ID GQ259476; SV 1; linear; genomic RNA; STD; VRL; 4612 BP. XX AC GQ259476; XX DT 14-OCT-2009 (Rel. 102, Created) DT 14-OCT-2009 (Rel. 102, Last updated, Version 1) XX DE Carnation Italian ringspot virus isolate Gyp1 replication-associated DE protein 2, replication-associated protein 1, coat protein, movement DE protein, and silencing suppressor genes, complete cds. XX KW . XX OS Carnation Italian ringspot virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Tombusvirus. XX RN [1] RP 1-4612 RX DOI; 10.1007/s00705-009-0491-9. RX PUBMED; 19768632. RA Koenig R., Lesemann D.E., Pfeilstetter E.; RT "New isolates of carnation Italian ringspot virus differ from the original RT one by having replication-associated proteins with a typical RT tombusvirus-like N-terminus and by inducing peroxisome- rather than RT mitochondrion-derived multivesicular bodies"; RL Arch. Virol. 154(10):1695-1698(2009). XX RN [2] RP 1-4612 RA Koenig R.; RT ; RL Submitted (11-JUN-2009) to the INSDC. RL Institut fuer Epidemiologie und Pathogendiagnostik, Julius Kuehn Institut, RL Bundesforschungsinstitut fuer Kulturpflanzen, Messeweg 11, Braunschweig RL D38104, Germany XX DR MD5; 583e7731ccb886b8da6e76b5827e8001. DR RFAM; RF00171; Tombus_5. DR RFAM; RF00215; Tombus_3_III. DR RFAM; RF00510; Tombus_IRE. XX FH Key Location/Qualifiers FH FT source 1..4612 FT /organism="Carnation Italian ringspot virus" FT /host="Gypsophila paniculata" FT /isolate="Gyp1" FT /mol_type="genomic RNA" FT /db_xref="taxon:39443" FT CDS 142..2598 FT /codon_start=1 FT /transl_except=(pos:1030..1032,aa:OTHER) FT /product="replication-associated protein 2" FT /note="P1-RT; readthrough of stop codon" FT /db_xref="GOA:D0E2S9" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:D0E2S9" FT /protein_id="ACX53271.1" FT /translation="METIKRMIWPKKEIFVGEFATGVNRTAPVDIFQLVCRVVLRYMRT FT GKIECDSDSMTKFIVELLKTDCAAKWEWFMKRRQRGDYVVPLSIAAIPIIPLLSYATRV FT RAVSVKAFGNELSFNVRVPRPSVPKKGLLLRLAAGLALAPICALAVYATLPREKLSVFR FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLLTGSRLTKVIASTGRPRRRPYAAK FT IAQVARAKVGYLKNSPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSQESLGVKXGGLVRLPGVVTQINRDIPSDVLLPQEVLEVRTGPPNAKDRNIF FT MVAGCPSQARFLVHNHCLKNLKRGLVERVFCVERNGKLARTPQPTKGAFGRLSPFRKAV FT CEKVGVAHRLGYDGFLSYYDGAKLRTYTRAVESLHITPVSERDSHLTTFVKAEKISTSK FT GDPAPRVIQPRNPRYNVELGRYLRHMESKLMKAVDGVFGETTCIKGYTADEVGAIFREK FT WDRFDKPVAIGLDASRFDQHCSVEALQFEHSFYRAMYPGNKLLGKLLDWQLHNKGKGYV FT PDGTITYRKEGCRMSGDINTSLGNYLLMCAMVHGYMRHLGINEFSLANCGDDCVLILER FT RNLKQVQKTLPEYFLNLGYTMKVEPPVFQLEEVEFCQAHPVQFQGGWKMVRNVRTAMSK