ID HE603245; SV 1; circular; genomic DNA; STD; VRL; 2780 BP. XX AC HE603245; XX DT 12-DEC-2011 (Rel. 111, Created) DT 12-DEC-2011 (Rel. 111, Last updated, Version 1) XX DE Tomato yellow leaf curl virus complete genome, isolate New Caledonia:La DE Foa:2010 XX KW complete genome. XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2780 RA Lett J.M.; RT ; RL Submitted (12-OCT-2011) to the INSDC. RL Lett J.M., CIRAD-BIOS-UMR PVBMT, Pole de Protection des Plantes, 7 Chemin RL de l'IRAT, 97410 Saint Pierre / Ile de La Reunion, FRANCE. XX RN [2] RA Perefarres F., De Bruyn A., Kraberger S., Hoareau M., Barjon F., RA Lefeuvre P., Pellegrin F., Gallois R., Varsani A., Lett J.M.; RT "Occurrence of the Israel strain of Tomato yellow leaf curl virus in New RT Caledonia and Loyalty Islands"; RL Unpublished. XX DR MD5; 43b983c89348db60420db8d61757b9c3. XX FH Key Location/Qualifiers FH FT source 1..2780 FT /organism="Tomato yellow leaf curl virus" FT /strain="Israel" FT /isolate="New Caledonia:La Foa:2010" FT /mol_type="genomic DNA" FT /country="New Caledonia" FT /lat_lon="21.72 S 165.83 E" FT /isolation_source="Solanum lycopersicum" FT /collected_by="Frederic Barjon" FT /collection_date="18-Nov-2010" FT /db_xref="taxon:10832" FT CDS 147..497 FT /gene="MP" FT /product="movement protein (MP)" FT /db_xref="GOA:G8ZED7" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:G8ZED7" FT /protein_id="CCE21602.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLQGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PKAPKIQKRSKP" FT CDS 307..834 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:G8ZED8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:G8ZED8" FT /protein_id="CCE21603.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRPMYRKPPKYRKDRSPDVPPGCEGPCKVQSYEQRGDIKHTRIGRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPHGSSPMDFGQVFNMFDN FT EPSTPPPKKRIA" FT CDS complement(1081..1485) FT /gene="REn" FT /product="replication enhancer protein" FT /db_xref="GOA:G8ZED9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G8ZED9" FT /protein_id="CCE21604.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKTTEHSQRPFLMNHDI FT ISIQIRFNHNIRKVMGIHKCFLNFRIWRTLQPQTGHFLRVFRYEVLKYLDSLGVISINN FT VIRAVDHVLYDVLENTINVIETHDIKYKFY" FT CDS complement(1226..1633) FT /gene="TrAP" FT /product="transcriptional activator protein" FT /db_xref="GOA:G8ZEE0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:G8ZEE0" FT /protein_id="CCE21605.1" FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHL FT NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRTQPAAISNEPRHHFHSDKIQPQ FT HQEGNGDSQMFSQLPNLEDITASDWSFLKSI" FT CDS complement(2126..2614) FT /gene="Rep" FT /product="replication associated protein" FT /db_xref="GOA:G8ZEE1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G8ZEE1" FT /protein_id="CCE21606.1" FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEAALSQLKNLETPINKKYIKVC FT RELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK FT DGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGNKSEALNILKEKAPKDYVLHFII" FT CDS complement(2170..2463) FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A1KQR1" FT /protein_id="CCE21607.1" FT /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTDQHISIRTFRQLRAQ FT QMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAINPRPSIY" XX SQ Sequence 