ID   GU127606; SV 1; linear; genomic RNA; STD; VRL; 958 BP.
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AC   GU127606;
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DT   24-OCT-2011 (Rel. 110, Created)
DT   15-MAY-2014 (Rel. 120, Last updated, Version 5)
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DE   Sweet potato chlorotic stunt virus isolate HOM40 RNA-dependent RNA
DE   polymerase (RdRp) gene, partial cds; and ribonuclease III (RNaseIII) and p7
DE   protein (p7) genes, complete cds.
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KW   .
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OS   Sweet potato chlorotic stunt virus
OC   Viruses; Riboviria; Closteroviridae; Crinivirus.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-958
RX   PUBMED; 24278443.
RA   Tugume A.K., Amayo R., Weinheimer I., Mukasa S.B., Rubaihayo P.R.,
RA   Valkonen J.P.;
RT   "Genetic Variability and Evolutionary Implications of RNA Silencing
RT   Suppressor Genes in RNA1 of Sweet Potato Chlorotic Stunt Virus Isolates
RT   Infecting Sweetpotato and Related Wild Species";
RL   PLoS One 8(11):E81479-E81479(2013).
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RN   [2]
RP   1-958
RA   Tugume A.K., Amayo R., Mukasa S.B., Valkonen J.P.T.;
RT   ;
RL   Submitted (23-OCT-2009) to the INSDC.
RL   Applied Biology, University of Helsinki, Latokartanonkaari 7, Helsinki
RL   FIN-00014, Finland
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DR   MD5; 5e7d6640a76c3655de44514821f676c5.
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FH   Key             Location/Qualifiers
FH
FT   source          1..958
FT                   /organism="Sweet potato chlorotic stunt virus"
FT                   /host="Ipomoea batatas"
FT                   /isolate="HOM40"
FT                   /mol_type="genomic RNA"
FT                   /country="Uganda:Hoima"
FT                   /collection_date="15-Apr-2007"
FT                   /db_xref="taxon:81931"
FT   gene            <1..54
FT                   /gene="RdRp"
FT   CDS             <1..54
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="RNA replication"
FT                   /db_xref="GOA:M0QTE4"
FT                   /db_xref="UniProtKB/TrEMBL:M0QTE4"
FT                   /protein_id="ADQ42437.1"
FT                   /translation="NFSSFRKIFDEFFVVDI"
FT   gene            71..757
FT                   /gene="RNaseIII"
FT   CDS             71..757
FT                   /codon_start=1
FT                   /gene="RNaseIII"
FT                   /product="ribonuclease III"
FT                   /note="endonuclease; suppressor of RNA silencing"
FT                   /db_xref="GOA:Q8JJW8"
FT                   /db_xref="InterPro:IPR036389"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JJW8"
FT                   /protein_id="ADQ42438.1"
FT                   /translation="MVPIYSDVSEESKLTVFGSRHRLDSIVHSICTSGDRDRYEILGDW
FT                   AVASYVTRMLTDLFKHNADAESLSLLRAHNISNVMFAKVMVESKLFEDFYLWLTPDQMQ
FT                   LCRKTFAGGRSLYEVNVKFLANYFERIVGWLVVHDCSESVEKFLDLFLKPHMSFHIKKP
FT                   ARSILEEWAMKNNKRLDIHTGEYNVNKVVYVLVDGQEVSRASDLISKKRAISKAVSFAV
FT                   EALNLS"
FT   gene            762..935
FT                   /gene="p7"
FT   CDS             762..935
FT                   /codon_start=1
FT                   /gene="p7"
FT                   /product="p7 protein"
FT                   /db_xref="GOA:M0QTE5"
FT                   /db_xref="UniProtKB/TrEMBL:M0QTE5"
FT                   /protein_id="ADQ42439.1"
FT                   /translation="MEYSAIFNECCKECVMFNPKKCRLDVALLWSGIGFFTFIIVLYFA
FT                   YFLLSIRIRRSY"
XX
SQ   Sequence 958 BP; 247 A; 149 C; 213 G; 349 T; 0 other;
     aatttttcgt cgtttcgtaa gattttcgac gagttctttg ttgttgatat ttgattttct        60
     accgattatg atggttccaa tttattccga cgtttccgag gaaagtaagc ttactgtctt       120
     cggaagtcgt catagattgg attccattgt acacagcatt tgtacttcag gtgatagaga       180
     cagatatgag attttaggtg attgggctgt cgcatcgtat gtcacgcgta tgctgacaga       240
     tctcttcaaa cataatgctg atgctgaatc tctgtcgttg cttcgcgctc ataatatttc       300
     taatgttatg ttcgcaaaag tcatggtaga atcaaaactc ttcgaagatt tttatctttg       360
     gttgactccc gaccaaatgc agttgtgtag gaagactttc gccggtggga gaagtctgta       420
     tgaggtcaat gttaaattct tagccaacta ttttgagaga atcgttggtt ggttggttgt       480
     gcatgattgt tcagaaagtg tcgagaagtt tcttgatctt ttcttgaagc ctcatatgtc       540
     tttccacatt aagaaacctg cccgttctat tcttgaagaa tgggccatga agaataacaa       600
     gagacttgac attcatactg gtgagtataa tgtcaacaag gtagtttatg tcctagtcga       660
     cggacaagag gtcagtcggg ctagtgattt gattagtaag aagagagcaa tttcaaaagc       720
     ggtttctttc gctgttgaag ctctaaatct gagttgaatc catggagtac tctgctattt       780
     ttaatgaatg ttgtaaagaa tgtgtgatgt ttaaccccaa gaaatgtcgc cttgatgtgg       840
     cactactttg gtctggtatt ggattcttta cttttattat tgttttatat tttgcgtatt       900
     tccttttgag tattagaatt agaaggtctt attaataatt agggtgtttt tgattaac         958
//