ID GQ305131; SV 1; linear; genomic RNA; STD; VRL; 7492 BP. XX AC GQ305131; XX DT 02-AUG-2009 (Rel. 101, Created) DT 10-JUN-2010 (Rel. 105, Last updated, Version 2) XX DE Tomato chocolate spot virus segment RNA1, complete sequence. XX KW . XX OS Tomato chocolate spot virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Torradovirus; OC unclassified Torradovirus. XX RN [1] RP 1-7492 RX DOI; 10.1007/s00705-010-0653-9. RX PUBMED; 20376682. RA Batuman O., Kuo Y.W., Palmieri M., Rojas M.R., Gilbertson R.L.; RT "Tomato chocolate spot virus, a member of a new torradovirus species that RT causes a necrosis-associated disease of tomato in Guatemala"; RL Arch. Virol. 155(6):857-869(2010). XX RN [2] RP 1-7492 RA Batuman O., Kou Y.-W., Gilbertson R.L.; RT ; RL Submitted (22-JUN-2009) to the INSDC. RL Plant Pathology, UC Davis, One Sheilds Ave., Davis, CA 95616, USA XX DR MD5; 88a8ca4a0cdaffe9ef14417ab85e1713. DR EuropePMC; PMC2861173; 20229114. DR EuropePMC; PMC2880234; 20376682. XX FH Key Location/Qualifiers FH FT source 1..7492 FT /organism="Tomato chocolate spot virus" FT /segment="RNA1" FT /host="tomato" FT /mol_type="genomic RNA" FT /country="Guatemala" FT /db_xref="taxon:661101" FT 5'UTR 1..138 FT CDS 139..6606 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:C7EXM2" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:C7EXM2" FT /protein_id="ACT79982.1" FT /translation="MAFSKFYNKRVSDQMESSTSSSSSFFGELTGSIAKFSRAIGNITS FT VSQKISDHLDELKPSISDASTSFVSTCSTVNKVLDKINALIEPFLKAYSFLATMYKSIK FT DMVLKLFEGLSSKIKLGFSWVLKKSEDVDVVVYGFLVFAISMLVLLYVCPSNIVEGVSS FT TVKNIFFIVGNMFSSLYNLDWFPKWAERFTLVAQASMLPGESVSHTPTSQLMSTILAFG FT ISTLVFIAVPGRPNGLNNPLSKILYSTGSGAQQCNQLFTLYRNMKDCTSQAFSWVLEII FT VDMFGFKNPILSAISATLATDLFEWMKEVDAVCDPATRLENFANKAFPTKLNHLREQAL FT KISAYIATHPVAAFMSHRVSAAINQLEKVYAESCRHMGVGQYRIEPFMVQWFGASGCGK FT STSMRLFINDVLDRMGEPKLNRLYAVSKRDAYWSNYAHQTAILMDDMGALRDGAGQCQD FT IKDLIDIKSTQPAPLPMAAVEDKGRHFTSKYIFATSNLISAPAQCGLTYPDAFERKRDI FT LVECIKDGKFSTEDPTGHLKFNIVESRRPHAITHRGLSYSDLLDYVVAKCQVHAEVSKQ FT LFEAESGIASKTAQVQVSSKEVVASVDGARLKTKQDNPILSPVVIDDNDRIIYSRELTV FT EALKFAYQGSMDPEELFPHDHHKQALFDSLDADHKQVFLKWRTDMLYRGADAEQYRWLV FT QNIPDDYIMHFKSFIYASTICEKKLSVQTEMRTGFAHKCIDADVDTLICIEQMPPFVQF FT LYTAFVRYWCNKVSKQPSESWVKVCYHKIIDYIQEAWWNMPYALRLLIKAGLIIMALNG FT VFGCITAFLACWQSNTFPSASGRGGVTNESNSISSKKNFGKNKLKNMLVGQGAQSLTQD FT WASEDGFVNHSLKKNLVVLRLGEGVYFRGTYVCSGWIMTVAHAFHNVRDGTPFTIVHPN FT SRSKVQYNAREAKVIEGQDIILLRVGDPDGPKPDIRKHFPRKDEVCFTKGSQGLCCRAV FT ASTDPRNGNLELLKMPVMMSKGYTVKVEYELDTSSFKICSQNSYEYHMNGENGDCGTLL FT LLPSVQNKQPMIVGIHCASYDGIAAERGFISSNATAIYREQLEDLPVGPVKAAMVRCDI