ID GQ369526; SV 1; linear; genomic RNA; STD; VRL; 7384 BP. XX AC GQ369526; XX DT 01-AUG-2012 (Rel. 113, Created) DT 01-AUG-2012 (Rel. 113, Last updated, Version 1) XX DE Arabis mosaic virus isolate ba segment RNA1-I, complete sequence. XX KW . XX OS Arabis mosaic virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-7384 RA Marmonier A., Vigne E., Komar V., Demangeat G., Besse S., Gugerli P., RA Lemaire O.; RT "Comparisons of genomic and pathological features among barley and RT grapevine infecting-isolates of Arabis mosaic virus"; RL Unpublished. XX RN [2] RP 1-7384 RA Marmonier A., Vigne E., Lemaire O.; RT ; RL Submitted (09-JUL-2009) to the INSDC. RL UMR 1131, INRA, 28 rue de Herrlisheim, Colmar, 68 68000, France XX DR MD5; 628fc35d02800d431a516af1b1eacce2. XX CC GenBank Accession Numbers GQ369526-GQ369530 represent sequences CC from the 5 segments of Arabis mosaic virus isolate ba. XX FH Key Location/Qualifiers FH FT source 1..7384 FT /organism="Arabis mosaic virus" FT /segment="RNA1-I" FT /host="winter barley cultivar Express" FT /isolate="ba" FT /mol_type="genomic RNA" FT /country="Switzerland" FT /collection_date="1991" FT /note="identical sequence found in winter barley cultivar FT Mannitou" FT /db_xref="taxon:12271" FT CDS 229..7086 FT /codon_start=1 FT /product="polyprotein P1-I" FT /db_xref="GOA:I6LL55" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:I6LL55" FT /protein_id="ADJ39329.1" FT /translation="MWQISEGSQCCCTGKSWSNAEAKEARYVCDCLYNCRLVKVEVAPQ FT PPKSRIAPAQQKKERIAPLQNSNGRMAPTTPKFKRASVPDAPLVKQRCDVVVRVGPPAN FT LELVYPALVQEEVATPPTEKVLQPTTKADVRVPVCCAPKWMVAIPKPPVKTAPRVEQTQ FT FPKGAVCYNGTNFLDAAGKVVLSEGAKRILKGIRVAKQQRQRAARRSAACKKVRKARAL FT ALYKRLSEERTFQELPGGFAGEIPAGFFSYGKTVASPIATPKKVVTKRKRVSKPSTIAV FT PVQDFSCIDAFDWGEKSFPNEEAIEDDWVLVEKPVLKRQAAHSVQGRATEALTRFAASS FT GFTTKAHQKVEELASSGEAGHLLAGEFAELCLRSLVYNDAPILSASIEVLACEQDFKDA FT IELFNIELAEIPTDSTTCGRFNEWASSVKTMAKGVGSLVGDFARGAGTLTLITFDKAIE FT YLQEKALTLCQKVFNATMVPYLSHLAEASDIIKKIWKKLSEWMESLKGKAGLALEVLAH FT HAIFALGAIVVGGVVVLVEKVLVACKVIPTCGIVLGAFLTLFFASLGLTALECTADEIF FT KMHQCCKGAIYSMYSVKEPVCEGEGDSTTKGVLQGLDNAISALTRVGQSMISFKLGSFS FT YYAKIAQGFDQLARGKRAIGELTSWLIDLVGSVYSKVSGQESTFFDELSTIVCLDVRSW FT LLKSKRVRLQVETMAIGDRITLDTISKLLEEGHKILVTAAGVPRKTSADFTMCIKEEVS FT KLEEVHQRTACAGINEGMRQFPFWVYIFGASQSGKTTIANSVIIPSLLEEMNLPKTSVY FT SRPKTGGFWSGYARQACVKVDDFYAIEQTPSLASSMIDVVNSEPYPLDMAYLHEKGMSM FT DSPLVVTTANTVKPPTNAGITDEASFFNRRAAVIEVRRKDNTHFTPRAYDNCIEVRFLH FT NKCAYVDSGGVPQGPAVNTPMEEGWVSPSEAVATLKNLLGEHVLAEEEKLLDYRERIGN FT DHPIYNAAQEFIGNMHYPGQWLTTEQKNTYGINEEGFSFLAVDGKMYKYNVLGKLNPCE