ID HE649912; SV 1; linear; genomic RNA; STD; VRL; 6864 BP. XX AC HE649912; XX DT 16-JAN-2012 (Rel. 111, Created) DT 26-MAR-2012 (Rel. 112, Last updated, Version 2) XX DE Schmallenberg virus RdRp gene for RNA-dependent RNA polymerase, segment L, DE genomic RNA, isolate BH80/11-4 XX KW . XX OS Schmallenberg virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Peribunyaviridae; Orthobunyavirus; OC Schmallenberg orthobunyavirus. XX RN [1] RP 1-6864 RA Hoeper D.; RT ; RL Submitted (03-JAN-2012) to the INSDC. RL Friedrich-Loeffler-Institute, Federal Resaerch Institute for Animal Health, RL Institue of Diagnostic Virology, Suedufer 10, Greifswald - Insel Riems RL 17493, GERMANY. XX RN [2] RC this article is the first description of the virus including its RC full-length genome sequence RX DOI; 10.3201/eid1803.111905. RX PUBMED; 22376991. RA Hoffmann B., Scheuch M., Hoper D., Jungblut R., Holsteg M., Schirrmeier H., RA Eschbaumer M., Goller K.V., Wernike K., Fischer M., Breithaupt A., RA Mettenleiter T.C., Beer M.; RT "Novel orthobunyavirus in cattle, europe, 2011"; RL Emerg. Infect. Dis. 18(3):469-472(2012). XX DR MD5; a42c12d6c13af9031407968e7edad955. DR EuropePMC; PMC3309600; 22376991. DR EuropePMC; PMC3407049; 22848676. DR EuropePMC; PMC3542112; 23326235. DR EuropePMC; PMC3709688; 23255627. DR EuropePMC; PMC4042763; 24648561. DR EuropePMC; PMC4228258; 24188175. DR EuropePMC; PMC4300748; 25410877. DR EuropePMC; PMC5264630; 28083834. DR EuropePMC; PMC6117295; 30166611. XX CC related sequences HE649913, HE649914. XX FH Key Location/Qualifiers FH FT source 1..6864 FT /organism="Schmallenberg virus" FT /segment="L" FT /host="Bos taurus" FT /isolate="BH80/11-4" FT /mol_type="genomic RNA" FT /country="Germany:North Rhine-Westphalia, Schmallenberg" FT /collection_date="2011" FT /db_xref="taxon:1133363" FT CDS 16..6780 FT /transl_table=1 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:H2AM11" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="InterPro:IPR029124" FT /db_xref="UniProtKB/Swiss-Prot:H2AM11" FT /protein_id="CCF55029.1" FT /translation="METYKINIFRDRINQCRSAEEAKDIVADLLMARHDYFGREVCYYL FT DIEFRQDVPAYDILLEFLPAGTAFNIRNCTPDNFIIHNGKLYIIDYKVSTDHAYGQKTY FT EKYTQIFGDALSELPFDFEVVIIRADPLRDTIHVNSNQFLEIFGPLNINLDFTWFFNLR FT SLIYEKYKDDDRFLEIVNQGEFTMTGPWIDEDTPELYSHPVFLEFYDSLDEMAKLTFHE FT SMTFDATRGEKWNQNLQKVINRYGNDYNIFVKEAAAGIFRCEGNYPKPNHDEITIGWNQ FT MVQRVSTERNLTQDVSKQKPSIHFIWGQPDETSNATTPKLIKIAKALQNISGESTYISA FT FRALGMLMDFSENTALYEAHTSKLKSMARQTSKRIDTKLEPIKIGTATIYWEQQFKLDT FT