FT LKSIRSREAALFEENQVSFLGTVPQELAATVPHKSTLRRSQLFEAFGPAETAPSILTVN FT DKRGEGFDPYVAGVMKYNETAHNFDEGIAKMAFETLKCALLPVMKNQKVPGGMPCARDE FT DVVLNGIDGWDYYDGMELSTSCGYPFNKMGMGLNKREFVETTGVGDRVELKRSTPVFEA FT WEELDVQVRKGVHVDLFTTQCAKDERLPLEKIYGKRKTRLFEILPFHYNMLVRKYFLDF FT SATLMSSHNAIPCKVGIDPTSSEWSLLANGFRAVSNIGFSADYSSFDGRAPVFIFQWFC FT DLVDDYYGSATGSPESNARHALLMMASCHYTLCEDKVFRLVGGMPSGFALTVIFNSLLN FT EFYMRYAFISLLRRPHIAARAIGVKPHDFNQLFVAVYGDDNLVAVPLHLQWYSLPNIAQ FT ELDMVNVVIKNGLDKSMDVNEVQFQDLSELTFLSRGFKRHALGYHMAPLKWVSIIEPMY FT WIRPAPGCPDAQAMMENVETGIREAFHHGQVAYEKLVADVQEALNERGFRATIFPSYLE FT VEQEWIAKVTGNADVMTICEMARAAISYTPLEPGSKVENFERDLNWFAPNIGFCSARTA FT SHYSWDDETIVVNCTGAKKSNWVRGPANWKDFEGQMWPYTISAILDAQRSKAAEGKAIV FT NTIFVCGNGYAVGPVCAALMALATRQFCAEDIIVRLRTIANVLDLNTYPGGCAQYFLQC FT VPHGDKVAQAGISLHSSFAHQGFELGNFRIIRGDISKTTALRMPYVVGPNGGWGNFSTQ FT ELTTLLSYLGKGYAELVSRNTKLTLYFKNMSQEDVQQLITFVKLQGYYPSEVTVGQLKN FT FVDAEQLVSKRKEGTLHRVVFTKRVLGSTWKLNGDNIMSTLSAESLFPGPLSASVLKVL FT LSKHTRNMSCQNIGLALKIYLLNFHHITAEMLEKFENMFQRKLPDKLLFETLVWLEESF FT RSQIVIDHSVLQRFNKNLFKAREHGFSLHPEMINMNAVDALVFTLRENFLDSEKTYCVA FT PELNLGAFLFLTILGLSKQDSDILQDVQSTFVRNCQSILTNYQEP" FT mat_peptide 397..495 FT /product="helicase" FT mat_peptide 871..1071 FT /product="protease" FT mat_peptide 1306..1557 FT /product="RNA-dependent RNA polymerase" FT 3'UTR 6607..7473 FT polyA_site 7473 XX SQ Sequence 7492 BP; 2077 A; 1490 C; 1759 G; 2166 T; 0 other; aaaagaatta tatacagaga ttgcaaccta cgtcgttgtc cacagaccaa gtctctgtta 60 atcaatatat cgttcttgcc cacctttctt ctctaatctc ttatcttctc tccttacatc 120 aagtttctaa cttctacaat ggctttctca aagttctata acaaaagagt gagtgatcaa 180 atggagtctt ctacatcatc atcttcttct ttctttggtg agttgacagg ttccattgct 240 aagttttcta gggcaattgg taacattact tctgtttccc agaagatttc agatcatctg 300 gacgaactca aaccctctat aagtgatgct tccacatctt tcgtatctac ctgtagcact 360 gtgaacaaag tgttagataa aataaacgct ttgatagaac ctttcctcaa agcgtattcg 420 tttttagcca ctatgtacaa atcaattaaa gatatggtcc tcaagttatt tgagggcctt 480 tctagtaaaa taaagttagg cttttcctgg gttttaaaaa agagtgaaga tgtagatgta 540 gttgtatatg gatttttagt ttttgccatt tctatgttgg ttcttttgta tgtgtgtcca 600 tcaaatattg tggagggtgt ttctagtact gttaaaaata ttttctttat agttggtaac 660 atgttttcta gtttgtacaa tttagattgg ttcccaaaat gggctgagag gtttactctg 720 gtggcgcaag ccagtatgtt acctggtgaa tcggtgtctc atacgccaac ctcgcaactc 780 atgtcaacca tcctggcatt tggaatatcg actctggtgt tcatagctgt gccaggacga 840 cccaatggat taaacaaccc gctatccaag atcttgtatt caacaggtag tggagctcaa 900 cagtgcaatc aactcttcac gctttaccgc aacatgaagg attgtacttc acaagcattt 960 tcttgggttc ttgagattat agtggacatg tttggattta