ID GU370363; SV 1; linear; genomic RNA; STD; VRL; 3522 BP. XX AC GU370363; XX DT 28-SEP-2010 (Rel. 106, Created) DT 28-SEP-2010 (Rel. 106, Last updated, Version 1) XX DE Homalodisca vitripennis reovirus isolate Pauma1 segment 2, complete DE sequence. XX KW . XX OS Homalodisca vitripennis reovirus OC Viruses; Riboviria; Reoviridae; Sedoreovirinae; Phytoreovirus; OC unclassified Phytoreovirus. XX RN [1] RP 1-3522 RX DOI; 10.1016/j.virol.2010.08.002. RX PUBMED; 20739043. RA Stenger D.C., Sisterson M.S., French R.; RT "Population genetics of Homalodisca vitripennis reovirus validates timing RT and limited introduction to California of its invasive insect host, the RT glassy-winged sharpshooter"; RL Virology 407(1):53-59(2010). XX RN [2] RP 1-3522 RA Stenger D.C.; RT ; RL Submitted (30-DEC-2009) to the INSDC. RL USDA-ARS, 9611 S. Riverbend Ave., Parlier, CA 93648, USA XX DR MD5; 2159cf242585be891c5c3672214c3b90. XX CC GenBank Accession Numbers GU370362-GU370373 represent the complete CC genome of Homalodisca vitripennis reovirus Pauma1 isolate. XX FH Key Location/Qualifiers FH FT source 1..3522 FT /organism="Homalodisca vitripennis reovirus" FT /segment="2" FT /host="Homalodisca vitripennis" FT /isolate="Pauma1" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="2002" FT /db_xref="taxon:411854" FT CDS 14..3469 FT /codon_start=1 FT /product="RNA binding protein" FT /db_xref="InterPro:IPR008580" FT /db_xref="UniProtKB/TrEMBL:C1JAV9" FT /protein_id="ADN64805.1" FT /translation="MAYPTDVRNIADLYNVFRDAPNREGLITDIRNGLVRLKNVSKLLS FT ESEIRNAAAISNITSMLSSLALGMEKVSKSLATLSTTDINRAEVLSSYQSTILKIEAST FT LAVSRYIKNLSVSLSGFVIGGIYSVCPIPAFLDVEPVIPNAFQKKPNTFDDKHDVYVAL FT HCSASNLVSDLYKDSIVVYTYAGVTLFTAIYAAETDALTITTLGGIVFSYNLNLDTDQP FT NGDLFSPLVIYLVYSKNQNYAQVYAIDSTRIQKFIRYASDYTNRLTIEDVSISLGKVNG FT DVRSVEHSITQVPLLDVRFSSTPTGISNGSFICMMFNCGLIEMLKFITETETVELKYAY FT QKVVQDAYTKSDVMLASLLSMQSSISALQAATPQLTEDVLTFPSSVAQTCGSLLNLTNT FT FSTSSVINSDVKQWNIMEQDGAERKDLDGELPTTLSAVNLATSTFHDYVVNVQCTGATQ FT QRSMSMSISIPKMLDPSTVLSSSLYTDDSNTIIPYSYAKPPNYPATLTQNARYSVSPLA FT HVMNNDVMPIKNGAVECLKLNTNLNILLTMEIDISDASSSLGGSVHNDFTFMIKQAGGS FT PLTYSTAFKPVIFTNTDGTRKLKLISVVDLTTLMPADAIYYTLEVAPDAKYVTGADVKM FT EDTDRGTFTTYTQGNYSYTTTVAIWDVVDYIITRRGNVVYTPPKADYTNVDNKAALITN FT YKTPFNYFVICDERIYYNGKSLTFVLTAGQTLSYNYFTSPLQNPTVDTYDAGVARNASY FT LVKMAMQMSSVTQLLSSLTLRVEAMERVMQPSRAQQIAGIVSGVGGLISLAMPLLGAVV FT VTIGTLISIADPTKQGIDYQSVFNAFTAWCQFAIVARYKYGIMTLNDPKLDTLRFLPKS FT SIDNFREKPIKIELDGLDETILRGSSTDYIDTGVNIRYNDMQLFGDSKVTAWLNGAVAR FT TMDNTASFFERNVINTLRNKNLLPMHARVEVIQTEKVGDIYRQTILYAGINEGAFIEGD FT AYAFRSGGSNSYRFNDYVSGPGRFKAVLESTTEDGTFKAADWSKSGMTQKEIFTVAGEM FT YPSKTPTNQETQDLYEAIIRDFATTDDSFVLQHHNTMMLPGQLDALEKLLIDNAQNFSY FT AFVGNNCQNYAEDLVNIITNFKRPQGWVSEASFKQYIQSIYDDL" XX SQ Sequence 3522 BP; 1181 A; 619 C; 744 G; 978 T; 0 other; ggcgtttgcg acgatggcgt accctacaga cgttcggaat atagctgact tgtataatgt 60 atttcgtgac gctccaaatc gcgaaggttt aatcactgat atcaggaatg gattagtgcg 120 tcttaaaaat gtgtcaaaac tactaagtga aagtgaaatt agaaatgcgg cagccatctc 180 taacataaca agtatgttat catcattagc attaggaatg gaaaaagtgt caaagtcatt 240 agcaactctt tcaactacag atattaacag agcggaggtt ttatcctcat atcaatctac 300 aattctaaag attgaagcgt caacgttggc cgtttcacga tatatcaaaa atttgtcagt 360 atcactatct gggtttgtta ttggagggat ttattcagtt tgtccgattc cagcattcct 420 agatgtggaa ccagttatac cgaatgcgtt tcagaagaag ccaaatacat ttgatgacaa 480 gcatgatgtg tatgtggcgt tgcactgtag tgcatccaat ctagtttcag atttatataa 540 ggacagtatc gtagtataca cttacgctgg agtcactcta tttacggcga