ID GU563323; SV 1; linear; genomic RNA; STD; VRL; 2129 BP. XX AC GU563323; XX DT 13-DEC-2010 (Rel. 107, Created) DT 26-JAN-2011 (Rel. 107, Last updated, Version 2) XX DE Cassava brown streak virus isolate WETE polyprotein gene, partial cds. XX KW . XX OS Cassava brown streak virus OC Viruses; Riboviria; Potyviridae; Ipomovirus. XX RN [1] RP 1-2129 RX DOI; 10.1016/j.jviromet.2010.09.024. RX PUBMED; 20923689. RA Mbanzibwa D.R., Tian Y.P., Tugume A.K., Mukasa S.B., Tairo F., RA Kyamanywa S., Kullaya A., Valkonen J.P.; RT "Simultaneous virus-specific detection of the two cassava brown RT streak-associated viruses by RT-PCR reveals wide distribution in East RT Africa, mixed infections, and infections in Manihot glaziovii"; RL J. Virol. Methods 171(2):394-400(2011). XX RN [2] RP 1-2129 RA Mbanzibwa D.R., Tian Y., Tugume A.K., Mukasa S.B., Tairo F., Kyamanywa S., RA Kullaya A., Valkonen J.P.T.; RT ; RL Submitted (25-JAN-2010) to the INSDC. RL Department of Agricultrual Sciences, University of Helsinki, RL Latokartanonkaari 7, Helsinki, Helsinki 00790, Finland XX DR MD5; e59539e54a018de3929320edf507b83a. XX FH Key Location/Qualifiers FH FT source 1..2129 FT /organism="Cassava brown streak virus" FT /host="cassava" FT /isolate="WETE" FT /mol_type="genomic RNA" FT /country="Tanzania" FT /collected_by="Deusdedith R. Mbanzibwa" FT /collection_date="2008" FT /db_xref="taxon:137758" FT CDS <1..2034 FT /codon_start=1 FT /product="polyprotein" FT /note="pol" FT /db_xref="GOA:E5DUE4" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR002637" FT /db_xref="InterPro:IPR027502" FT /db_xref="InterPro:IPR029001" FT /db_xref="UniProtKB/TrEMBL:E5DUE4" FT /protein_id="ADR73018.1" FT /translation="LNAAYIESFGYDDLMTEIERFAVFWASEKGCEYPLLDRKRVEGLY FT LDEHTDINEEWLSGILPPSFENCYIDLQVVDRPQLSSMTKREEEVTSKVRMGIEAPITF FT VTGNAQKLKEVKQIFGPTIPIISRKVDLPEPQGTVEEIIKEKARVASELIGGPVLVEDT FT SLCFDALNGLPGPYIKWFMEGIGLEGLYKLVEPYQNKMASALCVFAFINKVGDDPIIFK FT GVLRGEIVMPRGPNSFGWDPIFQPINWRRTFAEMMAEEKNMISHRFRALSLVRDFLKDS FT SYFSFAKGVDRDFFIDVQAIDKDEIEAEITKLKELWRNNKPTRNRSPFESRRLRAPQVA FT RVNELLKQLKDAGIQTSKRPCGEPDEGEVASPESSEDEEQRTNKGKAPMEPPAERNQPE FT KSVGEDEEKHKKTRFRIRAGGGDEKRDDIDKIPTNALEFRKSFKPPKVSQAAYVWIPRS FT QRDNLTPDVIQNFLAYVPPSHAIDNQLASGVEVENWAIEVSKAYGVTIQEFYRTILPAW FT IVNCIVNGTSDERKNEKSWRAVELNAQGEDIDDSEYPMEPMYKFALPTMRKIMRNFSSQ FT AILMYQNSVTAGKAFVIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANV FT GRSKTKLFALAAPSDDNNVDKERHTTRDVSATRHSYAGAAIE" FT mat_peptide <1..219 FT /product="NIb" FT mat_peptide 220..897 FT /product="HAM1-like protein" FT mat_peptide 898..2031 FT /product="CP" FT 3'UTR 2035..