agaacccgat attgtctgct 1020 attagtgcta ccttggccac agatctattt gaatggatga aagaagtgga tgctgtgtgt 1080 gatccagcca cgcgtcttga aaattttgcc aacaaggctt ttcccacaaa gctcaatcat 1140 ttaagagaac aagctctcaa aatctcagca tatattgcaa cgcatccagt tgctgcattc 1200 atgagtcatc gcgttagtgc agcaattaat cagcttgaaa aagtgtatgc tgagagctgc 1260 agacacatgg gagtcggaca atacaggatt gagcccttta tggtgcaatg gtttggagct 1320 agtggctgtg gcaagtcaac atccatgaga ttgtttataa atgatgtgct cgatagaatg 1380 ggagagccta aactcaaccg tctctatgca gtgagtaaga gagatgcgta ctggtcaaat 1440 tatgcgcatc aaacagccat tcttatggat gacatgggag ctttgcgcga tggtgcgggt 1500 caatgtcaag atatcaaaga tctcattgac atcaagtcaa cgcagcctgc accgttacct 1560 atggctgctg tggaggataa agggaggcac tttacttcca agtatatctt tgcgacctcc 1620 aatctgattt ctgctccagc ccagtgtggc ctcacctatc ctgatgcttt tgagcgcaaa 1680 agggacatcc tggtggaatg catcaaggat ggaaaattct caactgaaga ccccactggc 1740 catctcaaat tcaatattgt tgagagcagg cgaccacatg ccatcacaca ccgtggtttg 1800 tcttacagcg atttgttgga ctacgtggtg gcaaagtgtc aggttcatgc tgaagtttcc 1860 aagcaattgt ttgaggctga atctggcatt gcgagcaaaa cagcccaggt acaagtgtcc 1920 tcaaaggaag tggtggcatc tgttgatggg gccaggctta aaacaaaaca ggacaatccc 1980 attttgtcac cagttgtcat agatgataat gataggataa tttattcaag agagctgaca 2040 gtggaagctc tcaagtttgc ctatcaaggg agcatggacc cagaggaact ttttccacat 2100 gatcaccaca agcaggctct ctttgattct cttgatgcgg accacaagca agtgtttctc 2160 aaatggagaa cagacatgct ctaccgaggg gctgatgctg agcagtatag atggttggtg 2220 cagaatattc ctgatgatta tataatgcac tttaaaagct tcatttacgc atcaactatc 2280 tgtgagaaga aattgtcggt gcagactgag atgagaactg gatttgcgca caagtgcatt 2340 gatgctgatg ttgacacact catatgcatt gaacagatgc ccccttttgt ccaatttctt 2400 tacactgcct ttgttagata ctggtgtaac aaagtttcaa agcagcccag tgaatcatgg 2460 gtgaaggtat gttatcataa gataattgat tacattcaag aagcttggtg gaacatgcct 2520 tatgctctta gattgcttat caaggcaggc ttaataataa tggctctaaa tggagttttt 2580 ggttgcatta cagcatttct ggcctgttgg cagagcaaca catttccaag tgcgtctgga 2640 aggggaggcg tgacaaatga gtccaacagc atatccagca agaaaaattt tgggaaaaat 2700 aagctcaaga acatgttagt tggccaagga gctcaaagtt tgacacaaga ttgggcatca 2760 gaagatggat ttgtcaacca cagtctaaag aagaatcttg tcgtcttacg acttggggaa 2820 ggtgtatatt tccgggggac ctatgtgtgt tctggctgga ttatgactgt tgctcatgct 2880 tttcacaatg ttcgtgatgg tacacctttt accatagtcc atccgaattc aaggtcaaaa 2940 gtgcagtaca atgccagaga ggctaaggtg atagagggtc aggacatcat tctgctgaga 3000 gttggcgatc ctgatggtcc aaagcctgac ataagaaaac actttcctcg caaggatgaa 3060 gtgtgtttta ccaaagggtc tcaaggactg tgttgcaggg cggtggcatc aacagatcca 3120 agaaatggaa atctagagct actcaaaatg ccagtcatga tgtcaaaggg