ID GQ204107; SV 1; circular; genomic DNA; STD; VRL; 2784 BP. XX AC GQ204107; XX DT 01-JUN-2011 (Rel. 109, Created) DT 29-AUG-2012 (Rel. 113, Last updated, Version 2) XX DE African cassava mosaic virus clone ACMV/PK/Mul/Har/08 segment DNA-A, DE complete sequence. XX KW . XX OS African cassava mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2784 RX PUBMED; 22899988. RA Nawaz-Ul-Rehman M.S., Briddon R.W., Fauquet C.M.; RT "A melting pot of old world begomoviruses and their satellites infecting a RT collection of gossypium species in pakistan"; RL PLoS One 7(8):E40050-E40050(2012). XX RN [2] RP 1-2784 RA Nawaz-ul-Rehman M.S., Briddon R.W., Fauquet C.M.; RT ; RL Submitted (24-MAY-2009) to the INSDC. RL ILTAB, Danforth Plant Science Center, 975 N. Warson Rd., St. Louis, MO RL 63132, USA XX DR MD5; 2ae1897925758b21bab6ee66cdb4023d. XX FH Key Location/Qualifiers FH FT source 1..2784 FT /organism="African cassava mosaic virus" FT /segment="DNA-A" FT /host="Gossypium harknessii" FT /lab_host="Nicotiana benthamiana" FT /mol_type="genomic DNA" FT /country="Pakistan:Multan" FT /collection_date="Mar-2008" FT /identified_by="Muhammad Shah Nawaz-ul-Rehman" FT /clone="ACMV/PK/Mul/Har/08" FT /db_xref="taxon:10817" FT gene 136..477 FT /gene="AV2" FT CDS 136..477 FT /codon_start=1 FT /gene="AV2" FT /product="AV2" FT /db_xref="GOA:Q6EMI2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q6EMI2" FT /protein_id="ADD92131.1" FT /translation="MWDPLVNEFPDSVHGLRCMLAIKYLQALEDTYEPSTLGHDLVRDL FT VSVIRARNYVEATRRYHHFHSRLQGSSKAELRQPIQEPCYCPHCPRHKSKTGLDEQAHV FT QKAHDVQDV" FT gene 296..1078 FT /gene="AV1" FT CDS 296..1075 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:F6J0W9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:F6J0W9" FT /protein_id="ADD92132.1" FT /translation="MSKRPGDIIISTPGSKVRRRLNFDSPYRNRATAPTVHVTNRKRAW FT MNRPMYRKPMMYRMYRSPDIPRGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTH FT RVGKRFCIKSVYILGKIWMDENIKKHNHTNNVMFYLLMDRKALWEYVPVTFGQIFNMFD FT NEPSTATIKNDLRDRFQVLRKFHATVIGGPSGMKEQALVKRFYRLNHHVTYNHQEAGKY FT ENHTENALLLYMACTHASNPVYATLKIRTYFYDSIGN" FT gene complement(1072..1476) FT /gene="AC2" FT CDS complement(1072..1476) FT /codon_start=1 FT /gene="AC2" FT /product="transcriptional activation protein" FT /note="TrAP" FT /db_xref="GOA:F6J0Y2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:F6J0Y2" FT /protein_id="ADD92136.1" FT /translation="MDLRTGELITAPQAMNGVYTWEINNPLYFTITRHQQRPFLLNQDI FT ITVQVRFNHNLRKELGIHKCFLNFRIWTTLQPQTGLFLRVFRYQVLKYLDNIGVISINH FT VIRAADHVLFNVIEKTIACQLTHEIKFNIY" FT gene complement(1217..1624) FT /gene="AC3" FT CDS complement(1217..1624) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /note="REn" FT /db_xref="GOA:F6J0X1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:F6J0X1" FT /protein_id="ADD92135.1" FT /translation="MQSSSPSQNHSTQVPIKVSHRQFKKRAIRRRRVDLVCGCSYYLHI FT NCSSHGFTHRGTHHCSSSNEWRVYLGNKQSPVFHNNQAPTTTIPAEPGHHNSPGSIQSQ FT PAEGAGDSQMFSQLQDLDDLTASDWSFLKGL" FT gene complement(1533..2609) FT /gene="AC1" FT CDS complement(1533..2609) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:F6J0X2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:F6J0X2" FT /protein_id="ADD92133.1" FT /translation="MRTPRFRVQAKNVFLTYPKCSIPKEHLLSFIQTLSLPSNPKFIKI FT CRELHQNGEPHLHALIQFEGKITITNNRLFDCLHPSCSTSFHPNIQGAKSSSDVKSYLD FT KDGDTVEWGRFQIDGRSARGGQQSANDAYAKALNSGSKSEALNVIRELVPKDFVLQFHN FT LNSNLERIFQEPPAPYISPFPCSSFDQVPDELEEWVADNVRASAARPWRPNSIVIEGDS FT RTGKTIWARSLGPHNYLCGHLDLSPKVFNNAAWYNVIDDVDPHYLKHFKEFMGSQRDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKQEALKAWALKNAIFITLTEPLY FT SGSNQSQSQTIQEASHPA" FT gene complement(2153..2575) FT /gene="AC4" FT CDS complement(2153..2575) FT /codon_start=1 FT /gene="AC4" FT /product="movement protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:F6J0Y5" FT /protein_id="ADD92134.1" FT /translation="MSFSHTQSVLSPKNTCCHSFKHSLSHLTLSSLKSVESCIRMGNLT FT CMPSSNSRAKSRLRTIVSSIVYTQAVAPVSTPTFKVPNQAQMSSHTWIRTATPSNGDDF FT RSMDDLLEEVNSPQMMLTPKRLTAAVSQKLLMSLGN" XX SQ Sequence 2784 BP; 742 A; 561 C; 684 G; 797 T; 0 other; accggttggc cccgcccccc tttagacgtg gtccccgcgc actatgtatg tcggccaatc 60 atgtcgtagc gttaaaggtt atttattagt ggtgggccac tatatacttg caggcgaagt 120 cgttgctagt gcgcaatgtg ggatccactg gtgaatgagt ttcctgactc ggtgcatggg 180 cttaggtgta tgcttgcaat taaatatttg caggccttag aggatacata cgagcccagt 240 actctgggcc acgatctggt tagagattta gtctcagtta tcagggctcg taattatgtc 300 gaagcgacca ggagatatca tcatttccac tccaggctcc aaggttcgtc gaaggctgaa 360 cttcgacagc ccatacagga accgtgctac tgcccccact gtccacgtca caaatcgaaa 420 acgggcctgg atgaacaggc ccatgtacag aaagcccatg atgtacagga tgtatagaag 480 cccagacata cccaggggct gtgaaggccc atgtaaggtc cagtcgtttg agcagaggga 540 tgatgttaag caccttggta tctgtaaggt gattagtgat gtgacacgtg ggcctgggct 600 gacacacagg gtcggaaaga ggttttgtat caagtccgtt tacattcttg gtaagatctg 660 gatggatgaa aatattaaga agcacaatca cactaataat gtgatgtttt acctgcttat 720 ggatagaaag gccttatggg aatacgtccc agtaactttt gggcagatat ttaacatgtt 780 cgataatgag cccagtactg caacaattaa gaacgatttg agggataggt ttcaggtgtt 840 gaggaaattt catgccactg ttattggtgg tccatctggc atgaaggagc aggctttggt 900 gaaaaggttt tacaggttga atcatcacgt gacatataat catcaggagg cagggaagta 960 tgagaatcac acagagaatg cgttgctttt gtacatggca tgtactcatg cctccaatcc 1020 tgtatatgct acgttgaaaa tacgtacata cttctatgac agtattggca attaataaat 1080 attgaatttt atttcatgag tcaactgaca cgcaatagtt ttttcaatta cattgaacaa 1140 aacatgatca gcagctctaa ttacatggtt aattgagata acacctatat tatccaagta 1200 tttaagtact tggtatctaa agacccttaa gaaaagacca gtctgaggct gtaaggtcgt 1260 ccagatcctg aagttgagaa aacatttgtg aatccccagc tccttccgca ggttgtgatt 1320 gaatcgaacc tggactgtta tgatgtcctg gttcagcagg aatggtcgtt gttggtgcct 1380 ggttattgtg aaatacaggg gattgtttat ttcccaggta tacacgccat tcattgcttg 1440 aggagcagtg atgagttccc ctgtgcgtaa atccatgact ggagcagttg atatggaggt 1500 aatatgaaca gccacagaca agatccactc tcctacgccg gatggctcgc ttcttgaatt 1560 gtctgtgact gactttgatt ggaacctgag tagagtggtt ctgtgagggt gatgaagatt 1620 gcattcttta atgcccaggc ctttagcgct tcttgctttt cctcgtctag gaactcttta 1680 taggacgagg ttggtcctgg attgcagagg aagatagtgg gaatgccacc tttaatttga 1740 acgggtttcc cgtattttgt gttggactgc cagtcccgct gggaccccat gaattcctta 1800 aagtgcttta ggtagtgtgg atcgacgtca tcaatgacgt tgtaccaagc agcattattg 1860 aagacctttg gactaaggtc caggtgtcca cacaggtaat tgtgtgggcc taaagatctg 1920 gcccatatcg tcttccctgt tctgctatca ccttctatga ctatactatt gggtctccat 1980 ggccgcgcag cggaagccct aacattatca gcgacccatt cttcaagttc atcaggaact 2040 tggtcaaagg aagaacatgg gaagggagaa atataaggag ctggtggctc ctggaaaatc 2100 ctttctaaat tactatttag attatgaaac tgaagtacaa agtcctttgg gactaattcc 2160 ctaatgacat taagagcttc tgacttactg ccgctgttaa gcgctttggc gtaagcatca 2220 tttgcggact gttgacctcc tctagcagat cgtccatcga tctgaaatcg tccccattcg 2280 acggtgtcgc cgtccttatc caggtatgac ttgacatctg agcttgattt ggcaccttga 2340 atgttggggt ggaaactggt gctacagctt gggtgtagac aatcgaagag acgattgttc 2400 gtaatcgtga ttttgccctc gaattggatg agggcatgca agtgaggttc cccattctga 2460 tgcagctctc tacagatttt aatgaactta gggttagatg ggagagagag tgtttgaatg 2520 aatgacagca ggtgttcttt ggggatagaa cactttgggt atgtgagaaa gacattcttg 2580 gcttgaactc taaaacgagg agtcctcatt ttgaccaagt caattggaga cactcaacta 2640 gagacactct tgagcatctc ctcctgttaa ttggagacat tatataggtg tctctaaatg 2700 gcattcttgt aataagttaa actttaattt gaatgaaaag cctcaaaagg cgcataacac 2760 ccaaggggcc aaccgtataa tatt 2784 //