ID GQ369530; SV 1; linear; genomic RNA; STD; VRL; 3812 BP. XX AC GQ369530; XX DT 01-AUG-2012 (Rel. 113, Created) DT 01-AUG-2012 (Rel. 113, Last updated, Version 1) XX DE Arabis mosaic virus isolate ba segment RNA2-V, complete sequence. XX KW . XX OS Arabis mosaic virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-3812 RA Marmonier A., Vigne E., Komar V., Demangeat G., Besse S., Gugerli P., RA Lemaire O.; RT "Comparisons of genomic and pathological features among barley and RT grapevine infecting-isolates of Arabis mosaic virus"; RL Unpublished. XX RN [2] RP 1-3812 RA Marmonier A., Vigne E., Lemaire O.; RT ; RL Submitted (09-JUL-2009) to the INSDC. RL UMR 1131, INRA, 28 rue de Herrlisheim, Colmar, 68 68000, France XX DR MD5; 0dcb0931af820f0b51a9807fe78c5d66. XX CC GenBank Accession Numbers GQ369526-GQ369530 represent sequences CC from the 5 segments of Arabis mosaic virus isolate ba. XX FH Key Location/Qualifiers FH FT source 1..3812 FT /organism="Arabis mosaic virus" FT /segment="RNA2-V" FT /host="winter barley cultivar Express" FT /isolate="ba" FT /mol_type="genomic RNA" FT /country="Switzerland" FT /collection_date="1991" FT /note="identical sequence found in winter barley cultivar FT Mannitou" FT /db_xref="taxon:12271" FT CDS 261..3617 FT /codon_start=1 FT /product="polyprotein P2-V" FT /db_xref="GOA:I6LL59" FT /db_xref="InterPro:IPR005054" FT /db_xref="InterPro:IPR005305" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR021081" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:I6LL59" FT /protein_id="ADJ39333.1" FT /translation="MGKFYYSNRRLACYAQATNRHLGGSFEQWLQCMEDSAFRAEVKAR FT VQSEREEVRVKRLFSYPVGRGPAEDPRGVNWAYICLGTTAHWAGVPGDMIAPVEPVEVP FT KVVVPPVKVIPSPPPMPRPYFRSIGAFAPTRSGFIRATVERLTREREESRAAALFAELP FT LEYPQGAPLVVPRGFAAMRWNYHATWRRWYDTSDERALRVHPGGPALPPPPPPPPIQKP FT PSFEERLQAALQRQSCARAFALETSLGLNMAWVGTATVPGISVCCADGRTTGGQTIAQE FT ADPINHRVASNTAPGRAQWISERRSALRRKEQANSLQGLAAQTDMTFEQARNAYLGAAD FT MIEQGLPLLPPLRNAYAPRGLWRGPSTRANYTLDFRLNGIPTGQNTLEILYNPVADEEM FT DDYRDRGMSAVVIDALEIAINPFGMPGNPTDLTVVATYGHERNMERAFIGSSSTFLGNG FT LARAIFFPGLQYSQEEPRRESLIRLYVASTNATVDADSILAAISVGTLRQHIGSLHNRT FT VASSVHAAQVQGTTLRATMMGNAVVVSPEGSLVTGTPEANVQIGGGSSMRMVGPLAWEN FT VEEPGQTFTIRNRSRSMRVDRNADVGIALPRMSTTTRGLAGRGSVQVPKDCQAGKYLKT FT LDLRDMVSGFSGIQYEKWITAGLVMPDFKVVVRYPANAFTGITWVMSFDAYNRITSSIS FT TTASPAYTLSVPHWLLHHKNGTTSCDIDYGELCGHAMWFNATTFESPKLHFTCLTGNNK FT ELAADWEFVVELYAEFEAAKTFLGRPNFIYSADAFNGSFKFLTIPPLEYDLSTTSAYKS FT