ID   GU127621; SV 1; linear; genomic RNA; STD; VRL; 1724 BP.
XX
AC   GU127621;
XX
DT   24-OCT-2011 (Rel. 110, Created)
DT   15-MAY-2014 (Rel. 120, Last updated, Version 5)
XX
DE   Sweet potato chlorotic stunt virus isolate RKI15 RNA-dependent RNA
DE   polymerase (RdRp) gene, partial cds; and ribonuclease III (RNaseIII), p7
DE   protein (p7), and p22 protein (p22) genes, complete cds.
XX
KW   .
XX
OS   Sweet potato chlorotic stunt virus
OC   Viruses; Riboviria; Closteroviridae; Crinivirus.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-1724
RX   PUBMED; 24278443.
RA   Tugume A.K., Amayo R., Weinheimer I., Mukasa S.B., Rubaihayo P.R.,
RA   Valkonen J.P.;
RT   "Genetic Variability and Evolutionary Implications of RNA Silencing
RT   Suppressor Genes in RNA1 of Sweet Potato Chlorotic Stunt Virus Isolates
RT   Infecting Sweetpotato and Related Wild Species";
RL   PLoS One 8(11):E81479-E81479(2013).
XX
RN   [2]
RP   1-1724
RA   Tugume A.K., Amayo R., Mukasa S.B., Valkonen J.P.T.;
RT   ;
RL   Submitted (23-OCT-2009) to the INSDC.
RL   Applied Biology, University of Helsinki, Latokartanonkaari 7, Helsinki
RL   FIN-00014, Finland
XX
DR   MD5; 157afdb41db3b93ffb62081b2b83e159.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1724
FT                   /organism="Sweet potato chlorotic stunt virus"
FT                   /host="Ipomoea batatas"
FT                   /isolate="RKI15"
FT                   /mol_type="genomic RNA"
FT                   /country="Uganda:Rakai"
FT                   /collection_date="01-Mar-2007"
FT                   /db_xref="taxon:81931"
FT   gene            <1..54
FT                   /gene="RdRp"
FT   CDS             <1..54
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="RNA replication"
FT                   /db_xref="GOA:M0QTH2"
FT                   /db_xref="UniProtKB/TrEMBL:M0QTH2"
FT                   /protein_id="ADQ42496.1"
FT                   /translation="NFSSFRKIFDEFFVVDI"
FT   gene            71..757
FT                   /gene="RNaseIII"
FT   CDS             71..757
FT                   /codon_start=1
FT                   /gene="RNaseIII"
FT                   /product="ribonuclease III"
FT                   /note="endonuclease; suppressor of RNA silencing"
FT                   /db_xref="GOA:G8A4L8"
FT                   /db_xref="InterPro:IPR036389"
FT                   /db_xref="UniProtKB/TrEMBL:G8A4L8"
FT                   /protein_id="ADQ42497.1"
FT                   /translation="MVPIYSDVSEESKLTVFGSRHRLDSIVHSICTSDDRDRYEILGDW
FT                   AVASYVTRMLTDLFKHNADAESLSLLRAHNISNVMFAKVMVESKLFEDFYLWLTPDQMQ
FT                   LCRKTFAGGRSLYEVNVKFLANYFERIVGWLVVHDCSESVEKFLDLFLKPHMSFYIKKP
FT                   ARSILEEWAMKNNKRLDIHTGEYNVNKVVYVLVDGQEVSRASDLISKKRAISKAVSFAV
FT                   EALNLS"
FT   gene            762..935
FT                   /gene="p7"
FT   CDS             762..935
FT                   /codon_start=1
FT                   /gene="p7"
FT                   /product="p7 protein"
FT                   /db_xref="GOA:M0QTH3"
FT                   /db_xref="UniProtKB/TrEMBL:M0QTH3"
FT                   /protein_id="ADQ42498.1"
