ID GQ204106; SV 1; circular; genomic DNA; STD; VRL; 2782 BP. XX AC GQ204106; XX DT 01-JUN-2011 (Rel. 109, Created) DT 29-AUG-2012 (Rel. 113, Last updated, Version 2) XX DE African cassava mosaic virus clone ACMV/PK/Mul/Gos2/08 segment DNA-A, DE complete sequence. XX KW . XX OS African cassava mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2782 RX PUBMED; 22899988. RA Nawaz-Ul-Rehman M.S., Briddon R.W., Fauquet C.M.; RT "A melting pot of old world begomoviruses and their satellites infecting a RT collection of gossypium species in pakistan"; RL PLoS One 7(8):E40050-E40050(2012). XX RN [2] RP 1-2782 RA Nawaz-ul-Rehman M.S., Briddon R.W., Fauquet C.M.; RT ; RL Submitted (24-MAY-2009) to the INSDC. RL ILTAB, Danforth Plant Science Center, 975 N. Warson Rd., St. Louis, MO RL 63132, USA XX DR MD5; 3beee19380a0a2dd4c7abf46b7bf1f35. XX FH Key Location/Qualifiers FH FT source 1..2782 FT /organism="African cassava mosaic virus" FT /segment="DNA-A" FT /host="Gossypium gossypioides" FT /lab_host="Nicotiana benthamiana" FT /mol_type="genomic DNA" FT /country="Pakistan:Multan" FT /collection_date="Mar-2008" FT /identified_by="Muhammad Shah Nawaz-ul-Rehman" FT /clone="ACMV/PK/Mul/Gos2/08" FT /db_xref="taxon:10817" FT gene 136..477 FT /gene="AV2" FT CDS 136..477 FT /codon_start=1 FT /gene="AV2" FT /product="AV2" FT /db_xref="GOA:Q6EMI2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q6EMI2" FT /protein_id="ADD92125.1" FT /translation="MWDPLVNEFPDSVHGLRCMLAIKYLQALEDTYEPSTLGHDLVRDL FT VSVIRARNYVEATRRYHHFHSRLQGSSKAELRQPIQEPCYCPHCPRHKSKTGLDEQAHV FT QKAHDVQDV" FT gene 296..1075 FT /gene="AV1" FT CDS 296..1072 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:F6J0W3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:F6J0W3" FT /protein_id="ADD92126.1" FT /translation="MSKRPGDIIISTPGSKVRRRLNFDSPYRNRATAPTVHVTNRKRAW FT MNRPMYRKPMMYRMYRSPDIPRGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTH FT RVGKRFVSSPFTFLVRSGWMKILRSRITLIMCCFTCLGIEGLYGNTPQDFGQIFNMFDN FT EPSTATIKNDLRDRFQVLRKFHATVIGGPSGMKEQALVKRFYRLNHHVTYNHQEAGKYE FT NHTENALLLYMACTHASNPVYATLKIRIYFYDSVGN" FT gene complement(1069..1473) FT /gene="AC2" FT CDS complement(1069..1473) FT /codon_start=1 FT /gene="AC2" FT /product="transcriptional activation protein" FT /note="TrAP" FT /db_xref="GOA:F6J0Y2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:F6J0Y2" FT /protein_id="ADD92130.1" FT /translation="MDLRTGELITAPQAMNGVYTWEINNPLYFTITRHQQRPFLLNQDI FT ITVQVRFNHNLRKELGIHKCFLNFRIWTTLQPQTGLFLRVFRYQVLKYLDNIGVISINH FT VIRAADHVLFNVIEKTIACQLTHEIKFNIY" FT gene complement(1214..1621) FT /gene="AC3" FT CDS complement(1214..1621) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /note="REn" FT /db_xref="GOA:F6J0W5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:F6J0W5" FT /protein_id="ADD92129.1" FT /translation="MQSSSPSQNHSTQVPIKVSHRQFKKRAIRRRRVDLVCGCSYYLHI FT NCSNHGFTHRGTHHCSSSNEWRVYLGNKQSPVFHNNQAPTTTIPAEPGHHNSPGSIQSQ FT PAEGAGDSQMFSQLQDLDDLTASDWSFLKGL" FT gene complement(1530..2606) FT /gene="AC1" FT CDS complement(1530..2606) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:F6J0W6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:F6J0W6" FT /protein_id="ADD92127.1" FT /translation="MRTPRFRVQAKNVFLTYPKCSIPKEHLLSFIQTLSLPSNPKFIKI FT CRELHQNGEPHLHALIQFVGKITITNNRLFDCLHPSCSTSFHPNIQGAKSSSDVKTYLD FT KDGDTVEWGRFQIDGRSARGGQQSANDAYAKALNSGSKSEALNVIRELVPKDFVLQFHN FT LNSNLERIFQEPPAPYISPFPCSSFDQVPDELEEWVADNVRASAARPWRPNSIVIEGDS FT RTGKTIWARSLGPHNYLCGHLDLSPKVFNNAAWYNVIDDVDPHYLKHFKEFMGSQRDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKQEALKAWALKNAIFITLTEPLY FT SGSNQSQSQTIQEASHPA" FT gene complement(2150..2572) FT /gene="AC4" FT CDS complement(2150..2572) FT /codon_start=1 FT /gene="AC4" FT /product="movement protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:F6J0W7" FT /protein_id="ADD92128.1" FT /translation="MSFSHTQSVLSPKNTCCHSFKHSLSHLTLSSLKSVESCIRMGNLT FT CMPSSNSWAKSRLRTIVSSIVYTQAVAPVSTPTFKVPNQAQMSRHTWIRTATPSNGDDF FT RSMDDLLEEVNSPQMMLTPKRLTAAVSQKLLMSLGN" XX SQ Sequence 2782 BP; 741 A; 561 C; 685 G; 795 T; 0 other; accggttggc cccgcccccc tttaaacgtg gtccccgcgc actatgtatg tcggccaatc 60 atgtcgtagc gttaaaggtt atttattagt ggtgggccac tatatacttg caggcgaagt 120 cgttgctagt gcgcaatgtg ggatccactg gtgaatgagt ttcctgactc ggtgcatggg 180 cttaggtgta tgcttgcaat taaatatttg caggccttag aggatacata cgagcccagt 240 actctgggcc acgatctggt tagagattta gtctcagtta tcagggctcg taattatgtc 300 gaagcgacca ggagatatca tcatttccac tccaggctcc aaggttcgtc gaaggctgaa 360 cttcgacagc ccatacagga accgtgctac tgcccccact gtccacgtca caaatcgaaa 420 acgggcctgg atgaacaggc ccatgtacag aaagcccatg atgtacagga tgtatagaag 480 cccagacata cccaggggct gtgaaggccc atgtaaggtc cagtcgtttg agcagaggga 540 tgatgttaag caccttggta tctgtaaggt gattagtgat gtgacacgtg ggcctgggct 600 gacacacagg gtcggaaaga ggtttgtatc aagtccgttt acattcttgg taagatctgg 660 atggatgaaa atattaagaa gcagaatcac actaataatg tgctgtttta cctgcttagg 720 gatagaaggc ctttatggca atacgcccca agactttggg cagatattta acatgtttga 780 taatgagccc agtactgcaa caattaagaa cgatttgagg gataggtttc aggtgttgag 840 gaaatttcat gccactgtta ttggtggtcc atctggcatg aaggagcagg ctttggtgaa 900 aaggttttac aggttgaatc atcacgtgac atataatcat caggaggcag ggaagtatga 960 gaatcacaca gagaatgcgt tgcttttgta catggcatgt actcatgcct ccaatcctgt 1020 atatgctacg ttgaaaatac gtatatactt ctatgacagt gttggcaatt aataaatatt 1080 gaattttatt tcatgagtca actgacacgc aatagttttt tcaattacat tgaacaaaac 1140 atgatcagca gctctaatta catggttaat tgagataaca cctatattat ccaagtattt 1200 aagtacttgg tatctaaaga cccttaagaa aagaccagtc tgaggctgta aggtcgtcca 1260 gatcctgaag ttgagaaaac atttgtgaat ccccagctcc ttccgcaggt tgtgattgaa 1320 tcgaacctgg actgttatga tgtcctggtt cagcaggaat ggtcgttgtt ggtgcctggt 1380 tattgtgaaa tacaggggat tgtttatttc ccaggtatac acgccattca ttgcttgagg 1440 agcagtgatg agttcccctg tgcgtaaatc catgattgga gcagttgata tggaggtaat 1500 atgaacagcc acagacaaga tccactctcc tacgccggat ggctcgcttc ttgaattgtc 1560 tgtgactgac tttgattgga acctgagtag agtggttctg tgagggtgat gaagattgca 1620 ttctttaatg cccaggcctt tagcgcttct tgcttttcct cgtctaggaa ctctttatag 1680 gacgaggttg gtcctggatt gcagaggaag atagtgggaa tgccaccttt aatttgaacg 1740 ggtttcccgt attttgtgtt ggactgccag tcccgctggg accccatgaa ttccttaaag 1800 tgctttaggt agtgtggatc gacgtcatca atgacgttgt accaagcagc attattgaag 1860 acctttggac taaggtccag gtgtccacac aggtaattgt gtgggcctaa agatctggcc 1920 catatcgtct tccctgttct gctatcacct tctatgacaa tactattggg tctccatggc 1980 cgcgcagcgg aagccctaac attatcagcg acccattctt caagttcatc aggaacttgg 2040 tcaaaggaag aacatgggaa gggagaaata taaggagctg gtggctcctg gaaaatcctt 2100 tctaaattac tatttagatt atgaaactga agtacaaagt cctttgggac taattcccta 2160 atgacattaa gagcttctga cttactgccg ctgttaagcg ctttggcgta agcatcattt 2220 gcggactgtt gacctcctct agcagatcgt ccatcgatct gaaatcgtcc ccattcgacg 2280 gtgtcgccgt ccttatccag gtatgtcttg acatctgagc ttgatttggc accttgaatg 2340 ttggggtgga aactggtgct acagcttggg tgtagacaat cgaagagacg attgttcgta 2400 atcgtgattt tgcccacgaa ttggatgagg gcatgcaagt gaggttcccc attctgatgc 2460 agctctctac agattttaat gaacttaggg ttagatggga gagagagtgt ttgaatgaat 2520 gacagcaggt gttctttggg gatagaacac tttgggtatg tgagaaagac attcttggct 2580 tgaactctaa aacgaggagt cctcattttg accaagtcaa ttggagacac tcaactagag 2640 acactcttga gcatctcctc ctgttaattg gagacattat ataggtgtct ctaaatggca 2700 ttcttgtaat aagttaaact ttaatttgaa tgaaaagcct caaaaggcgc ataacacccc 2760 aaggggccaa ccgtataata tt 2782 //