FT DVHCVNNIRDLATRRAWSNAQHHGGLALSAGIPVVEKFYSRFTLYDVPRKHQRIDTVTN FT VHKWRGSGGSYVVTPESRASFWAAFGLTGDEQLALEDRLDRWEMDLFGEEGVDAHEPSI FT LDSAVA" FT CDS 142..1032 FT /codon_start=1 FT /product="replication-associated protein 1" FT /note="P1" FT /db_xref="GOA:D0E2T0" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:D0E2T0" FT /protein_id="ACX53270.1" FT /translation="METIKRMIWPKKEIFVGEFATGVNRTAPVDIFQLVCRVVLRYMRT FT GKIECDSDSMTKFIVELLKTDCAAKWEWFMKRRQRGDYVVPLSIAAIPIIPLLSYATRV FT RAVSVKAFGNELSFNVRVPRPSVPKKGLLLRLAAGLALAPICALAVYATLPREKLSVFR FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLLTGSRLTKVIASTGRPRRRPYAAK FT IAQVARAKVGYLKNSPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSQESLGVK" FT CDS 2610..3770 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q64IS9" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q64IS9" FT /protein_id="ACX53272.1" FT /translation="MTMVLRNPGTMVPQGGNKMSKMAKNAFQQGLQAGAAYLVSNPKGA FT LKKGKDAWNYMTAGGVPSGIVHSGGMKGAIMAPVAVTRQLRGSKPKFSGRTSGSVTVSH FT RELITQVNNSTQFVVNGGVTGNLRQVNPLNGTLFSWLPSIAANFDQYTFNSVTLHYVPL FT CATTETGRVAMYFDKDSEDLEPADRVELANYATLKETAPWAEAMLRIPTDRIKRYNDDS FT SVNDRKLIDLGQIGIATYGGSGTNPVGDVFISYSVTLHFPQPTAAGVQTRRLDLTSVLD FT TNVGPSYTITSSTATVYTVAFRTVGTFMLFGAVRSTGSPVIGLSSANIAINSNTTLNTA FT GTAFSYMTNVTVSALPASITFTVVGVITSSTSHAVRASRTNNADLI" FT CDS 3805..4374 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:D0E2T2" FT /db_xref="InterPro:IPR005332" FT /db_xref="UniProtKB/TrEMBL:D0E2T2" FT /protein_id="ACX53273.1" FT /translation="MDTEYEQVNKPWNELYKETKLGNKLMVNVGMEDQEVPLLPSNFLT FT KVRVGLSGGYITMRRIRIKIIPLVSRKAGVSGKLYLRDISDTTGRKLHCTESLDLGREI FT RLTMQHLDFSVSTRSDVPIVFGFEELVSPFLEGRELFSISVRWQFGLSKNCYSLPQSKW FT KVMYQEDALKALKPSKKKASKTDSSV" FT CDS 3837..4355 FT /codon_start=1 FT /product="silencing suppressor" FT /db_xref="GOA:D0E2T3" FT /db_xref="InterPro:IPR004905" FT /db_xref="InterPro:IPR036131" FT /db_xref="UniProtKB/TrEMBL:D0E2T3" FT /protein_id="ACX53274.1" FT /translation="MERAIQGNQAREQANGERWDGGSGGTTSPFKLPDESPSWAEWRLH FT NDEKNSNQDNPLGFKESWGFGKVVFKRYLRYDRTETSLHRVLGSWTGDSVNYAASRFFG FT VNQIGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQLTPVEVESNVSRGCPEG FT TEAFEEESE" XX SQ Sequence 4612 BP; 1229 A; 951 C; 1259 G; 1173 T; 0 other; agttcgtttg tctggtgact tgcgctaacc gttgctttgc gtagggaatt tctctccacg 60 actactatct ttagttttgg ggtttgaagg ttgggtctac ctttcggggg gataaattgt 120 aacttccaac aaataagcga catggagacc atcaagagaa tgatctggcc taagaaggag 180 attttcgtag gagaattcgc gaccggagtt aataggacgg caccggtgga catcttccag 240 ttggtgtgtc gtgtggttct aagatacatg aggacaggga aaatagagtg tgattcagac 