ctacactgtg 3180 aaagttgagt atgaattgga cacatctagc ttcaagatat gttcccagaa ctcctatgag 3240 taccatatga atggggaaaa tggtgactgc ggaacgttgc tgttgttacc cagtgtgcag 3300 aacaaacagc ccatgattgt tggcatacac tgtgcatctt acgatggtat tgcagctgaa 3360 cgtggcttta tttcctcgaa tgcaacagca atctacagag agcagctgga agatttacct 3420 gttggacccg tcaaagctgc catggttcgc tgtgatatcc ttaagtccat cagaagtaga 3480 gaagctgcct tgtttgagga gaatcaagtt tcatttcttg gcactgttcc acaagaattg 3540 gcagcaaccg tcccacacaa gtcaacactc agaagaagcc agctgtttga ggcttttgga 3600 cctgcagaaa cagcaccatc aatactcacc gtcaatgaca agaggggtga gggctttgat 3660 ccatatgttg ctggggtcat gaaatacaat gaaacagcac acaattttga tgaaggaatt 3720 gccaagatgg cctttgagac cctcaaatgt gctttgttgc ccgtcatgaa aaatcaaaag 3780 gtgccaggcg gaatgccatg cgctcgtgac gaagatgttg tgctcaacgg tattgatggt 3840 tgggattatt acgatggtat ggagctgagc acttcatgtg gttatccctt taacaagatg 3900 ggtatgggtc tcaacaaaag agagtttgtg gaaaccactg gtgtggggga ccgcgttgag 3960 ctcaagcgat caacacctgt gtttgaagcg tgggaggagt tggatgttca agtgagaaaa 4020 ggcgtccatg tggacctgtt caccactcag tgtgctaaag acgagcgcct cccacttgag 4080 aaaatatatg ggaagagaaa gacacggttg tttgagattc ttcctttcca ttacaatatg 4140 ctcgtcagaa agtactttct tgatttttca gcaactctca tgtcctcgca caatgcaatt 4200 ccatgcaaag taggaattga tcccacgagt tctgaatggt cgctcctagc caatgggttt 4260 agagcagtct ctaacattgg gttctcagca gactattcaa gctttgatgg tcgtgctcca 4320 gtgtttattt tccagtggtt ttgcgatctt gttgatgact actatggttc tgctactggg 4380 agtcctgaat caaatgcccg ccatgctcta ctcatgatgg cctcatgtca ctataccctt 4440 tgtgaggaca aggttttcag actggttgga ggcatgccgt caggttttgc actaacagtg 4500 atcttcaact cattactgaa tgaattctat atgcggtatg ctttcatttc acttttgcga 4560 aggccgcaca ttgcagcacg agcgattggt gtaaaaccac atgattttaa ccagcttttc 4620 gttgctgtgt atggagatga caaccttgtt gctgttccct tgcacttgca gtggtattca 4680 ttgcccaaca ttgcacaaga actggatatg gtaaatgttg taattaaaaa cggtttggac 4740 aaatcaatgg atgtgaatga ggtgcagttt caggatttgt ctgaactgac ttttctgagc 4800 agagggttca agagacatgc tctgggctac catatggcac cgcttaagtg ggtatccata 4860 atagaaccaa tgtattggat acgaccagca cccggttgtc ctgatgcaca ggcaatgatg 4920 gaaaatgttg aaactggcat aagagaggcc tttcatcatg gtcaagttgc atatgagaaa 4980 ttggtggcag atgtgcaaga agcactgaat gaacgtggat ttcgtgccac aattttccct 5040 tcctacctgg aagtcgaaca agaatggatt gccaaggtta ctggaaatgc tgatgtgatg 5100 acaatctgcg aaatggcaag agctgcgatt tcatacaccc cgttagagcc tgggagcaaa 5160 gtggaaaact tcgaaaggga tttgaattgg tttgctccaa acataggctt ctgttctgca 5220 cgaactgctt ctcactacag ttgggatgac gaaaccattg tggtaaattg cacaggtgca 5280 aagaagagca attgggtgag aggccctgca aactggaagg attttgaagg