FT TTPPHPNVIPWLEEKTLTVVHWDVHKHIATGPRNALVSCFLQGLVQDQSRVQSVELMGK FT DSSPEQQAFFKRLSLSERIYLRLCQIRIDAVKKEQLGGPSRGTLDVLRDCMAKSKAKLC FT ENYSLLLTLVAVLVLIATAYSLISTLVGLAGCTSFAGGIVAMKQVSNASIPCSEPRLEE FT RYSARNRFVSRISRARGDGPAKGQGEHEELVTELYYYFDGVKRLISCCWFKGRSLLMTR FT HQALAIPIGNEVQVIYADGTDRKLVWPGKQEDGSCKGYIEFPENELVVFEHARLLTMPV FT KYEKYFVDDPDRQISPNVAVKCCVARLEEGLPQFHFWNKYASARSDVHTVVDEGGSAVY FT QNKIRRHIIYAHEAKRNDCGAIAVAEIQRVPKVIAMLVSGAGNVSYSSVIPNYSSSFVR FT GDVPYVPEDGIKTNGYRKVGYLMRKDAPHVPSKTAFMKVPDEICFPYPNPKQPAILSAE FT DERLKGTVHEGYTPIRDGMKKFAEPMHLLDEKLLDEVAGDMVHTWFDVGEFLEDVPLNI FT AINGDVDEEYFDPMAMDTSEGYPEVLQRKAGEKGKARFFVGEPGAREFVPGCGPERAYL FT SLEEECKTRVPSLISIETPKDERLKRSKIETPGTRLFSVLPLAYNLLLRVKFLSFSRLL FT MKKRSHLPCQVGINPYSREWTDLYHRLAEMSDVGYNCDYKGFDGLITEQILAVVATMIN FT AGYQNPVANQQRSNLLLAISGRLSICGNQVYETEAGIPSGCALTVVINSIFNELLMRYC FT FKKIVPPVYRECFDRCVVLITYGDDNVFTVSQSIMESFTGDALKAEMANLGVTITDGKD FT KSLATIPARPLLELEFLKRGFKRGNGGMIYAPLEKLSIMSSLVYIRSDGSDMLQKLVDN FT VNSALVELFLHQDREYSESVRNFYLEKLPPGSYKELTTWYQAQTFHECQLSGESNWKPQ FT GLIEISHGAGFASFVQQDGTELERHDICPGLAISGARYIAKKEEILMSLSSLLPGDVNA FT TKLELKCGDGIGRLPSKASVLAQRKPGIVMRLCKQALDEKKTLVIRDERPYIGGWAMAC FT ICGESFGFSIRDTLALYANLLGPERKNGLAGYFSNFESPVHVKKVHAITNGEEGAAMLK FT EVFTFCEPKIYAATSCDTRREMLTHPPESFPNIVLIGGVSFPKEGGEPGALYSHTDITM FT SKKTKGVYVSEAILKCCLRCPGVSTKTVLQTSTVGSNLSKAHLKSLRQLQTHQCVRR" XX SQ Sequence 7384 BP; 1979 A; 1472 C; 1850 G; 2083 T; 0 other; atgaaaaatt tttgtgagtt ctatattaaa ggcgatcccc tttaatctca taagcaagag 60 tttaagaaac tcaaattttc atagtcaatc cgttaagagc ggaaacaaag ccaaaccgtt 120 aagagcggta ctaaaagaag agtttaagaa actcattgct ttatttttca tttcatttac 180 gctgtatttg tttagttttt gttttgttta attaaagctt tcgccacgat gtggcaaatt 240 tctgaaggct cccagtgctg ttgcactggg aagtcctggt ctaatgccga ggccaaagag 300 gctcggtatg tctgcgattg tttatacaat tgcaggcttg tcaaagttga ggtagcgcct 360 cagcctccga agagtaggat agcgcctgct caacaaaaga aggagaggat agcgcctctt 420 caaaactcga atggtaggat ggcgcctacc acccccaaat tcaaaagggc ttccgtgccc 480 gacgcacctt tggttaaaca gaggtgtgat gttgttgtga gggttggccc gccggctaac 540 ctagagttgg tataccctgc cttagtgcag gaagaggtgg caaccccacc tactgaaaag 600 gtcctgcagc ctaccacaaa ggctgatgtt agggtgccag tttgctgtgc gcctaaatgg 660 atggtggcta tccccaagcc accggttaaa actgctccca gagtggagca aacacagttc 720 cctaagggag ctgtgtgtta taacggcacc aactttttgg atgccgcggg gaaagtcgtc 780 ctatctgagg gcgcaaagag gattctcaag ggaatccgcg ttgctaagca gcaacgtcaa 840 agggctgcac gtagatctgc tgcgtgcaag aaagttcgca aggccagggc tctggctttg 900 tataagcgct tgtctgaaga gcgcaccttt caggagctgc ctggaggatt tgcgggtgaa 960 