>2129 XX SQ Sequence 2129 BP; 696 A; 349 C; 527 G; 557 T; 0 other; cttaatgcag cttacattga gagttttggt tatgatgatt taatgacaga gattgaaagg 60 tttgctgtgt tctgggcatc tgaaaagggt tgtgagtacc cgttattgga tagaaagcga 120 gttgaagggc tttacttgga tgaacacact gatattaatg aggaatggtt gagtggcatc 180 ctaccaccat cttttgagaa ttgctacatt gatttacagg tggtagacag gcctcagtta 240 tcgagcatga ctaagagaga ggaagaagtc acaagtaaag ttcggatggg gatcgaagcg 300 ccaattacat tcgtaacagg gaatgcacaa aaattgaagg aagtaaaaca aatctttggt 360 cccactattc caatcatctc tcggaaagtt gacttgccag aaccacaagg aacagttgag 420 gaaattatta aggaaaaagc acgtgtagcg tctgagttga ttggagggcc agttctcgta 480 gaagatacaa gtttgtgttt tgatgctctc aatggtctcc caggaccata cattaagtgg 540 tttatggaag gaattggact agaaggatta tacaagttgg tggagccata tcaaaataaa 600 atggctagtg ctctctgtgt gtttgctttt ataaataaag ttggcgatga tcctataatc 660 tttaagggtg tgctaagagg tgagattgta atgccacgcg gaccaaactc atttgggtgg 720 gatccaattt tccagccaat taactggaga aggacatttg ctgagatgat ggccgaggag 780 aaaaatatga tatctcatcg atttcgagct ctgtcgctgg taagagactt tttgaaggac 840 tcaagctatt tcagctttgc aaagggcgtt gatcgtgatt tcttcattga tgtccaagca 900 attgacaagg atgaaattga agctgaaata acaaaattga aggaattgtg gaggaacaac 960 aagccaacta gaaatcgaag tccatttgaa tcaaggaggc ttcgtgcccc tcaagtagct 1020 cgtgtgaacg agctgctcaa acaactgaaa gatgctggga ttcaaacaag taaaaggcca 1080 tgtggagaac ctgatgaagg ggaagttgct agtccagagt caagtgagga tgaggagcaa 1140 cgaacaaaca aaggaaaagc acctatggaa ccacctgccg agcgaaatca accagagaag 1200 tctgtaggtg aagatgagga gaaacataaa aagacaaggt tcagaataag agctggtggt 1260 ggagatgaaa agagagatga tatagataag attccaacca atgctctaga attccggaag 1320 agtttcaaac caccaaaagt gtcacaagcg gcatatgtgt ggataccgcg ttcgcaaaga 1380 gacaatttga cacctgatgt catacagaac tttctagcgt acgtgcctcc atcacatgct 1440 atagacaacc aattggcttc cggagttgaa gttgagaatt gggccatcga agtctcaaaa 1500 gcttatggag tcaccattca agagttttat agaacgatcc tacctgcttg gattgttaat 1560 tgtattgtga atgggactag cgatgagagg aagaatgaga aatcgtggag agctgttgag 1620 ctaaatgcac agggtgagga tattgatgat tcagaatacc ctatggaacc aatgtataaa 1680 tttgctctcc cgacaatgag aaaaataatg agaaattttt ccagccaagc aattttaatg 1740 tatcagaata gtgtgactgc tggaaaagct tttgtaataa aagcagctcg aaatgccggg 1800 tatacaagca ttgaaaataa gtggctgggt attgacttcc tagccgaagc acaattgtca 1860 caaagccaac tggatatcaa acatcaaata ttggctgcta atgttggtag aagtaaaact 1920 aagttgtttg ctttagctgc tcctagtgat gataataatg tggataaaga aaggcacact 1980 acgcgggatg ttagtgcaac caggcatagc tatgcaggtg ctgctattga ataaattaat 2040 ttaaaagtca aatttggtgg agttttaggt aacttgttat attctggttg tgaagccaag 2100 atatattcag gagccctttc tccatatcc 2129 //