VSLLLGQTLVDGTHKVYNYNNTLLSYYLGIGGVVKGKVHICSPCTYGIVLRVVSEWNGV FT TNNWNQLFKYPGCYIDEDGRFEIEIRSPYHRTPLRLLDGQAASSFTSTLNFYAISGPIA FT PSGETAKMPVVVQIEEVALPDLSVPTFPNDYFLWVDFSAFTVDTEEYVIGSRFFDISST FT TSTVALGDNPFAHMIACHGLHHGILDLKLMWDLEGEFGKSSGGVTITKLCGDKATGMDG FT ASRVCALQTMGCETELYIGNFAGANPNTALSLYSRWLAIKLDKAKSMKMLRVLCKPRGN FT FEFYGRTCFKV" XX SQ Sequence 3812 BP; 910 A; 821 C; 955 G; 1126 T; 0 other; atgaaaaatt ttgtggagtt ttcatataaa cgcaatccac aaccctttca accaagagtt 60 taagaaactc aaaattgttc acagccaatc cgttaagagc ggaataaaag tcaaaccgtt 120 aagagcggta ccaaagcgaa gagtttaaga aactcatcat tgccttcttt ttctttctta 180 cttacgtgct ttatttattt agcgtttgtg tagtctgctt ttttggagga gcgttttgtt 240 tcgttttctt ttctgccctt atgggcaagt tttactacag taacaggcgt ctagcctgtt 300 acgcacaagc tacgaaccgt catctgggcg gttctttcga acaatggctc caatgtatgg 360 aggactcagc ctttagggct gaggttaaag cccgtgtcca atcagagcgg gaggaagtcc 420 gtgtcaagcg gcttttttcc tatccagttg gtcgtgggcc agctgaagac ccccgtgggg 480 tcaactgggc atacatatgt ctggggacta ctgcccattg ggctggagtt cccggggaca 540 tgatagcccc agttgaacct gtggaggttc cgaaggtggt ggtgccacct gtgaaggtta 600 ttccttcacc gccccccatg ccaaggcctt actttaggtc aattggggcg ttcgcaccaa 660 ccaggtccgg gtttatacgg gccactgtgg aaagacttac ccgggaacgg gaagagtcaa 720 gagctgcggc actctttgcc gaattgccgt tggagtaccc acaaggtgct cccttggtgg 780 tccctcgtgg cttcgcggcc atgaggtgga actatcatgc cacctggagg cggtggtatg 840 acactagtga tgagcgcgct ttgcgtgttc atcctggtgg tcctgctttg cctccaccac 900 cccccccccc cccaatccaa aaaccaccct cttttgagga gaggttgcag gctgctcttc 960 aaaggcagtc ctgtgctagg gctttcgccc tggaaacctc gctgggcctt aatatggcct 1020 gggtgggaac ggctaccgtc cctggcattt ctgtatgctg tgcagatggt aggactaccg 1080 gagggcaaac cattgcccaa gaagctgacc ctattaatca tagggtcgcc tcaaacacag 1140 cccccggtag ggcacaatgg atctcggagc gccgcagtgc tttgagaaga aaagaacagg 1200 ctaatagcct gcagggtctt gctgctcaaa ctgatatgac atttgagcag gccaggaatg 1260 cgtatcttgg tgctgctgat atgatagagc aaggcctacc gttgttgcct ccactgagaa 1320 atgcttatgc acctcgtggt ctatggaggg gaccttccac cagagccaat tacactttgg 1380 atttcaggct caatggaatt cccacgggac aaaatacttt agaaatattg tataatcccg 1440 tggcggacga ggaaatggat gactaccgtg acaggggtat gtcagcagtc gtgattgatg 1500 cgctggaaat tgctattaat ccttttggaa tgccaggcaa tccgactgat cttactgttg 1560 tagcaacata tgggcatgag cgtaatatgg agcgtgcctt tattggctct tcgtcgacct 1620 ttcttggaaa tggtctggcg agagctattt tcttccctgg cttgcaatat agtcaggagg 1680 aacccaggcg cgaatcactt attcgcctgt atgttgcttc taccaatgcc actgttgatg 1740 ctgattctat