acaaatgtgg 5340 ccatacacaa tttctgcgat tctggatgct caacgcagca aagctgcgga aggaaaggcc 5400 attgtaaaca ccatatttgt ctgtggtaac gggtatgcag taggacctgt gtgtgctgca 5460 cttatggctt tggcgactag gcagttttgt gctgaggaca ttattgtaag gttgcgcaca 5520 attgctaatg tgctggattt gaacacatac cctggaggtt gtgcacagta cttcctacag 5580 tgcgtccccc atggtgataa agtggcacaa gctggtattt cgctgcacag cagttttgca 5640 catcaaggtt ttgaattggg caatttcaga ataatccgtg gtgacatctc aaagactact 5700 gccttgagaa tgccatatgt ggttggaccc aatggaggct gggggaattt ttcgacgcag 5760 gaactcacaa ccctcctatc ttatctcgga aaaggctatg ctgaacttgt gagtcgcaac 5820 acaaagttga ctctctattt caaaaacatg agccaagagg atgtccaaca gctgatcacc 5880 tttgtcaagt tgcagggtta ctatcctagc gaagtcacag tgggccaact caaaaatttt 5940 gttgatgcag agcaactggt gtccaagcgc aaggagggaa ctcttcaccg tgttgtgttc 6000 accaaaagag tgcttggatc gacatggaaa ttaaatggtg acaacatcat gtcaacctta 6060 tctgcggaaa gcctgtttcc tggtcccttg tctgcttctg tactgaaagt attgctgagc 6120 aagcatacca ggaacatgag ctgtcagaat attggcttgg ctctcaagat ttatcttctc 6180 aatttccatc atatcactgc ggagatgctt gagaaatttg agaacatgtt tcaaagaaag 6240 ttgcctgata agttgctttt tgaaacactg gtttggttag aggaaagctt tcgttctcaa 6300 atagttattg atcattctgt actgcagcgc ttcaataaaa atctgttcaa ggcaagggag 6360 cacggatttt ctttgcaccc tgaaatgatc aacatgaatg cagtggatgc actcgttttc 6420 acactaagag aaaattttct cgattcagaa aagacctact gtgtggcacc agagttgaac 6480 cttggggcct tcctcttttt gacaatcttg ggcctcagca agcaagacag tgacatcctt 6540 caagatgtcc agtccacttt tgttagaaac tgtcaatcca tccttacaaa ttatcaggag 6600 ccttgagtca ggcattatga ctcagtttgt acaacttaca tgtgtactgt aattaatgtg 6660 agttgtggaa ggattgcatg aatataacgg agagtactgt tctttattga atgggagtcc 6720 ggtccacttt gtgggtaccc gtgaatctac atgggttaga gatttgcacg cctctcttta 6780 aatatggttc gtgtaccctg cttggctaga aagcaattgt ttggtgttgt caacgcgccg 6840 cctctggcca agaaaacacc ccttaggctt tattggtaaa gtcaagatgt ggagaaggaa 6900 tgccagcaag cataagcaga gtctcttagg gtcgggctta agatggcagc cagaattaga 6960 gcctttgagt atgcttgtgg gcatctggtt ttcacatcaa ctcgtttgga gtataaacaa 7020 ctcgtgtgat ggtgtaatca cgtaaagcaa tgacacccgg ggtgtgcttt ccctagttaa 7080 cgtaagtaca ggttgttctc ctataggaac tagagcgttg gtctcaactc aaagagagac 7140 ccgtttgaaa atcgataaat ttccgtagct tgcgtcaagc tgctgttgtt aggggcaaca 7200 gtgaagaatc atcacacctc ttcttcccta ggttcgtcca gaggtttcag agtgatggct 7260 tctttgtcaa gaagtaaaga atgacacgtg ttgcgtcgac aatgcaccgt atggtttggt 7320 tagccataaa catatatatt atattagatg gttttatctg tgtgttctga tgattgtaaa 7380 cttactttca attattagtg gcgacaggag aggtttgtcc ttttactctt cttgctatgt 7440 tggacaaaaa aaagattttc tttcttttat tttaaaaaaa aaaaaaaaaa aa 7492 //