ID GU563325; SV 1; linear; genomic RNA; STD; VRL; 2183 BP. XX AC GU563325; XX DT 13-DEC-2010 (Rel. 107, Created) DT 26-JAN-2011 (Rel. 107, Last updated, Version 2) XX DE Cassava brown streak virus isolate ZANZ polyprotein gene, partial cds. XX KW . XX OS Cassava brown streak virus OC Viruses; Riboviria; Potyviridae; Ipomovirus. XX RN [1] RP 1-2183 RX DOI; 10.1016/j.jviromet.2010.09.024. RX PUBMED; 20923689. RA Mbanzibwa D.R., Tian Y.P., Tugume A.K., Mukasa S.B., Tairo F., RA Kyamanywa S., Kullaya A., Valkonen J.P.; RT "Simultaneous virus-specific detection of the two cassava brown RT streak-associated viruses by RT-PCR reveals wide distribution in East RT Africa, mixed infections, and infections in Manihot glaziovii"; RL J. Virol. Methods 171(2):394-400(2011). XX RN [2] RP 1-2183 RA Mbanzibwa D.R., Tian Y., Tugume A.K., Mukasa S.B., Tairo F., Kyamanywa S., RA Kullaya A., Valkonen J.P.T.; RT ; RL Submitted (25-JAN-2010) to the INSDC. RL Department of Agricultrual Sciences, University of Helsinki, RL Latokartanonkaari 7, Helsinki, Helsinki 00790, Finland XX DR MD5; b400faab6b5671d7dc79201e106277f1. DR EuropePMC; PMC6472602; 31007377. XX FH Key Location/Qualifiers FH FT source 1..2183 FT /organism="Cassava brown streak virus" FT /host="cassava" FT /isolate="ZANZ" FT /mol_type="genomic RNA" FT /country="Tanzania" FT /collected_by="Deusdedith R. Mbanzibwa" FT /collection_date="2008" FT /db_xref="taxon:137758" FT CDS <1..2088 FT /codon_start=1 FT /product="polyprotein" FT /note="pol" FT /db_xref="GOA:E5DUE6" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR002637" FT /db_xref="InterPro:IPR027502" FT /db_xref="InterPro:IPR029001" FT /db_xref="UniProtKB/TrEMBL:E5DUE6" FT /protein_id="ADR73020.1" FT /translation="VAILEWERGDEVMRTRSALNAAYIESFGYDDLMTEIERYAVFWAS FT EKGCEYPLLDRKRVEGLYLDEYTDINEEWLSGILPPSFENCYIDLQVVDRSQSTNVAKR FT EEEVTSKIRMGIEAPITFVTGNAQKLKEVKQIFGPTIPIVSRKVDLPEPQGTVEEIIKE FT KARVAAELVGGPVLVEDTSLCFDALNGLPGPYIKWFMEGIGLEGLYRLVEPYQNKMASA FT LCVFAFVNKVGDDPIIFKGVLRGEIVMPRGPNSFGWDPIFQPLNWRRTFAEMMPEEKNI FT LSHRFRALSLVRDFLKNSSYFSFAKGVDRDLFIDVQAIDKDEIEAEITKLKEMWRNNKP FT TRTRSPFESKRLRAPQVARVNELLKQLKDAGIQTSKRPCGEPDEGEVASPESSDDEEHQ FT TNKGKAPMESPTERNQSEKPIGEEEEKHKKTRFRIRAGGGSEKRDDIDKIPTNALEFRK FT SFKPPKVSQAAYVWIPRSQRDNLTPDVIQNFLAYVPPSHAIDNQLAPGVEVENWAIEVS FT KAYGVTTQEFYRTILPAWIVNCIVNGTSDERKNEKSWRAVELNAQGEDIDDSEYPMEPM FT YKFALPTMRKIMRNFSSQAILMYQNSVTAGKAFVIKAARNAGYTSIENKWLGIDFLAEA FT QLSQSQLDIKHQILAVNVGRNKTKLFALAAPGDDNNVDKERHTTRDVSATRHSYAGAAI FT E" FT mat_peptide <1..273 FT /product="NIb" FT mat_peptide 274..951 FT /product="HAM1-like protein" FT mat_peptide 952..2085 FT /product="CP" FT 3'UTR 2089..2183 