FT                   /translation="MEYSAIFNECCKECVMSNPKKCRFDVALLWSGIGFFTFNIILLFV
FT                   YCLLSIRIRTSY"
FT   gene            1090..1665
FT                   /gene="p22"
FT   CDS             1090..1665
FT                   /codon_start=1
FT                   /gene="p22"
FT                   /product="p22 protein"
FT                   /note="suppressor of RNA silencing"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JJW6"
FT                   /protein_id="ADQ42499.1"
FT                   /translation="MSSGAIYSELNRFLKYLRELDFSNFCFSDFLFRFSSLKSLIDEYS
FT                   SHWLVNTNELVWYRTICEQRLHPHLFDANRLLTRINVSDLKHDLIMIRDHFSSIDDFLN
FT                   KYPAIPILVSFTKNISAFLEDNEWESVIHHTDSLNRLVFRESWSDGYGYVNHHRLSASS
FT                   HDFQHMKLCDIFRLSKDKLNSGVFTFLL"
XX
SQ   Sequence 1724 BP; 461 A; 260 C; 361 G; 642 T; 0 other;
     aatttttcgt cgtttcgtaa gattttcgac gagttctttg ttgttgatat ttgattttcc        60
     accgattatg atggttccga tttattccga cgtttccgag gaaagcaaac ttactgtctt       120
     cggaagtcgt catagattgg attctattgt acacagcatt tgtacttcag atgatagaga       180
     cagatatgag attttaggtg attgggctgt cgcatcgtat gtcacgcgta tgctgacaga       240
     tctcttcaaa cataatgctg atgctgaatc tctgtcgttg cttcgcgctc ataatatttc       300
     taatgttatg ttcgcaaaag tcatggtaga atcaaaactc ttcgaagatt tttatctttg       360
     gttgactccc gaccaaatgc agttgtgtag gaagactttc gccggtggga gaagtctgta       420
     tgaggtcaat gttaaattct tagccaacta ttttgagaga atcgttggtt ggttggttgt       480
     gcatgattgt tcagaaagtg ttgagaagtt tcttgatctt ttcttgaagc ctcatatgtc       540
     tttctacatt aagaaacctg cccgttctat tcttgaagaa tgggccatga agaataacaa       600
     gagacttgac attcatactg gtgagtataa tgtcaacaag gtagtttatg tcctagtcga       660
     cggacaagag gtcagtcggg ctagtgattt gattagtaag aagagagcaa tttcaaaagc       720
     ggtttctttc gctgttgaag ctctaaatct gagttgaatc catggagtac tctgctattt       780
     ttaatgaatg ttgtaaagaa tgtgtgatgt ctaaccccaa gaaatgtcgc tttgatgtgg       840
     cactactttg gtctggtatt ggattcttta cttttaatat tattttattg tttgtatatt       900
     gtcttttgag tattagaatt agaacgtctt attaattagt tatcgtagat aagtggaata       960
     gagtgaaaac tactgtaatt gattattgtg atgtgtcaca actcacaatt taattgattc      1020
     agtccaacct gcactagttt gtggcgaggg tggttgttcg tcgggtttta ttatctattt      1080
     ctttgaacga tgagttctgg agcaatttac tctgaactta atcgttttct taagtatctt      1140
     agggagttag attttagtaa tttttgtttt agtgattttt tgtttcgttt ttcttcccta      1200
     aaatcactaa tcgatgagta tagtagtcat tggttagtaa atacgaatga attagtctgg      1260
     tatagaacaa tctgtgagca acgattgcat cctcatcttt tcgatgcaaa caggttgtta      1320
     acacggataa atgtttcaga tttgaagcat gacttgataa tgattcgtga tcatttttcg      1380
     agtattgatg attttctaaa caagtatccg gctataccaa ttcttgtctc attcaccaaa      1440
     aatataagtg cgtttttaga agataatgag tgggaatccg ttattcatca tacggactca      1500
     ctcaatcgtc ttgttttccg agagtcgtgg tcagacggtt atggttacgt taaccaccat      1560
     cgtctttcag cgtcgtcgca tgattttcaa catatgaagt tatgtgatat ttttcgtttg      1620
     tcgaaggata agttgaacag tggtgtgttc actttccttc tttaatgttt tcttttagta      1680
     tattaataaa aatcgataaa gatattaggg tagatttgat taat                       1724
//