300 agcatgacta agtttatagt tgaattacta aagactgatt gtgctgctaa atgggagtgg 360 tttatgaaga gacggcagag gggtgactat gttgtccctc tatctatagc cgccatccca 420 atcataccgc tgttgagtta tgccactagg gtacgcgcag tctcagtcaa agctttcggc 480 aatgaacttt cgttcaatgt ccgagtgcct agaccatctg tacctaagaa gggcttactc 540 ctcagactgg cggcaggtct agcgttagca cctatatgcg cgctggcagt gtacgctacc 600 ctacccaggg aaaaactgtc ggtatttagg ctaagaaccg aggcacgtgc acacatggag 660 gatgagaggg aagcgactga ttgtttggtg gttgagccgg cacgggaact taagggtaag 720 gatggtgagg atctcctcac tggtagtagg ttgactaagg tgattgcgtc cacgggacgc 780 cctcgtagaa ggccttatgc ggctaaaatc gctcaggtcg cgagagctaa ggtgggttac 840 ctcaagaata gtcctgagaa tagactgatc taccagcgag tgatgattga gatcatggac 900 aaagactgcg tcaggtacgt tgacagggat gtcatattgc ctttggctat tggatgctgt 960 tttgtctatc cggacggagt ggaggagtcg gcggcactat ggggttccca ggaatccctt 1020 ggtgtcaaat agggaggcct agtacgtcta cctggggttg tgacacagat caatcgagat 1080 atcccatctg atgtgttact tccccaggag gtgctagagg ttcgtacagg acctcccaat 1140 gctaaggacc gtaatatatt tatggttgca ggttgcccat cacaggcacg gttcttagta 1200 cataatcact gcctgaaaaa ccttaaaagg ggtcttgtgg agagagtctt ctgcgtagag 1260 agaaacggga agctcgctcg cactccacaa cctaccaaag gagcctttgg acgtctttcc 1320 ccgttcagga aagcagtttg tgagaaggtc ggagtagccc atcgacttgg gtatgatgga 1380 tttctgtcat actacgacgg tgcgaaactc cgtacttaca cacgagctgt ggagagtctg 1440 catatcacac ctgtctcgga gagggatagt catctgacta ccttcgtcaa ggcagagaag 1500 atatcgacgt ctaaaggtga cccagcacct agggtgattc agcctcgaaa ccctaggtac 1560 aatgtcgaac ttggaagata tctacggcat atggaatcca agctgatgaa agctgttgat 1620 ggcgtgttcg gagagacgac gtgcatcaaa ggatatacag ccgacgaggt gggtgcaatt 1680 tttcgagaga agtgggacag gtttgataaa cccgtagcca taggtctcga tgcatccagg 1740 tttgatcaac actgttccgt tgaagccttg cagtttgagc atagcttcta cagggccatg 1800 taccctggca acaagctttt gggcaagttg ttggactggc aactccacaa taaagggaaa 1860 ggttatgttc ctgatggaac tataacatat cgcaaggagg ggtgccgtat gagtggggat 1920 ataaacactt cgttggggaa ctatctattg atgtgcgcta tggtacacgg gtacatgcgc 1980 catttgggga ttaatgagtt tagtctggca aactgtgggg atgactgtgt tcttatacta 2040 gaacgtagga atcttaaaca ggtacagaag actctgcctg agtatttcct taacctggga 2100 tatactatga aggtggagcc gcctgtattt caattggaag aggttgaatt ttgccaggca 2160 caccccgtac agtttcaagg tggttggaag atggtccgta atgtccgtac cgcaatgagc 2220 aaagatgtgc attgtgtcaa taacatacgc gatttggcga cgaggagagc gtggagtaat 2280 gcccaacacc atggtggatt agcacttagt gctggtatac ctgtggttga gaagttttac 2340 tccaggttca cattgtatga tgtacctcgc aaacatcaac gtattgacac tgtcactaat 2400 gttcataagt ggcgcggatc tggcggaagt tatgttgtga ctcctgaatc tagggctagc 2460 