EIMNTKDKSHLLKDFLGIGGHVQFSKKTIDDLDTDKPTILDFNKKEVIDFCKFQYENVK FT KILSGDNNLERIGCYLEEYGANIASCSKDTWDQINQIGKSNYWACIKDFSVLMKNMLAV FT SQYNRHNTFRVVCCANNNLFGFVMPSSDIKAKRSTLVYFLAVLHSTPQNVMHHGALHAT FT FKTGSKYLSISKGMRLDKERCQRIVSSPGLFMLTTLMFAGDNPTLNLTDVMNFTFHTSL FT SITKAMLSLTEPSRYMIMNSLAISSHVRDYIAEKFGPYTKTSFSVVMANLIKRGCYMAY FT NQRDKVDMRNICLTDYEITQKGVRDNRDLSSIWFEGYVSLKEYINQIYLPFYFNSKGLH FT EKHHVMIDLAKTILDIERDQRLNIPGIWSTTPRKQTANLNITIYAVAKNLIMDTARHNY FT IRSRIENTNNLNRSICTISTFTSSKSCIKVGDFEKEKSSATKKAADCMSKEIKKYTIAN FT PEFVDEELLNATIRHSRYEDLKKAIPNYIDIMSTKVFDSLYQKIKRKEIDDKPTVYHIL FT SAMKNHTDFKFTFFNKGQKTAKDREIFVGEFEAKMCLYLVERISKERCKLNPDEMISEP FT GDSKLKKLEELAESEIRFTAATMKQIKERYLAEMGEASHMIAYKPHSVKIEINADMSKW FT SAQDVLFKYFWLFALDPALYLQEKERILYFLCNYMQKKLILPDEMLCSILDQRIKHEDD FT IIYEMTNGLSQNWVNIKRNWLQGNLNYTSSYLHSCSMNVYKDILKRAATLLEGEVLVNS FT MVHSDDNHTSIVMIQDKLDDDIVIEFSAKLFEKICLTFGNQANMKKTYITNFIKEFVSL FT FNIYGEPFSVYGRFILTSVGDCAFLGPYEDVASRLSATQTAIKHGAPPSLAWTAIALTQ FT WITHSTYNMLPGQINDPTSSLPSHDRFELPIELCGLINSELPTIAIAGLEADNLSYLVR FT LSKRMSPIHLCREPIQHQYENIHTWDISKLTQCDIFRLKLLRYMTLDSTMSSDDGMGET FT SEMRSRSLLTPRKFTTASSLSRLHSYADYQKTIQDQQKIEELFEYFIANPQLLVTKGET FT CEEFCMSVLFRYNSRKFKESLSIQNPAQLFIEQVLFANKPMIDYTSIHDRLFGIQDDPN FT INDATCIIGKKTFVETYQQIKIDVEKFTLDVEDIKTIYSFCIMNDPILVACANNLLISI FT QGVEMQRLGMTCCYMPEIKSLKVIYHSPALVLRAYVTDNYEQKGMEPDEMRRDIYHLEE FT FIEKTKLRTNMQGRIANNEIKLMKRDLKFEVQELTKFYQICYEYVKSTEHKIKIFILPK FT KAYTPIDFCSLVTGNLISDNKWMVVHYLKQITVPAKKAQIATSIDLEIQIAYECFRLIA FT HFADMFLNDDSKKAYINAIINTYTYKDVQVSSLYKKIKNSRLRSKIIPLLYHLGDLQQI FT DVDRFDAEKAEEQITWNNWQTSREFTTGPIDLSIKGYGRSIRIVGEDNKLTAAEMQLSR FT VRSDIVSRHGQALLNKPHGLKLEKMEPVTDLNPKLWYIAYQLREKKRYHYGVFSTSYIE FT EHNSRIEASRIRKTNKWIPVCPIAISKQSSDGKPSLAKIPMLNIGEIKFTKLQIAVDDH FT AMIRKAPFSKMVFFDGPPIQSGGIDIGKLMKNQNILNLRLDNIQSITLLDLCRIFSCRG FT SKVDQDAFEFLSDEPLDEDVIDELDSSPALVVSYTKKSTKSNSFKNVIVRALIRECDIF FT EDIMDITDDGFTSDSNLEVLENLTWILNMLATNQWSTELLACIHMCLYRNEMDHIYHNF FT QVPEIFVDNPISLNVKWDEVIMFLNILRDRDYKFEPWVSILNHSLTKAIEYAYKKMEEE FT RKQKSTGINKFLKGKKMGGRSKFDFQ" XX SQ Sequence 6864 BP; 2484 A; 1118 C; 1278 G; 1984 T; 0 other; ctaattacaa tcactatgga gacatacaag attaacattt ttagagatag gatcaaccag 60 tgtcgaagtg ctgaagaagc caaagacatt gttgctgatc ttctcatggc tagacatgac 120 tactttggta gagaggtatg ttattacctg gatatcgaat tccggcagga tgttccagct 180 tacgacatac ttcttgaatt tctgccagct ggcactgctt tcaacattcg caattgtaca 240 ccagacaatt ttatcattca caatggcaag ctttatatca ttgactataa agtatcaact 300 gatcatgcat atggtcaaaa aacttatgaa aagtacaccc agatctttgg agacgcattg 360 tcagaattgc cgtttgattt tgaagttgtg atcatccgtg ctgaccctct gcgagatact 420 atccatgtta attcaaatca