ID GQ415392; SV 1; circular; genomic DNA; STD; VRL; 2726 BP. XX AC GQ415392; XX DT 23-DEC-2009 (Rel. 103, Created) DT 23-DEC-2009 (Rel. 103, Last updated, Version 1) XX DE Panicum streak virus isolate F_KE_Nye2_g364, complete genome. XX KW . XX OS Panicum streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RC Publication Status: Online-Only RP 1-2726 RX PUBMED; 19903330. RA Varsani A., Monjane A.L., Donaldson L., Oluwafemi S., Zinga I., Komba E.K., RA Plakoutene D., Mandakombo N., Mboukoulida J., Semballa S., Briddon R.W., RA Markham P.G., Lett J.M., Lefeuvre P., Rybicki E.P., Martin D.P.; RT "Comparative analysis of Panicum streak virus and Maize streak virus RT diversity, recombination patterns and phylogeography"; RL Virol J 6:194-194(2009). XX RN [2] RP 1-2726 RA Varsani A., Monjane A.L., Donaldson L., Oluwafemi S., Zinga I., Komba E.K., RA Plakoutene D., Mandakombo N., Mboukoulida J., Semballa S., Briddon R.W., RA Markham P.G., Lett J.-M., Lefeuvre P., Rybicki E.P., Shepherd D.N., RA Martin D.P.; RT ; RL Submitted (25-JUL-2009) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Rondebosch, Cape Town, RL WP 7701, South Africa XX DR MD5; 540cbdf7293926c8dfe11b4ce847ed1a. DR EuropePMC; PMC2777162; 19903330. XX FH Key Location/Qualifiers FH FT source 1..2726 FT /organism="Panicum streak virus" FT /host="Panicum maximum" FT /isolate="F_KE_Nye2_g364" FT /mol_type="genomic DNA" FT /country="Kenya" FT /lat_lon="0.42 S 36.95 E" FT /collection_date="2008" FT /db_xref="taxon:10826" FT CDS 152..478 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:D2IW20" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:D2IW20" FT /protein_id="ADA67956.1" FT /translation="MDASSQYSALPYPQPPRVPSAAPSAGGLPWSRVGEIVIFTFVSVL FT ALYLLWLWVLKDCILLLKAQRGRSTEELIFGPGERPAVAAADGSRPVPDPSPSCPPGPR FT PFTV" FT CDS 489..1235 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:D2IW21" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:D2IW21" FT /protein_id="ADA67955.1" FT /translation="MSGAMKRKRSDEVAWSRRRPVKKPARRPPPPRAGPSVRRGLPALQ FT IQTLVAAGDTMITVPSGGICSLIGTYARGSGEGERHTNETLTYKVALDYHFVASSAACK FT YSSIGVGVCWLVYDAQPTGTAPTVQDIFPHPATLSAFPYTWKVGREVCHRFVVKRRWCF FT TMETNGRIGSDTPPSNVAWPPCKKDIYFHKFCTGLGVKTEWKNVTDGKDGAIKKGGLYI FT VIAPGNGLEFTVHGQCRLYFKSVGNQ" FT CDS complement(1624..2589) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:D2IW22" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D2IW22" FT /protein_id="ADA67954.1" FT /translation="MSTEGSTSLTVTPTGRHTVRSFRHRNVNTFLTYSKCPLEPEFIGE FT HLFRLTKDYEPAYILVVRETHIDGTWHCHALLQCIKPVTTRDERYFDIDRYHPNIQSAK FT STDKVREYILKDPKDKWEKGTYIPRKKSFVPPGKENSEKKPSKDEIMREIMTHATSKEE FT YLSLVQTSLPYDWATKLSYFEYSASRLFPDIAESYTNPHPATELDLHCNETIRDWLEPN FT IYQVSPKAYMLLEPSCLSLEQAKADLDWLSETTRMLQEQENAASTSSAQHGQVRQLGPE FT ASDDTTTGRIMSTGLHMMKKLSTMSLTTFPSSSARAGSSS" XX SQ Sequence 2726 BP; 549 A; 713 C; 736 G; 728 T; 0 other; taatattacc gctcacaccc catgcgagcc gcggccctgt gcggcgagcg gtccccggat 60 gttctacccc cggtgcgatt tctttagctg cgtgttcttt agcagctgcc tgccctgtcc 120 tataagatgc tctgccagtg cgatccgcat