ID GQ184145; SV 1; linear; genomic RNA; STD; VRL; 7989 BP. XX AC GQ184145; XX DT 05-JUL-2009 (Rel. 101, Created) DT 16-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Salivirus A isolate 02394-01, complete genome. XX KW . XX OS Salivirus A OC Viruses; Riboviria; Picornavirales; Picornaviridae; Salivirus. XX RN [1] RC Publication Status: Online-Only RP 1-7989 RX DOI; 10.1186/1743-422X-6-82. RX PUBMED; 19538752. RA Greninger A.L., Runckel C., Chiu C.Y., Haggerty T., Parsonnet J., Ganem D., RA DeRisi J.L.; RT "The complete genome of klassevirus - a novel picornavirus in pediatric RT stool"; RL Virol J 6:82-82(2009). XX RN [2] RP 1-7989 RA Greninger A.L., Runckel C., Chiu C.Y., Ganem D., DeRisi J.L.; RT ; RL Submitted (21-MAY-2009) to the INSDC. RL Biochemistry, UCSF, 1700 4th Street, San Francisco, CA 94158, USA XX DR MD5; 8341eaa9622e7a39447dbf71e81dd713. DR EuropePMC; PMC2709156; 19538752. DR EuropePMC; PMC3264332; 22114340. DR EuropePMC; PMC3298310; 20678331. DR EuropePMC; PMC3648030; 23542627. DR EuropePMC; PMC4507861; 26193371. DR EuropePMC; PMC4759076; 26893429. XX FH Key Location/Qualifiers FH FT source 1..7989 FT /organism="Salivirus A" FT /host="Homo sapiens" FT /isolate="02394-01" FT /serotype="1" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="16-Oct-2002" FT /db_xref="taxon:1330524" FT CDS 719..7831 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:C6KEF6" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="UniProtKB/TrEMBL:C6KEF6" FT /protein_id="ACS91540.1" FT /translation="MMEGSNGFSSSLAGLSSSRSSLRLLTHLLSLPPPNRDARRHSGWY FT RSPPTLPVNVYLNEQFDNLCLAALRYPGCKLYPSVYTLFPDVSPFKIPQSIPAFAHLVQ FT RQGLRRQGNPTTNIYGNGNEVTTDVGANGMSLPIAVGDMPTASSSEAPLGSNKGGSSTS FT PKSTSNGNVVRGSRYSKWWEPAAARALDRALDHAVDATDAVAGAASKGIKAGATKLSNK FT LAGSQTTALLALPGNIAGGAPSATVNANNTSISSQALLPSVNPYPSTPAVSLPNPDAPT FT QVGPAADRQWLVDTIPWSETTPPLTVFSGPKALTPGTYPPTIEPNTGVYPLPAALCVSH FT PESVFTTAYNAHAYFNCGFDVTVVVNASQFHGGSLIVLAMAEGLGDITPADSSTWFNFP FT HAIINLANSNSATLKLPYIGVTPNTSTEGLHNYWTILFAPLTPLAVPTGSPTSVKVSLF FT VSPIDSAFYGLRFPIPFPTPQHWKTRAVPGAGSYGSVVAGQEIPLVGYAPAAPPRDYLP FT GRVRNWLEYAARHSWERNLPWTAADEVGDQLVSYPIQPETLANTQTNTAFVLSLFSQWR FT GSLQISLIFTGPAQCYGRLLLAYTPPSANPPTTIEEANNGTYDVWDVNGDSTYTFTIPF FT CSQAYWKTVDIGTSSGLVSNNGYFTIFVMNPLVTPGPSPPSATVAAFLHVADDFDVRLP FT QCPALGFQSGADGAEVQPAPTSDLSDGNPTTDPAPRDNFDYPHHPVDPSTDLAFYFSQY FT RWFGLNEDLTPLNVTGGLFYHVSLNPVNFQQNSLLSVLGAFTYVYANLSLNINVSAPLQ FT ACTFYIFYAPPGASVPSTQTLAELSFFTHTATPLNLAAPTNITVSIPYASPQSVLCTSF FT