attcctgctg gtttctttag ctacggtaaa accgtagctt ctcccattgc cacccctaaa 1020 aaggtggtta ccaaaagaaa gagggtgtca aagccctcta ctattgctgt tccagtgcag 1080 gacttttcct gcattgatgc cttcgattgg ggggagaaat ccttcccaaa tgaggaagcc 1140 atcgaggacg attgggtcct tgtggaaaaa cctgttttga aaaggcaggc tgcacactct 1200 gtgcagggga gggcgactga agcccttaca agatttgccg cttcaagcgg ctttacaaca 1260 aaagcccacc aaaaggtgga agagctagcc tcatctggag aggctggcca cttgttagca 1320 ggagagttcg cagagctctg tctgagatcc ctggtgtata atgatgcacc cattttatct 1380 gcctctattg aagtgcttgc ttgtgagcaa gattttaaag atgccataga gctcttcaat 1440 attgaactgg ctgaaatacc aactgattcc accacgtgtg gacggtttaa tgaatgggct 1500 tcttctgtca agactatggc aaaaggagtt ggttccttag ttggtgattt tgcccgagga 1560 gctgggaccc taacgctcat aacctttgat aaggctattg agtatttaca ggagaaggcg 1620 ctgacacttt gccaaaaagt gttcaatgct accatggtcc cttatttgag tcacctcgct 1680 gaagcttctg atattataaa gaaaatttgg aagaagctta gtgagtggat ggaaagctta 1740 aagggcaagg ctggattggc tttggaagtg ctcgcacacc atgccatctt tgctctcgga 1800 gctattgtcg ttggaggagt tgtagtcctc gttgaaaaag tacttgtagc ttgtaaagtt 1860 attcccactt gtggaattgt gctaggtgct tttttaactc ttttctttgc cagtctggga 1920 ttgacggctc tagagtgcac tgctgatgaa atttttaaaa tgcaccaatg ctgcaaaggt 1980 gctatctaca gcatgtactc agttaaagag cctgtgtgtg aaggcgaagg agactccacg 2040 acaaaaggag ttttacaggg gctagataat gctatatctg ccctgactag agttgggcaa 2100 agtatgatta gcttcaaatt gggaagcttc tcgtactatg ccaagattgc ccaaggattt 2160 gatcaacttg ctcgtggaaa gagagcaata ggcgaactta ctagctggct cattgatctt 2220 gttggaagtg tttactctaa agtctctgga caggagagca ctttctttga tgagttatct 2280 actatagttt gtcttgacgt cagatcgtgg ctgttgaaaa gcaagcgcgt gagactgcaa 2340 gttgaaacta tggccattgg agatagaata acgcttgata ctatttccaa attgcttgaa 2400 gaaggccata aaatccttgt cactgctgct ggtgtgccta ggaaaacctc cgctgatttt 2460 acaatgtgca ttaaagagga ggtttccaag ctggaagagg tccaccaaag aactgcctgc 2520 gccggcataa atgaaggtat gcgccagttt ccattctggg tatacatttt tggcgcctca 2580 cagtctggga agactaccat tgctaattct gtcattattc cttctttatt agaagagatg 2640 aatcttccca agacttctgt gtactccaga cccaagacag ggggtttctg gagcggatat 2700 gctaggcagg cgtgtgttaa agtcgatgat ttctatgcta ttgagcaaac gcccagtcta 2760 gcttcttcca tgatagatgt ggtgaattct gaaccatacc cactggatat ggcctatctg 2820 catgaaaaag gcatgtccat ggattcacca cttgtcgtga cgactgcaaa tactgtgaag 2880 ccccctacta atgctggtat tactgatgaa gcttctttct ttaatcgtcg cgctgctgtc 2940 atagaagtga gaagaaagga caatacccac tttacacccc gtgcatatga caattgcatt 3000 gaagtgaggt ttttgcacaa caagtgtgct tatgtcgatt ctgggggtgt cccccaaggg 3060 cctgccgtta acacgcccat ggaagaagga tgggtttctc ccagtgaagc