catggatgct agcagccagt actctgcttt 180 gccctatcct cagcccccgc gggtaccctc tgcagctccg tccgccggag gcctgccgtg 240 gagtcgcgtc ggtgagatag tcatctttac ctttgtttca gtgctagctc tttacctgct 300 ttggctttgg gtgctcaaag attgtatctt acttctgaag gctcagcgag gtagatccac 360 ggaggagctg atatttggtc ctggtgagag gccagccgtc gctgctgccg acggttctcg 420 tcctgttcca gatccgtcgc cgtcctgtcc accgggacct agacctttca cggtctagag 480 cactcagcat gtctggagct atgaagcgta agcgttcgga tgaggttgcc tggagtcgaa 540 ggaggcccgt gaagaagcct gcccggcgcc ctcccccgcc ccgggctggc ccctctgtca 600 ggagaggact ccctgccctt cagattcaga ccttggtggc tgccggtgac actatgatca 660 ctgtgccgtc aggaggcatc tgcagtctga ttggcacgta tgcccggggt tctggtgaag 720 gagaacgtca caccaacgag actctgacgt acaaggttgc tctggactac cacttcgttg 780 cctcttctgc tgcgtgtaaa tacagcagta ttggtgttgg agtttgctgg ttggtgtacg 840 atgcgcagcc taccggcact gccccgaccg tccaagacat atttccgcac ccggctaccc 900 tctcagcctt tccctacacc tggaaggtgg ggagggaggt ctgccatcgc ttcgttgtta 960 aacggcgctg gtgcttcacc atggagacta acggccggat cggttcagat actcccccgt 1020 ccaacgtggc ttggccaccc tgcaagaagg acatttactt ccacaagttc tgcacgggct 1080 tgggcgtgaa gacggagtgg aagaacgtca cagacgggaa ggacggcgcc atcaagaagg 1140 gcggcttgta catagtcatt gcgcctggga acgggctcga gtttacggtt cacggccagt 1200 gccgtctgta ctttaagtca gttgggaatc agtgattccc actttaattt aataaaacaa 1260 gttttattca tacagaacgg agttcataca ttacatagtc ggcattaagc cgacgaaaaa 1320 cacacacata gtgcagcctc gggctaaaga ccgagtctca aacgacccaa cttaaaaaca 1380 aatcaaaaca agcatgatat tattaaaact gcagccgctg ccttcattct gtctggaaga 1440 acttctctcc agacagcagt gtgtactggt cgcagttagc ctcaaagtag ctcagctgcg 1500 ctggagtcat gtccttcagc cagtcctcat cttcgttggc gaggatgatt gtaggaatgc 1560 ttttcttggc taccttccgt ctcttgccgt atttgggatt gactatgtag tcagtttgac 1620 agcctacgag ctgcttccag cacgggcaga acttgaaggg aatgtcgtca acgacattgt 1680 actgagcttc ttcatcatat gaagaccagt cgacattatt ctgccagtag ttgtgtcgtc 1740 cgaggcttct ggcccaagtt gtcttacctg tccgtgttgg gccgacgatg tagaggctgc 1800 gttttcttgt tcctggagca ttctggttgt ttcagacaac caatctaagt cagcttttgc 1860 ttgttctagg cttaagcagc ttggttctag gagcatgtaa gctttgggac tgacctggta 1920 tatgtttggc tccagccagt cccggattgt ctcattgcag tggaggtcta gctcagttgc 1980 aggatgagga ttggtgtagg actctgcgat gtctgggaag aggcgactag ctgagtactc 2040 aaagtaagac agttttgttg cccagtcgta aggcagtgaa gtctgcacta gagaaaggta 2100 ctcttccttg ctagtagcat gtgtcatgat ctctctcatg atttcatcct tgctaggctt 2160 cttctcagag ttttccttac ctggagggac gaaggacttc ttccttggta tgtatgtacc 2220 tttctcccac ttgtccttgg ggtccttcag tatgtactca cgcaccttgt cagtgctctt 2280 ggcgctctgt atgttgggat ggtaccgatc tatgtcaaag tacctctcgt cacgagtagt 2340 gacaggcttg atgcactgga gaagagcatg gcagtgccat gttccgtcta tgtgtgtctc 2400 tctgactact agtatgtagg ctggctcata gtccttagtg agcctgaaga gatgctcacc 2460 gatgaactct ggttctagag gacatttgct gtatgtgagg aaggtgttaa cattccggtg 2520 cctaaagctc cggactgtgt gcctgcctgt gggggtcaca gtgagggagg ttgatccttc 2580 ggtcgacatt agcgctagag gtgggcaatc tcaggctcct cctcaactct acccctagac 2640 agctgcgaaa taatccgccc accccccgtc cgcttttata gttgcttggt gggctgggcc 2700 ggccggccca tggggtgtga gcagca 2726 //