attggcagcc attagtgtgg gcactctgcg ccaacacatt ggttcgctac 1800 ataatagaac agtggcaagt tctgtgcatg ctgctcaggt gcagggcact actttgaggg 1860 ctactatgat gggtaatgcc gttgtagtct cccctgaagg aagtcttgtt accggaaccc 1920 ctgaagccaa tgtccaaatt ggaggaggtt ctagtatgcg aatggttggt cccctggcat 1980 gggaaaatgt tgaagagcca ggtcagacct ttactataag aaaccgctcc cggtctatgc 2040 gagtagatcg gaatgctgat gttggaattg ctcttcctcg gatgagtact acaacgcggg 2100 gtcttgctgg tagaggttct gttcaggtgc ctaaagattg ccaggcaggg aaatacttga 2160 aaacccttga tttaagagat atggttagtg ggttttctgg tattcagtat gaaaagtgga 2220 tcactgctgg acttgttatg ccagatttta aagtagtggt tcgctatccg gccaatgcct 2280 ttacaggtat tacgtgggtt atgagctttg atgcctataa tcggattact agcagtattt 2340 ctactactgc tagtcctgcg tatactctgt ctgtccctca ttggcttttg catcataaaa 2400 acgggaccac ctcatgtgat attgactatg gggagctctg tggccatgct atgtggttta 2460 atgccactac atttgagagc cccaaactcc atttcacatg cctcactggg aataacaaag 2520 aacttgctgc agattgggag tttgtagtgg agttatatgc tgagtttgag gcagcaaaaa 2580 cttttcttgg gaggcccaac tttatttata gcgctgatgc ttttaatggg tctttcaagt 2640 ttttgacaat tcccccgctg gaatatgacc taagtactac cagtgcctat aagagcgtat 2700 cccttctttt gggtcaaact cttgttgatg gaactcataa ggtgtataat tacaataata 2760 cacttttgag ttactatctt ggtattggtg gtgtggtcaa gggcaaagtg catatatgta 2820 gcccttgcac ttatggcata gtcctgagag ttgttagtga atggaacggg gtcactaaca 2880 actggaatca actgtttaaa taccccgggt gttacatcga tgaggatggg cgatttgaaa 2940 ttgaaatacg ttccccatat catcgaactc cactgcgctt acttgatgga caggcggcga 3000 gctcatttac gagtacgctg aatttttatg ccatctctgg gccaatagcc ccaagtggag 3060 aaactgctaa gatgccagtg gtcgtgcaga ttgaagaagt tgcacttcct gatctttcag 3120 ttccaacctt ccctaatgat tatttcctat gggttgattt ttcagcgttc actgtggata 3180 ctgaagaata tgtaataggg tcgaggtttt ttgatatttc ctcaactact agtactgtag 3240 ccctcggaga taatcctttt gcccacatga tagcttgtca tggactccat catggaatcc 3300 ttgatcttaa gttaatgtgg gatttggaag gtgagtttgg aaagagttct ggtggtgtta 3360 ctatcacaaa actttgtggt gataaggcta ctggcatgga tggtgcttct cgtgtgtgtg 3420 ctttgcaaac catggggtgc gaaactgaac tgtacattgg gaattttgct ggcgcaaacc 3480 ccaatacggc gctttccttg tacagtcgtt ggcttgccat taaattagac aaagcaaaga 3540 gtatgaaaat gctcagagtt ttgtgcaagc ccagaggaaa ctttgaattc tacggaagaa 3600 cgtgcttcaa agtttagttt cctcatgata gtcttgggaa tctgacttta aaagacccat 3660 ttgtgttata tttatattta gcttgtttac tgcttttgtg tgtttaattt catgcttata 3720 gtggcgacag tgtgttgttt gtcctttgga cacacttgcc ttgttggacg caaaaagatt 3780 ttattttctt tttactgctt ttgtaaattt at 3812 //