASDWSFLKSI" FT CDS complement(1557..2621) FT /gene="C1" FT /gene_synonym="Rep" FT /product="replication initiation protein" FT /db_xref="GOA:L0P1E6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:L0P1E6" FT /protein_id="CCH75822.1" FT /translation="MAAPNRFKINAKNYFLTYPKCSLTKEEALSQLLNLQTPTSKKFIR FT ICRELHEDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKTYM FT EKDGDILDHGVFQVDGRSARGGCQSANDAYAEAINAGSKAQALNILKEKAPRDFLLQFH FT NLNSNLDRIFQEPPAPYISPFLSSSFNQVPEELEVWVSENVMSSAARPWRPNSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWFNVIDDVNPHYLKHFKELMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNGALKNATLVTLYEPL FT FSSANQNPTPHSED" FT CDS complement(2171..2446) FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:L0P137" FT /protein_id="CCH75823.1" FT /translation="MFSSNSKESSSARTIDSSTSPPQPGQHISIRTFRELKAQAMSKPT FT WRKTETSLIMEFSRSMEDQLEEVANLQTTHMPRQSTQGPKLRPSIY" XX SQ Sequence 2778 BP; 740 A; 538 C; 632 G; 868 T; 0 other; accggatggc cgcgcgattt ttttgtggtc cccgccacac gtgggttcca cagacgtcgc 60 tatcaaccaa tcaaattgca tcctcaaacg ttagataagt gtacatttgt ccttataaac 120 ttggtcccca agtttgttgt tcgcaatatg tgggatccac ttcttaatga atttcctgaa 180 tccgttcacg gatttcgttg tatgttagct attaaatatt tgcaggccgt tgaggaaacg 240 tatgagccca acactttggg ccacgattta attagggatc ttatatctgt tgtaagggct 300 cgtgactatg tcgaagcgac ccggcgatat aatcatttcc acgcccgtct cgaaggttcg 360 ccgaaggctg aacttcgaca gcccctacag cagccgtgct gctgccccca ttgtccaagg 420 cataaacaag cgccgatcat ggacgtacag gcccatgtac cgaaagccca gaatatacag 480 aatgtatcga agccctgatg ttccccgtgg atgtgaaggc ccatgtaaag tccagtctta 540 tgagcaacgg gatgatatta agcatactgg tattgttcgt tgtgttagtg atgttactcg 600 tggatccgga attacccaca gagtgggtaa gaggttctgt gttaaatcca tatatttttt 660 aggtaaagtt tggatggatg aaaatatcaa gaagcagaat cacactaatc aggtcatgtt 720 cttcttggtc cgtgatagaa ggccctatgg aagcagccca atggattttg ggcaggtttt 780 taatatgttc gataatgagc ctagtaccgc aaccgtgaag aatgatctcc gggataggtt 840 tcaagtgatg aggaaatttc atgctacagt tatcggtggg ccctctggaa tgaaggaaca 900 ggcattagtt aagagatttt ttagaattaa cagtcatgta acttataatc atcaggaggc 960 agccaagtat gagaatcata ctgagaatgc tttgttgttg tatatggcat gtactcatgc 1020 ctctaatcca gtgtatgcaa ctatgaaaat acgcatctat ttctatgatt caatatcaaa 1080 ttaataaaat ttatatttta tatcatgact ttcggttaca tttattgtgt tttcaagtac 1140 atcatataat acatgatcaa ctgctctgat tacattgtta atggaaatta caccaagaat 1200 atctaaatac ttaagaactt gatatctaaa tactcttaag aaacgaccag tctgaggctg 1260 taatgtcgtc caaattcgga agttgagaaa acatttgtga atccccagta ccttcctgat 1320 gttgtgattg aatcttatct gtattgaaat gatgtcgtgg ctcattagaa atggcctctc 1380 gtcgtggttg gtgatcttga aatacagggg attttcgatc tcccatataa aaacgccatt 1440 ctgggcttga tgagcagtga tgagttcccc ggtgcgtgaa tccatgattg atgcagttga 1500 tgtggaggta atatgagcat ccgcagtcga ggtctatgcg cttacgtctg actggcttag 1560 tcttcgctat gcggtgttgg attttgattg gcacttgaga acagtggctc gtagagggtg 1620 acgagggttg cattcttgag agccccattt tttaaggata tgtttttttc ttcgtctaga 1680 tattccctat atgaggaggt aggtcctgga ttgcagagaa agatagtggg aattccccct 1740 ttaatttgaa tgggtttccc gtattttgtg ttgctttgcc agtccctctg ggcccccatt 1800 aattccttga agtgctttaa ataatgcggg tttacgtcat caatgacgtt aaaccacgca 1860 tcattactgt atacctttgg acttaggtct agatgtccac ataaataatt atgtgggcct 1920 agagacctgg cccacattgt tttgcctgtt ctgctatcac cctcgatgac aatactatta 1980 ggtctccatg gccgcgcagc ggaagacatg acgttctctg acacccatac ttctagttcc 2040 tctggaactt gattaaaaga agaagataaa aatggagaaa tataaggagc cggaggctcc 2100 tgaaaaatcc tatctaaatt actatttaaa ttatgaaatt ggagtagaaa gtctcttggg 2160 gctttctcct tcagtatatt gagggcctga gctttggacc ctgcgttgat tgcctcggca 2220 tatgcgtcgt ttgcagattg gcaacctcct ctagctgatc ttccatcgac ctggaaaact 2280 ccatgatcaa ggatgtctcc gtctttctcc atgtaggttt tgacatcgct tgagctttta 2340 gctccctgaa tgttcggatg gaaatgtgct gacctggttg gggaggtgag gtcgaagaat 2400 ctattgttct tgcactggaa ctttccttcg aattggatga gaacatgcaa gtgaggagtc 2460 ccatcttcgt gaagctctct gcagattcta atgaattttt tggaagtggg tgtttggaga 2520 tttaataatt gggaaagtgc ttcctcttta gtaagagagc acttgggata agtgagaaaa 2580 taatttttgg catttatttt aaaccgattg ggggctgcca tgctgactta gtcaatcggt 2640 gtctctctct caatttgctc tatgtatcgg tgtactggag tcctatatat atggagactc 2700 taatggcata attgtaataa aagaacttta atttgaattt caaatgaaaa agcataaagc 2760 ggccatccgt ctaatatt 2778 //