attcttggaa atatttgggc cgctcaacat aaaccttgat 480 tttacttggt tctttaattt gcgatccctg atatatgaga aatataagga tgacgacaga 540 ttcctagaaa ttgtgaatca aggtgaattt acgatgactg gaccctggat tgatgaggat 600 accccggagc tctattcaca ccctgtcttt ttggaattct atgattcttt agatgagatg 660 gctaaactga cattccatga gtctatgaca tttgatgcaa ctcgcggtga gaaatggaat 720 caaaatctac aaaaggttat aaatagatat ggcaatgatt ataacatttt tgtgaaagag 780 gccgctgcag gaatctttag atgtgaaggg aactacccaa aaccaaatca tgatgaaatc 840 acaatcggtt ggaatcaaat ggttcaaaga gtgagtactg agagaaacct gactcaagat 900 gtcagcaagc aaaaaccatc tattcatttc atatggggtc aacctgacga aacatcaaat 960 gcgacaacac caaaactaat caagattgca aaagcactcc aaaatatttc tggcgagtct 1020 acatatataa gcgcattcag agcattgggt atgcttatgg acttttctga gaacacagct 1080 ttatatgaag cacacactag caaactaaaa agtatggcaa gacagacatc gaaaagaatt 1140 gatactaaac tggaaccaat caaaataggc acggcgacaa tttattggga acagcagttt 1200 aaactggata ctgaaataat gaatacaaaa gacaaatcac atttgctaaa agattttctt 1260 ggcatagggg gtcacgtgca attttcaaaa aagaccattg acgatttgga tactgacaaa 1320 cctactatat tagatttcaa caaaaaggaa gtcattgatt tttgcaaatt ccagtatgaa 1380 aatgtaaaga aaatactatc cggagataat aatctagagc gtataggatg ttatttagaa 1440 gaatatggtg caaatattgc atcatgttca aaggatacat gggatcagat taaccagata 1500 gggaagtcaa attactgggc ttgtattaaa gatttttcag tcttgatgaa aaatatgttg 1560 gcagtttctc aatataatag gcacaatact tttcgtgtag tgtgttgtgc aaacaataat 1620 ctgtttgggt ttgtaatgcc ttcttctgat attaaagcaa agcgatccac acttgtttac 1680 ttcttagctg tgttgcattc tactcctcag aatgtgatgc accacggtgc attgcatgcg 1740 acatttaaaa ctggttcaaa ataccttagt atctctaaag gaatgcgttt agataaagaa 1800 cgatgtcaac gcatagttag ttcaccggga ctttttatgt tgactacatt gatgtttgca 1860 ggagacaatc cgacactcaa tttgactgat gtcatgaatt ttacattcca cacttccctg 1920 tctataacca aagctatgct gtcattgaca gaaccatcaa gatatatgat aatgaattca 1980 ttagccatat ccagtcatgt tagagattat atagcagaaa aatttggccc ttatacaaag 2040 accagcttct ctgtagtaat ggcaaacttg attaaaaggg gatgttatat ggcatataat 2100 caaagagata aagtagacat gaggaatatc tgcctaacag attatgaaat aactcaaaaa 2160 ggtgtgagag ataacagaga cctatcatca atctggtttg aaggctatgt atcactaaaa 2220 gaatatatta accaaatata tctaccattt tacttcaatt caaaaggttt gcatgaaaag 2280 catcatgtta tgatagatct ggctaagaca atcttagata tagaaaggga ccagagatta 2340 aatatcccag gaatatggtc tacaacacct agaaaacaaa ctgcaaattt aaatataact 2400 atctatgcag ttgcaaaaaa tctaataatg gacactgcta gacataatta tattagatca 2460 cggatagaaa acacaaacaa cttaaataga tcgatatgca ctatttctac attcaccagc 2520 tctaaatcat gtattaaagt aggcgacttt gagaaagaaa aaagctcagc aacaaaaaag 2580 gctgcagatt