2780 BP; 765 A; 553 C; 600 G; 862 T; 0 other; accggatggc cgcgcctttt ccttttatgt ggtccccacg agggtccaca gaagtcactg 60 tcaaccaatc aaattgcata ctcaaacgtt agataagtgt tcatttgtct ttatatactt 120 ggtccccaag tattttgtat tgcaatatgt gggacccact tctaaatgaa tttcctgaat 180 ctgttcacgg atttcgttgt atgttagcta ttaaatattt gcagtccgtt gaggaaactt 240 acgagcccaa tacattgggc cacgatttaa ttagggatct tatatctgtt gtaagggccc 300 gtgactatgt cgaagcgacc aggcgatata atcatttcca cgcccgtctc caaggttcgc 360 cgaaggctga acttcgacag cccatacagc agccgtgctg ctgtccccat tgtccaaggc 420 acaaacaagc gacgatcatg gacgtacagg cccatgtacc gaaagccccc aaaatacaga 480 aaagatcgaa gccctgatgt tccccctgga tgtgaagggc cctgtaaagt ccagtcttat 540 gagcaacggg gtgatattaa gcacacccgg attggtcgtt gtgttagtga tgttactcgt 600 ggatctggga ttactcacag agtgggtaag aggttctgtg ttaaatccat atatttttta 660 ggtaaagtct ggatggatga gaatatcaag aaacagaatc acactaatca ggtcatgttc 720 tttttggtcc gtgatagaag gccccatgga agcagtccaa tggattttgg acaggttttt 780 aatatgttcg ataatgagcc cagtacccca cccccgaaaa aaagaattgc gtgataaggt 840 tccagtgatg agaaaatatc atgcaccagt tattggtggg gcccctggga tgaaagaaca 900 ggcattagtt aagagatttt ttaaaattaa cagtcatgta acttataatc atcacgaggc 960 agccgagtac gagaaccata ctgaaaacgc cctgttattg tatatggcat gtacgcatgg 1020 ctctaatcca gtgtatgcga ctatgaaaat acacatctat ctctatgagt caatatcaaa 1080 ttaataaaat ttatatttta tatcatgagt ttctattaca tttattgtgt tttcaagtac 1140 atcatacaat acatgatcaa ctgctctgat tacattgtta atggaaatta caccaagact 1200 atctaaatac ttaagaactt catatctaaa tactcttaag aaatgaccag tctgaggctg 1260 taatgtcctc caaattcgga agttgagaaa acatttgtga atccccatta ccttcctgat 1320 gttgtggttg aatcttatct gaatggaaat gatgtcgtgg ttcattagaa atggccgctg 1380 gctgtgttct gttgtcttga aatagagggg attgtttatc tcccaaataa aaacgccatt 1440 ctctgcctga ggagcagtga tgagttcccc tgtgcgtgaa tccatgattg ttgcagttga 1500 ggtggaggta gtatgagcat ccacagtcta ggtctacacg cttacgcctt attggtttct 1560 tcttggctat cttgtgttgg accttgattg atacttgcga acagtggctc gtagagggtg 1620 acgaaggttg cattcttgag cgcccaattt ttcaaggata tatttttttc ttcgtctaga 1680 tattccctat atgaggaggt aggtcctgga ttgcagagga agatagtggg aattccccct 1740 ttaatttgaa tgggcttccc gtactttgtg ttgctttgcc agtccctctg ggcccccatg 1800 aattccttga agtgctttaa ataatgcggg tctacgtcat caatgacgtt gtaccacgca 1860 tcattactgt acacctttgg gcttatgtct agatgtccac ataaataatt atgtgggcct 1920 atagacctgg cccacattgt tttgcctgtc ctactatcac cctcaattac aatacttatg 1980 ggtctccatg gccgcgcagc ggaagacacg acgttctcag cgacccaccc ttcaagttca 2040 tctggaactt gattaaaaga agaagaaaga aatggagaaa cataaacttc taaaggagga 2100 ctaaaaatcc tatctaaatt tgaacttaaa ttatgaaatg taaaacatag tcctttgggg 2160 ccttctcttt taatatattg agggcctcgg atttattgcc tgaattgagt gcttcggcat 2220 atgcgtcgtt ggcagattgc tgacctcctc tagctgatct gccatcgatt tggaaaactc 2280 caaaatcaat gaagtctccg tctttctcca cgtaggtctt gacatctgtt gagctcttag 2340 ctgcctgaat gttcggatgg aaatgtgctg atctgtttgg ggataccagg tcgaagaacc 2400 gttggttctt acattggtat ttgccttcga attggataag cacatggaga tgtggttccc 2460 cattctcgtg gagttctctg caaactttga tgtatttttt atttattggg gtttctaggt 2520 tttttaattg ggaaagtgct gcctctttag agagagaaca attgggatat gttaggaaat 2580 aatttttggc atatatttta aataaacgag gcatgttgaa atgaatcggt gtccctcaaa 2640 gctctatggc aatcggtgta tcggtgtctt atttatacct ggacacctaa tggctatttg 2700 gtaatttcgt aaaagtacat tgcaattcaa aattcaaaat tcataaatca aatcattaaa 2760 gcggccatcc gtataatatt 2780 //