tgttgctaca 3120 ctgaaaaatc ttttgggaga acacgtcctt gctgaagaag aaaagctgct ggactatcgt 3180 gagaggattg gtaatgacca tcctatttac aacgcagctc aggaattcat aggtaacatg 3240 cactatcctg gacagtggtt aaccactgaa caaaagaata cctatggaat caatgaagaa 3300 gggttctctt tccttgctgt tgacggaaag atgtacaagt acaatgtact tggaaagctg 3360 aacccctgtg agaccactcc accacatccc aatgtgattc cttggctgga ggaaaaaaca 3420 ttgactgtag tgcattggga tgtgcacaaa cacatagcta ctggtccgcg taatgcccta 3480 gtgtcctgct tcttgcaagg cctagtccaa gaccagagcc gtgtccagag tgttgagcta 3540 atgggaaaag atagctcacc agaacagcaa gcgtttttca aaagactgag cctttctgag 3600 agaatttatc tcagattgtg ccagattagg atcgatgctg ttaaaaagga acaattgggt 3660 gggccatcta gaggaactct agatgtcttg agagactgca tggccaaaag caaagctaag 3720 ttgtgtgaga actattctct ccttcttact ttggttgcag ttttagtgct gattgctaca 3780 gcctactctt tgatttctac tctggttgga ctagccgggt gtacaagctt tgctggagga 3840 atagttgcta tgaagcaagt ttcaaatgct tctattccat gttcagaacc ccggttagag 3900 gaaagatact cagctaggaa ccgttttgtg tcgcggattt ctagagctag aggtgatggc 3960 ccagctaagg gccagggaga acacgaggaa ttggtcactg aactctatta ttattttgat 4020 ggagtgaaga gattaatttc ctgttgctgg tttaaagggc gctccctact gatgacgaga 4080 caccaggcgt tggccattcc tatcggaaat gaagtgcagg ttatctatgc tgacggcacc 4140 gataggaaac ttgtatggcc aggaaaacaa gaagacggtt cttgcaaggg atacatcgaa 4200 tttcctgaaa atgaacttgt cgtatttgag catgctaggc ttttgactat gcctgtcaaa 4260 tatgaaaagt attttgtgga tgatcccgac cgtcaaatct ctcccaatgt tgctgttaaa 4320 tgctgcgtag cacgacttga ggaggggctt ccccaattcc atttttggaa taagtatgct 4380 tctgcaagga gtgacgtgca tactgttgtt gatgaagggg ggagtgcagt gtatcagaac 4440 aagatcagga ggcatattat atatgcccat gaggccaaac gaaatgactg cggggctatt 4500 gctgtagctg aaatacagcg ggttcccaag gttattgcta tgcttgtgtc tggtgccgga 4560 aatgtatcct attcttctgt gattccaaat tatagttcct cctttgttag gggggacgtg 4620 ccttatgtgc cagaagatgg gataaagact aatgggtata ggaaagtagg gtatctgatg 4680 cgaaaagatg ccccacatgt tccaagcaaa acggcattta tgaaagtgcc tgatgaaatt 4740 tgctttccat accctaatcc aaagcagcca gccatcctga gcgcagaaga tgaaagatta 4800 aagggtactg tccatgaagg atataccccg attcgggatg gtatgaaaaa atttgctgaa 4860 ccaatgcacc tgctggatga gaaattgtta gatgaagtag caggtgatat ggttcacaca 4920 tggtttgacg taggggaatt tcttgaagat gtccctctaa atattgccat taatggtgat 4980 gtggatgagg agtatttcga ccctatggcc atggacacat ctgaaggata tccagaagtc 5040 cttcagagga aagcagggga gaaagggaaa gcccgtttct ttgttgggga acctggtgca 5100 cgagagtttg tgcctgggtg tggacctgaa agagcttatt tgagtctaga agaggaatgc 5160 aaaacgcgtg tcccttctct tataagtatt gaaaccccaa aagatgagag gcttaaaagg 5220 tctaaaattg aaactccagg tacgaggttg