gcatgtcaaa agagataaag aagtatacaa ttgcaaaccc agaatttgtt 2640 gatgaagagt tactaaatgc aactataaga cattcacgct atgaagactt aaaaaaagca 2700 atcccgaatt atattgacat tatgtcaact aaagtatttg attctctgta ccagaaaata 2760 aaaaggaagg agatagatga taaacccact gtgtatcata tactctctgc tatgaagaat 2820 cacacagatt ttaagtttac attctttaac aaaggccaaa aaacagcaaa ggatagggaa 2880 atattcgtag gcgaatttga ggcaaaaatg tgcttgtatt tagtggagag gatatctaaa 2940 gaacgctgta agttgaatcc agatgagatg attagtgaac caggcgattc taaattgaaa 3000 aaattagaag agcttgcaga gtctgaaata cgattcacag cagcaactat gaaacagatc 3060 aaagaacgct atttagcaga aatgggagaa gcaagccata tgatcgcata taaaccacat 3120 tctgttaaga ttgaaatcaa tgcagacatg tcaaaatgga gtgcccaaga tgttttattc 3180 aaatatttct ggttgtttgc attagatccc gcactttatc tgcaagaaaa agaaaggata 3240 ttgtacttcc tatgcaatta tatgcaaaaa aagctaattc tgcctgatga aatgctctgt 3300 agcatccttg accaacgtat caaacatgag gatgatataa tatatgaaat gaccaatggc 3360 ttatcgcaaa attgggtcaa tattaaacgg aactggctgc aggggaatct caattacaca 3420 agtagctacc tacattcatg ttctatgaat gtttataagg atattctaaa gagagcagcc 3480 actttactag aaggggaagt tttagtcaat tctatggttc attctgatga caatcacact 3540 tcaatagtga tgatccaaga taaattagat gatgatattg ttattgaatt ttctgcaaaa 3600 ctatttgaaa aaatatgtct aacttttgga aatcaagcaa atatgaagaa gacatatata 3660 acaaatttca taaaggagtt cgtttcactt tttaatattt atggtgagcc attttctgtt 3720 tatggtcgct ttattttgac atctgttggc gattgtgctt ttcttggacc atatgaggat 3780 gttgccagta ggttgtctgc aacgcagaca gcaattaagc atggagcacc tccatcactt 3840 gcatggactg ctattgcatt aactcagtgg ataacacata gcacatataa catgcttcca 3900 ggtcaaatca atgatcctac ttcatcttta cctagtcatg atagatttga gctgcctata 3960 gaattgtgtg gcttaataaa ttcagaatta cccactatag ctatagcagg tttggaagca 4020 gataatctaa gttatttagt taggttatca aaaagaatgt cccctataca tctttgccgt 4080 gaaccaatcc agcatcaata tgagaatata catacatggg atataagtaa actgacacaa 4140 tgtgatattt tcagacttaa gcttttaaga tacatgacgt tagactcaac tatgtcatct 4200 gatgatggaa tgggcgaaac tagtgaaatg agatctaggt ctcttctgac accaagaaaa 4260 ttcactactg caagttcgtt atctagattg cattcatatg ctgattatca aaaaacaata 4320 caagaccaac agaaaattga agaattattt gaatatttta tagccaaccc tcaactattg 4380 gttacaaaag gtgagacttg tgaagagttc tgtatgtctg tattgttcag atacaacagt 4440 cgtaaattta aagaatcatt gtctattcaa aacccagctc agctcttcat agaacaagta 4500 ttgtttgcaa ataaaccaat gatagactat acaagtattc atgataggtt gtttggtata 4560 caagatgacc caaatataaa tgatgctaca tgtattattg gcaagaagac ttttgttgaa 4620 acatatcagc aaataaaaat tgatgtagaa aaatttacac ttgatgtaga ggatataaag 4680 acgatatata gcttctgtat aatgaacgac cctatattag ttgcttgtgc