ID GQ924760; SV 1; circular; genomic DNA; STD; VRL; 2735 BP. XX AC GQ924760; XX DT 21-APR-2010 (Rel. 104, Created) DT 21-APR-2010 (Rel. 104, Last updated, Version 1) XX DE Jatropha curcas mosaic virus-[Dha] isolate Dharwad segment DNA-A, complete DE sequence. XX KW . XX OS Jatropha curcas mosaic virus-[Dha] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2735 RX DOI; 10.1007/s00705-010-0625-0. RX PUBMED; 20224893. RA Gao S., Qu J., Chua N.H., Ye J.; RT "A new strain of Indian cassava mosaic virus causes a mosaic disease in the RT biodiesel crop Jatropha curcas"; RL Arch. Virol. 155(4):607-612(2010). XX RN [2] RP 1-2735 RA Ye J., Gao S.-Q., Qu J., Chua N.-H.; RT ; RL Submitted (19-SEP-2009) to the INSDC. RL Host-pathogen Interaction, Temasek Life Sciences Laboratory, 1 Research RL Link National University of Singapore, Singapore 117604, Singapore XX DR MD5; 6cc0f85a56041948de6b117be592ab56. DR EuropePMC; PMC3163225; 21812981. DR EuropePMC; PMC4210599; 25352912. XX FH Key Location/Qualifiers FH FT source 1..2735 FT /organism="Jatropha curcas mosaic virus-[Dha]" FT /segment="DNA-A" FT /host="Jatropha curcas" FT /isolate="Dharwad" FT /mol_type="genomic DNA" FT /country="India" FT /collection_date="Aug-2008" FT /db_xref="taxon:749390" FT gene 135..491 FT /gene="AV2" FT CDS 135..491 FT /codon_start=1 FT /gene="AV2" FT /product="AV2" FT /db_xref="GOA:D5IBV5" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:D5IBV5" FT /protein_id="ADE43437.1" FT /translation="MWDPLVNEFPDSVHGFRCMLAVKYLQLVEGTYSPDTLGYDLIRDL FT ISVIRAKNYVEATSRYHHFNTRLEGTSPSELRQSIQQPCCCPHCPRHKKTSLDKQAHES FT EAQVVQDVQKPRCS" FT gene 295..1065 FT /gene="AV1" FT CDS 295..1065 FT /codon_start=1 FT /gene="AV1" FT /product="AV1" FT /note="coat protein" FT /db_xref="GOA:D5IBV6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:D5IBV6" FT /protein_id="ADE43438.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPFSNRVAVPTVRVTKRQAWI FT NRPMNRKPRWYRMFKSPDVPRGCEGPCKVQSFESRHDVLHIGKVMCISDVTRGIGLTHR FT VGKRFCVKSVYILGKVWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWSATVTGGQYASKEQALVRRFFRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(1062..1466) FT /gene="AC3" FT /note="Ren" FT CDS complement(1062..1466) FT /codon_start=1 FT /gene="AC3" FT /product="AC3" FT /note="replication enhancer" FT /db_xref="GOA:D5IBV7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D5IBV7" FT /protein_id="ADE43439.1" FT /translation="MDSRTGELITAAQAMSGVFIWEVTNPLYFKIIQHDNRPFGTTMDI FT ITIQIRFNHNLRKALGLHQCWMDFKVWTILQPQTWRFLRVFKTQVLKYLDRLGIISINT FT VVRAVEHVLYNVLDGTESVEQSNLIKFNVY" FT gene complement(1207..1614) FT /gene="AC2" FT /note="TrAP" FT CDS complement(1207..1614) FT /codon_start=1 FT /gene="AC2" FT /product="AC2" FT /note="transcription activator protein" FT /db_xref="GOA:D5IBV8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D5IBV8" FT /protein_id="ADE43440.1" FT /translation="MQPSSPSQNHYTQVPIKVKHRAAKRKAIRRKRVDLECGCSYYVHI FT NCHNHGFTHRGTHHCSSGDEWRLYLGGNKSPLFQDHSARQQTVRNDDGHNNHPDTVQPQ FT PEESVGTTSMLDGFQGLDDLTASDLAFLEGI" FT gene complement(1559..2602) FT /gene="AC1" FT /note="Rep" FT CDS complement(1559..2602) FT /codon_start=1 FT /gene="AC1" FT /product="AC1" FT /note="replication-associated protein" FT /db_xref="GOA:D5IBV9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D5IBV9" FT /protein_id="ADE43441.1" FT /translation="MSPPKRFQINAKNYFLTYPRCSLTKEEALSQIRALQTPTNAKFIK FT ICRELHENGEPHLHVLIQFEGKYKCQNKRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGTFQIDGRSARGGQQSANDAYAAALNSGSKSEALTILRELAPRDYLKDFH FT HISSNLDRIFTTPQPPYQNPFSLSSFDRVPEELDGWFHENVMDAAARPLRPKSIVIEGD FT SRTGKTMWARALGPHNYLCGHLDLNPKVYNNDAWYNVIDDVDPHYLKHLKEFMGAQKDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKAWALKNATFISLTEPL FT YSGANQG" FT gene complement(2143..2445) FT /gene="AC4" FT CDS complement(2143..2445) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D5IBW0" FT /protein_id="ADE43442.1" FT /translation="MGSLICTCSSNSKANTNARISDSSTWYPQPDQHISIRTFRELNPA FT PTSSPTSTRTAIPWNGEHSRSMEDLPEGVNNLQTTLTPQHLTAAVNQRLLRSLGS" XX SQ Sequence 2735 BP; 673 A; 589 C; 658 G; 815 T; 0 other; accggatggc cgcgctccct gctttgtggt ggaccccccc cacgtggaga tgtcccccac 60 tcagaacgct gcgtcaagct tgtataattg tggtccctct ttaagtactt gctcagcaag 120 ttggagtctg cacaatgtgg gaccctttgg taaacgagtt ccctgactct gtgcacggtt 180 tccggtgtat gcttgccgtg aaataccttc agctggtcga aggtacttat tctcctgata 240 cactcggtta cgatttaatc agggatttga tctctgtcat cagggcgaag aattatgtcg 300 aagcgaccag cagatatcat catttcaaca cccgcctcga aggtacgtcg ccgtctgaac 360 ttcgacagtc cattcagcaa ccgtgttgct gtccccactg tccgcgtcac aaaaagacaa 420 gcctggataa acaggcccat gaatcggaag cccaggtggt acaggatgtt caaaagccca 480 gatgttccta ggggatgtga aggcccatgt aaggtccagt cgtttgaatc tagacacgat 540 gtgctccata taggtaaggt gatgtgcata tctgatgtca ctcgtggtat tgggcttact 600 catcgcgtgg gcaagaggtt ttgtgttaag tccgtttaca tcctgggcaa ggtatggatg 660 gatgaaaata tcaagaccaa gaatcacact aatagcgtga tgttcttcct cgttagggat 720 cgtaggcctg ttgataagcc ccaggatttc ggtgaggtgt ttaacatgtt tgataatgaa 780 cctagtacag ctactgtgaa gaacatgcat cgtgatcgct atcaagtcct caggaagtgg 840 agtgccactg tcactggtgg tcagtatgcg agcaaggaac aggctttagt taggcgtttc 900 tttagagtta ataattatgt tgtctataat cagcaagagg ctggcaagta tgaaaaccat 960 actgagaatg cattgatgct gtatatggcg tgtactcacg cctctaatcc tgtatacgct 1020 acgctgaaaa ttagaatcta tttttatgat tcggtcagca attaataaac attaaatttt 1080 attaaattag actgctcaac actctcagtc ccatcgagta cattgtacaa tacatgctct 1140 acggctctta caactgtatt aatacttata atccctaatc tatcgaggta ttttaatact 1200 tgggtcttaa ataccctcaa gaaacgccag gtctgaggct gtaagatcgt ccagaccttg 1260 aaatccatcc agcattgatg tagtcccaac gctttcctca ggttgtggtt gaaccgtatc 1320 tggatggtta ttatgtccat cgtcgttccg aacggtctgt tgtcgtgctg aatgatcttg 1380 aaatagaggg gatttgttac ctcccagata aagacgccac tcatcgcctg agctgcagtg 1440 atgagttccc ctgtgcgtga atccatggtt gtggcagttg atgtgtacgt agtatgagca 1500 gccacattct aaatcaaccc tcttacgccg aatggcttta cgcttagcag ctctgtgttt 1560 aaccttgatt ggcacctgag tatagtggtt ctgtgaggga gatgaaggtt gcatttttga 1620 gtgcccaagc ttttaatgcg ctattctttt cctcatctag gaactcttta tagctggaat 1680 tgggccctgg attgcagagg aagatagtgg gaatacctcc tttaatttga actggcttgc 1740 cgtacttggt gtttgattgc cagtccttct gggcccccat aaattccttt aagtgcttta 1800 ggtaatgggg atctacgtca tcaatgacgt tgtaccatgc atcattgttg tagaccttgg 1860 gatttaagtc tagatgtcca cataggtaat tatgtggacc caatgcacga gcccacatag 1920 tcttacctgt ccgactatcg ccctcgatta cgattgactt cggtctcaaa ggccgcgcag 1980 cggcatccat cacgttttca tgaaaccacc cgtcgagttc ttctggaact cggtcaaatg 2040 aagagaggga gaaagggttc tgatacggag gttgtggtgt tgtaaaaatc cgatccaggt 2100 ttgagcttat gtgatggaag tctttgagat aatctctagg tgctaactcc ctaaggatcg 2160 taagagcctc tgatttactg ccgctgttaa gtgctgcggc gtaagcgtcg tttgcagatt 2220 gttgaccccc tctggcagat cttccatcga tctggaatgt tccccattcc aaggtatcgc 2280 cgtccttgtc gatgtaggac ttgacgtcgg agctggattt agctccctga atgttcggat 2340 ggaaatgtgc tgatctggtt ggggatacca ggtcgaagaa tcgcttattc tggcatttgt 2400 atttgccttc gaattggatg agcacgtgca gatgaggctc cccattctcg tggagctctc 2460 tgcagatctt gatgaattta gcgtttgtag gtgtttgaag cgctctaatt tgggaaagtg 2520 cctcttcttt agttagagag cacctaggat aagtgaggaa atagttttta gcgtttattt 2580 gaaagcgctt aggaggtgac attctctctc ctcaatcggt actcaaacat ttagccccta 2640 tattaggtac tcaatatata catgagtacc atatggcata tgtgtaaata atgggaatat 2700 aatttgaatt tgaaagcggc catccgtata atatt 2735 //