XX SQ Sequence 2183 BP; 699 A; 353 C; 561 G; 570 T; 0 other; gttgcaatac ttgagtggga aagaggagac gaggtcatga ggacgagaag cgctctcaat 60 gcagcttaca tcgagagctt tggttatgat gatttgatga cagagattga gaggtatgct 120 gtattctggg catctgaaaa gggttgtgag tacccattgt tggacagaaa gcgagttgaa 180 gggctttact tggatgaata tactgatatt aacgaggaat ggctgagtgg aatcttacca 240 ccatctttcg agaattgtta cattgactta caagtggtgg acaggtctca gtcaacgaat 300 gttgctaaga gagaggaaga agttactagt aaaattcgaa tggggatcga agcaccaatt 360 acatttgtca cagggaatgc acaaaaattg aaagaagtga aacaaatctt tggtcccact 420 attccaattg tttctcggaa agttgattta ccagaaccac aagggacggt tgaggagatt 480 atcaaagaaa aagcacgagt ggctgctgaa ctcgttggag ggccagtttt agtagaagac 540 acgagtttgt gttttgatgc tctcaatggt ctcccaggac catacattaa gtggtttatg 600 gaagggattg gactagaagg attgtatagg ttggtggaac catatcagaa taaaatggct 660 agcgctctct gcgtgtttgc ttttgtgaat aaagttggtg atgatcctat aatctttaag 720 ggtgtgctaa gaggtgagat tgtgatgcca cgcggaccaa attcatttgg gtgggaccca 780 atttttcagc cgcttaactg gagaaggaca tttgctgaga tgatgcctga ggagaaaaat 840 atattatctc atcgatttcg agctctgtcg ttggtgagag actttttgaa gaactcgagc 900 tatttcagct ttgcaaaggg cgttgatcgt gatttattta ttgatgttca agcaattgac 960 aaggatgaga ttgaagctga aataacaaaa ttaaaggaaa tgtggaggaa caacaagcca 1020 actagaactc gaagtccatt tgaatcaaag aggcttcgtg ctcctcaagt ggcccgtgtg 1080 aatgaactgc ttaaacaact gaaagatgct gggatacaaa caagtaagag gccatgtgga 1140 gaacctgatg aaggagaagt cgctagccca gagtcaagcg acgatgagga gcaccaaaca 1200 aacaaaggaa aggcgcctat ggaatcacct actgaaagga atcaatcaga gaaacctata 1260 ggtgaggagg aggagaaaca taagaagaca aggttcagaa taagagctgg tggtggaagt 1320 gaaaagagag atgacataga taagattcca accaacgctt tagaatttcg aaagagcttc 1380 aaaccaccaa aagtgtcaca agcagcatat gtgtggatac cgcgttcgca aagagataat 1440 ttgacgcctg acgtcataca gaactttcta gcgtacgtgc caccatcaca tgctatagac 1500 aatcaattgg cccctggagt tgaagttgag aattgggcca tcgaagtttc aaaagcttat 1560 ggagtcacca ctcaagagtt ttataggacg atcctacctg cttggattgt caattgtatt 1620 gtgaatggga ctagcgatga gaggaagaat gagaaatcgt ggagagctgt tgagttaaat 1680 gcacagggcg aggatattga tgattcagag tatcctatgg aaccaatgta caaatttgct 1740 ctcccgacaa tgaggaaaat aatgaggaat ttttccagcc aagcaattct tatgtatcag 1800 aatagtgtga ctgctggaaa agcttttgtg ataaaagcag cccgaaatgc tgggtataca 1860 agcattgaaa acaagtggtt gggtattgac ttcctagccg aagcacaatt gtcacaaagc 1920 caacttgata tcaaacatca aatattggct gttaatgttg gtagaaataa aactaagttg 1980 tttgctttag ctgctcctgg tgatgataat aatgtggata aagaaaggca cactacgcgg 2040 gatgttagtg caactaggca tagctatgct ggtgctgcta ttgagtaaat taatttgaaa 2100 gtcaagtttg gtggagtttt aggtagcttg ttatatcttg gttgtgaagc caagatatat 2160 tcaggagacc tttctccata tcc 2183 //