ID HE814065; SV 1; circular; genomic DNA; STD; VRL; 2783 BP. XX AC HE814065; XX DT 08-JUL-2012 (Rel. 113, Created) DT 08-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE African cassava mosaic virus segment DNA-A, isolate Chad-Ndokono-TD2-2008 DE complete sequence XX KW complete viral segment. XX OS African cassava mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2783 RA Lett J.M.; RT ; RL Submitted (07-MAY-2012) to the INSDC. RL Lett J.M., Pole de Protection des Plantes, CIRAD-BIOS-UMR PVBMT, 7 Chemin RL de l'IRAT, 97410 Saint Pierre / Ile de La Reunion, FRANCE. XX RN [2] RA Zinga I., Harimalala M., De Bruyn A., Hoareau M., Mandakombo N., RA Semballa S., Reynaud B., Lefeuvre P., Lett J.M.; RT "East African cassava mosaic virus-Uganda (EACMV-UG) and African cassava RT mosaic virus (ACMV) reported for the first time in Central African Republic RT and Chad"; RL Unpublished. XX DR MD5; 6432270fd6ce96afb8803a723925fe0b. XX FH Key Location/Qualifiers FH FT source 1..2783 FT /organism="African cassava mosaic virus" FT /segment="DNA-A" FT /isolate="Chad-Ndokono-TD2-2008" FT /mol_type="genomic DNA" FT /country="Chad:South" FT /lat_lon="9.17 N 18.15 E" FT /isolation_source="Manihot esculenta" FT /collection_date="2008" FT /db_xref="taxon:10817" FT CDS 136..477 FT /gene="AV2 protein" FT /product="AV2" FT /db_xref="GOA:I7JBY2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I7JBY2" FT /protein_id="CCH63377.1" FT /translation="MWDPLVNEFPDSVHGLRCMLAIKYLQALEDTYEPSTLGHDLVRDL FT VSVIRARNYVEATRRYHHFHARLQGSSKAELRQPIQEPCYCPHCPRHKSKTGLGEQAHV FT QKAHDVQDV" FT CDS 296..1072 FT /gene="AV1" FT /product="coat protein (CP)" FT /db_xref="GOA:I7KIF0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I7KIF0" FT /protein_id="CCH63378.1" FT /translation="MSKRPGDIIISTPGSKVRRRLNFDSPYRNRATAPTVHVTNRKRAW FT VNRPMYRKPMMYRMYRSPDIPRGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTH FT RVGKRFCIKSIYILGKIWMDENIKKQNHTNNVMFYLLRDRRPYGNAPQDFGQIFNMFDN FT EPSTATIKNDLRDRFQVLRKFHATVIGGPSGMKEQALVKRFYRLNHHVTYNHQEAGKYE FT NHTENALLLYMACTHASNPVYATLKIRIYFYDSIGN" FT CDS complement(1069..1473) FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:I7II54" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I7II54" FT /protein_id="CCH63379.1" FT /translation="MDLRTGELITAPQAMNGVYTWEINNPLYFTITRHQQRPFLLNQDI FT ITVQVRFNHNLRKELGIHKCFLNFKIWTTLQPQTGLFLRVFRYQVLKYLDNIGVISIND FT VIRAATHVLFNVIAKTIECKLTHEIKFNLY" FT CDS complement(1214..1621) FT /gene="AC2" FT /product="transcriptional activator protein" FT /db_xref="GOA:I7KLJ2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I7KLJ2" FT /protein_id="CCH63380.1" FT /translation="MQSSSPSQNHSTQVPIKVNHRQFKKRAIRRRRVDLVCGCSYYLHI FT NCSNHGFTHRGTHHCSSSNEWRVYLGNKQSPVFHNHQTPTTTIPAEPGHHNCPGSIQSQ FT PEEGAGDSQMFSQLQDLDDLTASDWSFLKGL" FT CDS complement(1530..2606) FT /gene="AC1" FT /product="replication associated protein (Rep)" FT /db_xref="GOA:I7JVP6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I7JVP6" FT /protein_id="CCH63381.1" FT /translation="MRTPRFRIQAKNVFLTYPKCSIPKEHLLSFIQTLSLPSNPKFIKI FT CRELHQNGEPHLHALIQFEGKITITNNRLFDCVHPSCSTSFHPNIQGAKSSSDVKSYLD FT KDGDTVEWGQFQIDGRSARGGQQSANDAYAKALNSGSKSEALNVIRELVPKDFVLQFHN FT LNSNLDRIFQEPPAPYVSPFPCSSFDQVPDELEEWVADNVRDSAARPWRPNSIVIEGDS FT RTGKTIWARSLGPHNYLCGHLDLSPKVFNNAAWYNVIDDVDPHYLKHFKEFMGSQRDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKQEALKAWALKNAIFITLTEPLY FT SGSNQSQSQTIQEASHPA" FT CDS complement(2162..2572) FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I7JBZ0" FT /protein_id="CCH63382.1" FT /translation="MSFSHTQSVLYPKNTYYHSFRHSLSHPTLSSLKSAESCIRMGNLT FT CMPSSNSRVKSRLRTIVSSIVYTQAVAPVSTPTFKVPNQAQMSSPIWIRTETQSNGDNF FT RSMDDLLEAVNNPRMMLTPKRLTAAVSPKLLT" XX SQ Sequence 2783 BP; 742 A; 567 C; 697 G; 777 T; 0 other; accggttggc cccgcccccc tttaaacgtg gtccccgcgc actacgtatg tcggccaatc 60 atgtgatagc tgtaaaggtt atgtattagt ggtgggccac tatatacttg caggcgaagt 120 tgtggctagt gcgcaatgtg ggatccactg gtgaatgagt ttccagactc ggtgcatggg 180 cttaggtgta tgcttgcaat taaatatttg caggccttag aggatacata cgagcccagt 240 actttgggcc acgatttggt cagggatcta gtctcagtta tcagggctcg taattatgtc 300 gaagcgacca ggagatatca tcatttccac gccaggctcc aaggttcgtc gaaggctgaa 360 cttcgacagc ccatacagga accgtgctac tgcccccact gtccacgtca caaatcgaaa 420 acgggcctgg gtgaacaggc ccatgtacag aaagcccatg atgtacagga tgtatagaag 480 cccagacata cctaggggct gtgaaggccc atgtaaggtc cagtcgtttg agcagaggga 540 tgatgtgaag caccttggca tctgtaaggt gataagtgat gtgacccgtg ggcctgggct 600 gacacacagg gtcggaaaga ggttttgtat caagtccatt tacatccttg gtaagatctg 660 gatggatgaa aatattaaga agcagaatca cacgaataat gtgatgtttt acctgcttag 720 ggatagaagg ccgtatggca atgcgcccca agactttggg cagatattta acatgtttga 780 taacgagccc agtactgcca caattaagaa cgatttgagg gataggtttc aggtgttgag 840 gaaatttcat gccaccgtta tcggtggtcc ctctggcatg aaggagcagg cgttggtgaa 900 aaggttttac aggttgaacc atcacgtgac atataatcat caggaggcag ggaagtatga 960 gaatcacaca gagaatgctt tgcttctgta catggcatgt actcatgcct ccaaccctgt 1020 atatgcgacg ttgaaaatac gtatatactt ctatgacagt attggcaatt aataaagatt 1080 gaactttatt tcatgagtca acttacattc aatagttttg gcaattacat tgaacaaaac 1140 atgagtagca gctctaatta catcgttaat tgagataaca cctatattat ccaagtattt 1200 aagtacttgg tatctaaaga cccttaagaa aagaccagtc tgaggctgta aggtcgtcca 1260 gatcttgaag ttgagaaaac atttgtgaat ccccagctcc ttcctcaggt tgtgattgaa 1320 tcgaacctgg acagttatga tgtcctggtt cagcaggaat ggtcgttgtt ggtgtctggt 1380 gattgtgaaa tacaggggat tgtttatttc ccaggtatac acgccattca ttgcttgagg 1440 agcagtgatg agttcccctg tgcgtaaatc catgattgga gcagtttata tggaggtaat 1500 aggaacagcc acagacaaga tccactctcc tacgccggat ggctcgcttc ttgaattgtc 1560 tgtgattgac tttgattgga acctgagtag agtggttctg tgagggtgat gaagattgca 1620 ttctttaatg cccaggcctt tagcgcctct tgcttttcct cgtcgaggaa ctctttatag 1680 gacgaggtag gtcctggatt gcagaggaag atagtgggaa tgccaccttt aatttgaacg 1740 ggtttcccgt atttcgtgtt ggactgccag tccctttggg accccatgaa ttccttaaag 1800 tgctttaagt agtggggatc gacgtcatca atgacgttgt accatgcagc attattaaag 1860 acctttggac taaggtccag gtgtccacac aggtaattgt gtgggcctaa agatctggcc 1920 catatcgtct tccctgttct gctatcacct tctatgacaa tactattggg tctccatggc 1980 cgcgcagcgg aatccctaac attatcagcg acccattctt caagttcatc aggaacttgg 2040 tcaaaggaag aacatggaaa gggagaaaca taaggagctg gtggctcctg gaaaatccta 2100 tctaaattac tatttagatt gtgaaactga agtacaaagt cctttgggac caattcccta 2160 attacgttaa gagcttcgga cttactgccg ctgttaagcg ctttggcgta agcatcattc 2220 gcggattgtt gaccgcctcg agcagatcgt ccatcgatct gaaattgtcc ccattcgact 2280 gtgtctccgt ccttatccag ataggacttg acatctgagc ttgatttggc accttgaatg 2340 ttggggtgga aactggtgct acagcttggg tgtacacaat cgaagagacg attgttcgta 2400 atcgtgattt taccctcgaa ttggatgagg gcatgcaagt gaggttcccc attctgatgc 2460 agctctctgc agattttaat gaacttaggg ttggatggga gagagagtgt ctgaatgaat 2520 gatagtaggt gttctttggg tatagaacac tttgggtatg tgagaaagac attcttggct 2580 tgaatcctaa aacgaggagt tctcatgttg accaagtcaa ttggagacac tctcaattgg 2640 agacactctt gagcatctcc tcctattaat tggagacatt atatagttgt ctccaaatgg 2700 cattcctgta ataagtggaa ctttaatttg aatgaaaagg ctcaaaaggc gcggaacacc 2760 caaggggcca accgtataat att 2783 //