aaacaacttg 4740 ttaatttcaa tacagggagt ggagatgcaa cgattgggta tgacatgctg ttatatgccg 4800 gagattaaga gccttaaagt aatttatcat agtcctgctc tcgtattacg tgcttatgta 4860 acagataact atgagcaaaa agggatggag ccagatgaaa tgcggagaga tatatatcat 4920 ttagaagaat ttatagagaa gacaaaattg aggacaaata tgcaagggag aattgcaaat 4980 aatgaaatta agttaatgaa gcgagatttg aaatttgaag tgcaggaatt gactaaattc 5040 tatcagatct gttatgaata tgtgaaatca acagaacaca aaattaaaat attcatcctt 5100 ccaaaaaagg cttacactcc cattgatttc tgctcattag taacaggtaa tctgatatca 5160 gacaacaaat ggatggttgt tcactattta aaacaaataa ctgtcccagc aaagaaggca 5220 caaatagcca catctataga tctggaaata caaatagcct acgaatgttt caggctaatt 5280 gcacattttg ctgatatgtt cctaaatgat gactccaaaa aagcttatat taatgcaatt 5340 attaacacat atacatacaa ggatgttcaa gtatccagtc tctacaagaa aatcaaaaat 5400 tcgagactac gttcaaaaat tataccatta ttatatcacc tgggcgattt gcaacaaata 5460 gacgttgaca gatttgatgc agaaaaagca gaagagcaga tcacatggaa taactggcaa 5520 acatctcgag aatttactac tggtccaatt gatctatcaa tcaaaggtta tggacggtca 5580 ataaggatcg taggtgagga caacaagctt acagctgcag aaatgcaatt gtcaagagtg 5640 agaagtgata tagtatcaag gcatggacag gctttattga acaaacctca tgggctaaaa 5700 ttagagaaaa tggaaccagt gactgatcta aatcctaaat tatggtatat tgcataccaa 5760 ttgcgtgaga aaaagcggta tcactatggg gtctttagta catcttatat agaagagcat 5820 aactcaagga tagaagcatc tcggatacgt aagactaata aatggatacc agtttgccct 5880 attgctatat caaaacaatc atctgatgga aagcctagtc ttgcaaaaat ccctatgtta 5940 aatattgggg agattaaatt tacaaaacta cagattgcag tagatgatca tgcaatgatt 6000 aggaaagccc catttagtaa gatggtgttc tttgatggcc cacccataca gagcggtggc 6060 attgacattg gaaagcttat gaagaaccaa aatattctca atttgaggtt agataatata 6120 cagagtataa cattattaga tttgtgccgc atattttcat gccgagggtc taaagtggat 6180 caagatgcat ttgaattctt atctgatgaa cctttggatg aagatgttat tgatgaatta 6240 gatagctcac ctgcattagt ggtatcttac acaaagaaat caaccaaatc caatagtttc 6300 aaaaatgtta tagttagagc attgataaga gaatgtgata tatttgaaga tataatggac 6360 ataacagacg atggattcac atctgatagc aatctagagg tgttagaaaa cttaacatgg 6420 attttaaata tgctcgcaac aaatcagtgg tctacagaac tgttagcatg catacacatg 6480 tgtttatatc gcaatgagat ggatcatatc tatcacaatt ttcaagttcc agaaatattt 6540 gtcgacaatc caatctcatt aaatgtaaag tgggatgaag taattatgtt cttaaacata 6600 ctgcgagaca gagattacaa atttgagcca tgggtgtcta tactgaatca ttccttaact 6660 aaagctatag agtatgctta caaaaagatg gaagaggaga ggaagcagaa atcaacaggc 6720 atcaacaaat tcttaaaggg taaaaaaatg ggtggcagat caaagtttga tttccagtag 6780 cttgatctta aataatacat aatctttgcc ccaaatctgt attatataaa taattctaaa 6840 gtagtttcat gtaattaggg gcac 6864 //