tatatgcagc 600 tgagactgat gcactgacta taaccacgct aggaggcatc gtattcagct ataatttgaa 660 tctggataca gaccagccta atggagattt gttttcgcca ttagtgatat acttggtata 720 tagtaaaaat caaaactatg cgcaagtata tgctattgat tcaacacgga tacaaaaatt 780 tataagatac gcatctgatt atacgaatag attgactatt gaagatgtat cgatatcatt 840 gggtaaagta aatggtgatg tgagatcagt tgagcattcg attactcagg tacctttact 900 tgatgtgagg ttctcatcaa caccaacggg tatatctaat gggtcgttca tatgcatgat 960 gttcaattgt ggattaatag aaatgctgaa atttataact gaaactgaaa cggttgagtt 1020 aaaatatgca tatcagaagg tagttcagga tgcatacaca aaatcagatg ttatgttagc 1080 tagcctgcta tcgatgcaga gttcaatatc tgcattacaa gcagctacac cacaattaac 1140 tgaggatgta ttaacatttc catctagtgt agcacaaaca tgtggttcat tattaaacct 1200 aaccaatact ttttccacat catcagtgat taatagtgat gtaaaacaat ggaacatcat 1260 ggagcaggac ggagctgaac gcaaagactt ggatggtgag ttaccaacta cactatcagc 1320 tgtgaattta gcaacgtcaa cgtttcacga ctacgttgta aatgtgcaat gtacaggtgc 1380 gacgcagcag cgaagtatgt cgatgagtat ttcaatacca aaaatgttgg atccttcaac 1440 cgtattatca agctcattgt atactgatga ttcgaatacg ataataccat acagttatgc 1500 taaaccacca aattatccgg cgacactcac gcaaaatgca cggtacagcg tgagcccttt 1560 agcacacgtg atgaataatg atgtaatgcc aattaaaaac ggcgccgtag aatgcctcaa 1620 attaaataca aacttgaaca ttttgttaac aatggaaatt gatatatcag atgcatcctc 1680 aagtttgggt ggaagtgttc ataatgactt cacatttatg ataaagcagg ctggagggtc 1740 acccttgacg tactcaacgg cctttaaacc ggtaatattt acaaatacag acggtactag 1800 aaagctgaag ttgatatcag ttgtagatct aacaacatta atgccagctg atgctatata 1860 ctatacacta gaagtcgcac ctgacgctaa gtatgtaact ggcgctgacg taaaaatgga 1920 ggatacggac agaggaacat ttaccactta tacacagggt aattactctt atactacaac 1980 ggtagcaata tgggacgtag tagactacat cataacacgg cgaggaaatg ttgtatacac 2040 tccaccaaaa gctgattata caaatgttga taataaagca gcattaatta caaattataa 2100 aactccattt aactatttcg tcatttgtga tgagcggata tattataatg gtaagtcgtt 2160 gacatttgta cttaccgcag gtcaaacgtt gtcttataat tacttcacca gtccactaca 2220 aaatccaacg gttgatacct atgatgcagg ggtagctcga aatgcgagtt atttagtgaa 2280 aatggcaatg caaatgtcat cagtaacaca gttactttcg agtttaacgt tgagagtaga 2340 ggcgatggag agagtgatgc aaccatcaag agcacagcaa atcgcaggaa ttgtaagtgg 2400 agtgggaggg ctgatatcat tagcaatgcc actgctagga gccgtagtgg tgacgatagg 2460 cacactgata tcaatagccg accctacaaa gcaaggaata gattatcaat ctgtatttaa 2520 tgcatttacg gcttggtgtc aatttgcaat agtagccagg tataaatatg gaatcatgac 2580 gcttaatgat ccgaaattag atactttaag gtttttgcca aaaagtagta tagacaattt 2640 tagagagaaa ccaataaaaa tagagctaga tggactagat gaaacgatct tgcgtggttc 2700 tagtacagat tatatagata caggcgtaaa tatacgatat aatgatatgc agctgtttgg 2760 agactcgaag gtcacggctt ggttaaatgg agcagtggct agaactatgg ataatacggc 2820 tagtttcttt gagcgcaatg tgattaacac acttcgtaac aagaacttgc tcccaatgca 2880 cgcacgcgta gaagtaatac aaactgaaaa agtaggtgat atatatagac aaacaatatt 2940 atatgccggg ataaatgaag gtgcatttat cgaaggtgat gcttatgcat tcagatcggg 3000 cggttcaaat agttatcgtt ttaacgacta cgtgagcggg ccggggagat ttaaagccgt 3060 cttagagtct acaactgagg atggtacttt caaagccgct gattggagta agtcaggaat 3120 gacgcagaag gaaatattca cagtagctgg agaaatgtat ccatcaaaaa ctccaacaaa 3180 tcaagagaca caagacctgt acgaagctat aatacgagat tttgcaacga cggacgattc 3240 atttgtgtta caacatcata acacaatgat gttgcccgga cagctagacg ctctagagaa 3300 attattaatt gataatgctc aaaacttttc atacgccttc gtcggtaata attgccaaaa 3360 ttacgcggag gatttagtga atataataac taacttcaaa cgccctcagg gctgggtaag 3420 tgaagctagt tttaagcaat atatacaatc aatatacgat gacctgtaga gtagggcaga 3480 tccgcagctt cactaacatg cgtgtatgtg gagtaaaatg at 3522 //