ttttccgtgc tgcctttggc atacaatctt 5280 ttgcttagag tcaaattttt atctttttcc cgcctgttaa tgaagaagag aagccacttg 5340 ccttgtcagg taggcatcaa cccttatagt cgcgaatgga ctgatttgta ccaccgtttg 5400 gcagaaatgt cggatgttgg ttacaattgt gactacaagg ggtttgatgg tctaattact 5460 gagcaaattt tggccgttgt tgcgacaatg ataaatgcgg ggtatcaaaa ccctgttgct 5520 aatcaacaac gttccaatct tttgctagct ataagtggcc ggctctctat ttgtggaaac 5580 caggtttatg aaacagaagc cggtattcct tctggatgtg cactaacagt ggtcataaat 5640 tctatattta atgaactgtt aatgcgctac tgtttcaaga agattgtccc tcctgtctac 5700 cgggaatgct ttgatagatg cgtcgttttg atcacctatg gtgatgataa tgttttcacc 5760 gtatcgcaat caatcatgga aagcttcact ggagatgctc ttaaagccga gatggctaat 5820 ctaggagtga caattactga tggcaaagat aagagtcttg ccacgattcc agcacgccct 5880 ctgctggagt tggaattttt gaaaagaggg ttcaagagag ggaatggagg catgatttat 5940 gctcccctgg aaaaactgtc catcatgagt tcacttgtgt atatacgtag tgatgggtca 6000 gatatgttgc agaaattagt cgacaatgta aatagtgctt tagtcgagtt gtttttgcac 6060 caggacaggg agtattcaga gagtgtccga aatttctacc ttgagaagct tcccccaggg 6120 tcttataaag aattgacaac atggtatcag gctcagacct tccatgaatg tcaacttagt 6180 ggggagagca actggaaacc ccagggatta attgaaataa gccatggtgc tggttttgcc 6240 agtttcgtcc aacaggatgg aactgagttg gagcgccatg acatttgtcc tgggttggct 6300 atatctggag ctaggtatat tgccaagaaa gaagagatac tgatgtctct tagctccctt 6360 ttgccaggtg atgtcaacgc tactaagctt gaactcaaat gtggagatgg tataggccgt 6420 cttccctcta aagctagtgt gttggcacaa cggaagcctg gtatcgtgat gaggttatgc 6480 aagcaggccc tcgatgagaa aaagactctt gtcattcgtg atgagagacc ttatattgga 6540 gggtgggcta tggcttgcat ttgtggagag agttttggct tttccattag ggataccctg 6600 gcactttatg ccaacttgtt aggtcccgag cggaaaaatg gattggctgg atatttttca 6660 aactttgaaa gtccagtcca tgtgaagaaa gttcacgcca ttactaatgg agaagaagga 6720 gctgctatgc tgaaggaggt gttcactttt tgtgagccca agatatatgc agctacttct 6780 tgtgacacga ggagggaaat gttgactcat ccacctgagt cctttcctaa tattgtttta 6840 attgggggag tcagtttccc aaaagaaggt ggagaacccg gagctttgta ctcccacact 6900 gatatcacta tgtccaaaaa gactaagggc gtttatgtca gtgaggccat attaaagtgt 6960 tgtctgaggt gtcctggtgt tagtaccaag acagtccttc agacttccac tgttgggagt 7020 aacttatcta aagctcattt gaaaagcctg cgccaattac aaacgcatca gtgtgtgcgt 7080 aggtagctct tcatctaacc aggcaagccg gcagactacg tgtgctgcta ccatggaact 7140 acatggtcta gaatggtact gggataacca tcaataaata acccagtttt cgcgctgctc 7200 atgctcttgt gggcgcgtca tatttagagc aacttgtatt atatttatat ttagcttgtt 7260 tactgctttt gtgtgtttaa tttcatgctt atagtggcga cagtgtgttg tttgtccttt 7320 ggacacactt gccttgttgg acgcaaaaag attttatttt ctttttactg cttttgtaaa 7380 tttc 7384 //