ttttgggctg cctttggctt gacgggggat gagcaactgg ctttggagga tcgtctggat 2520 agatgggaga tggatctatt tggagaggag ggtgttgacg ctcatgagcc cagcattctc 2580 gactccgccg tagcttgacc aagcaagaca tgacaatggt actaagaaat ccaggcacaa 2640 tggtgcctca aggcggcaac aaaatgagta agatggcgaa gaatgcattt caacaaggat 2700 tacaagcggg ggcagcttat ttagtgagca accccaaggg ggcattaaag aaagggaaag 2760 acgcatggaa ttacatgaca gcagggggtg tgccaagtgg tatagtacac tcagggggaa 2820 tgaaaggcgc gataatggcg cccgtggcag ttaccagaca gttaaggggg agtaaaccta 2880 aattctccgg aagaacatct ggttccgtga cagtgagtca tagagagcta attacgcaag 2940 tgaacaactc aacgcagttt gtggttaatg gtggtgttac tggtaacctt aggcaagtta 3000 atcccttgaa tgggaccttg ttctcatggc tgcctagcat tgccgctaac tttgatcagt 3060 acacatttaa tagtgttacg ttgcattacg tacctttatg tgctactacc gaaactgggc 3120 gggttgcaat gtattttgac aaagattccg aggacctcga gcccgcggac agagtagagc 3180 ttgctaatta tgctacattg aaagaaactg caccatgggc cgaggctatg ttacgtatac 3240 ctactgatcg catcaaacgg tataacgatg acagcagcgt aaatgatcgc aaattgattg 3300 acctgggaca gataggtatt gcaacatatg gtggttcggg cacaaaccct gtcggggacg 3360 tgttcatatc ttacagtgtt actctacact tcccacaacc tactgcagcc ggtgtgcaga 3420 cacggcgtct tgatctcaca agtgttttag acacaaatgt cggacctagt tacactatca 3480 cgtccagtac ggctacggta tacacggttg ctttccgcac cgtgggtacc tttatgctgt 3540 ttggcgccgt gaggtctact gggtcacccg ttatcggact gtctagtgca aatattgcta 3600 ttaatagcaa caccacattg aacacagccg gtactgcttt ctcctacatg acgaatgtca 3660 cagtgtcggc tttaccggcg tctatcacat tcactgtagt tggagtaatt acttcgtcaa 3720 cttcacatgc cgtgagagca tcccgtacta ataacgcaga cctgatatag taccattgag 3780 gggcctcttg aacaagacca gttcatggat actgaatacg aacaagtcaa taaaccatgg 3840 aacgagctat acaaggaaac caagctaggg aacaagctaa tggtgaacgt tgggatggag 3900 gatcaggagg taccacttct cccttcaaac ttcctgacga aagtccgagt tgggctgagt 3960 ggcggctaca taacgatgag aagaattcga atcaagataa tccccttggt ttcaaggaaa 4020 gctggggttt cgggaaagtt gtatttaaga gatatctcag atacgacagg acggaaactt 4080 cattgcacag agtccttgga tcttggacgg gagattcggt taactatgca gcatctcgat 4140 ttttcggtgt caaccagatc ggatgtacct atagtattcg gtttcgagga gttagtgtca 4200 ccatttctgg agggtcgaga actcttcagc atctctgtga gatggcaatt cggtctaagc 4260 aagaactgtt acagcttacc ccagtcgaag tggaaagtaa tgtatcaaga ggatgccctg 4320 aaggcactga agccttcgaa gaagaaagcg agtaagacag actcttcagt ctgagttcgc 4380 tgaaacgagt gtaaatctgg catagcatac aggttactct tgttgggttc tagatgttat 4440 gatgacgagt cggtcgggct ccgcactagg tttggtcgcc taggggatgg agatatggaa 4500 agggtctcgt gtgctgttag acggtcgtaa gacgcgcttg caacatgggc ctataaccgg 4560 ataagtcata gcaatactag ccaacatgaa ttggttagat tcaagaagcc ca 4612 //