GGFGLQNGGDPGNLHSNTWGTLILYVDLPQSDSVSVSAYISFRDFEAYVPRQTPGVGPI FT PTSTSIVRVARPTPKPRTVRRQGGTLADLILTPESRCFIVAHTTAPYYSILLVNPDEEY FT AISMFTHGDESILRYSSRGGTRLAPTAPAFFLCAAASVDTILPYPISQSHLWLSDLTGI FT PLRAVPPLTLFLSAGAALCAGAQTLIAVAQGGSAPDTPPTPNRALFRRQGLGDLPDAAK FT GLSAALENVAKVAGDADIATSSQAIASSINSLSNSIDGATTFMQNFFSGLAPKNPTSPL FT QHLFAKLIKWVTKIIGSLIIICNNPTPSALIGVSLMLCGDLAEDITEFFSNLGNPLAAV FT FYRCARALGLSPTPQSAAQAAGGRQGVRDYNDIMSALRNTDWFFEKIMSHIKNLLEWLG FT VLVKDDPRTKLNSQHEKILELYTDSVTASSTPPSELSADAIRSNLDLAKQLLTLSHAAN FT SVTHIQLCTRAITNYSTALSAISLVGTPGTRPEPLVVYLYGPPGTGKSLLASLLASTLA FT QALSGDPNNYYSPSSPDCKFYDGYSGQPVHYIDDIGQDPDGADWADFVNIVSSAPFIVP FT MADVNDKGRFYTSRVVIVTSNFPGPNPRSARCVAALERRLHIRLNVTARDGAAFSAAAA FT LKPSEPLAATRYCKFSNPLTQFSMFNLAVDYKSIVLPNTPLSCFDELIDFILGSLRDRA FT SVNSLLSGMVRTDVARQGGNADAPAPSAAPLPSVLPSVPSQDPFVRAVNENRPVSFLSK FT IWSWRAPIFAASSFLSLIAATLTIVRCLRDLRSTQGAYSGTPVPKPRKKDLPKQPVYSG FT PVRRQGFDPAVMKIMGNVDSFVTLSGSKPIWTMSCLWIGGRNLIAPSHAFVSDDYEITH FT IRVGSRTLDVSRVTRVDDGELSLISVPDGPEHKSLIRYIRSASPKSGILASKFSDTPVF FT VSFWNGKPHSTPLPGVVDEKDSFTYRCSSFQGLCGSPMIATDPGGLGILGIHVAGVAGY FT NGFSARLTPERVQAFLSNLATPQSVLHFHPPMGPPAHVSRRSRLHPSPAFGAFPITKEP FT AALSRKDPRLPEGTDLDAITLAKHDKGDIATPWPCMEEAADWYFSQLPDSLPVLSQEDA FT IRGLDHMDAIDLSQSPGYPWTTQGRSRRSLFDEDGNPVPELQKAIDSVWDGGSYIYQSF FT LKDELRPTAKARAGKTRIVEAAPIQAIVVGRRLLGSLINHLQGNPLQYGSAVGCNPDIH FT WTQIFHSLTPFSNVWSIDYSCFDATIPSVLLSAIASRIASRSDQPGRVLDYLSYTTTSY FT HVYDSLWYTMVGGNPSGCVGTSILNTIANNIAIISAMMYCNKFDPRDPPVLYCYGDDLI FT WGSNQDFHPRELQAFYQKFTNFVVTPADKASDFPDSSSIYDITFLKRYFVPDDIHPHLI FT HPVMDEATLTNSIMWLRGGEFEEVLRSLETLAFHSGPNNYSTWCEKIKAKIRENGCDAT FT FTPYSVLQRGWVSTCMTGPYPLTG" XX SQ Sequence 7989 BP; 1420 A; 2876 C; 1652 G; 2040 T; 1 other; tttcgaccgc cttatggcag gcgggcttgt ggacggcttc ggcccaccca cagcaagaat 60 gccatcatct gtcctcaccc ccatttctcc cctccttccc ctgcaaccat tacgcttact 120 cgcatgtgca ttgagtggtg cacgtgttga acaaacagct acactcacgt gggggcgggt 180 tttcccgccc ttcggcctct cgcgaggccc acccttcccc ttcctcccat aactacagtg 240 ctttggtagg taagcatcct gatcccccgc ggaagctgct cgcgtggcaa ctgtggggac 300 ccagacaggt tatcaaaggc acccggtctt tccgcctcca ggagtatccc tgctagtgaa 360 ttctagtggg gctctgcttg gtgccaacct cccccaaatg cgcgctgcgg gagtgctctt 420 ccccaactca ccctagtatc ctctcatgtg tgtgcttggt cagcatatct gagacgatgt 480 tccgctgtcc cagaccagtc cagcaatgga cgggccagtg tgcgtagtcg tcttccggct 540 tgtccggcgc atgtttggtg aaccggtggg gtaaggttgg tgtgcccaac gcccgtactt 600 tggtgacaac tcaagaccac ccaggaatgc cagggaggta ccccgcctca cggcgggatc 660 tgaccctggg ctaattgtct acggtggttc ttcttgcttc catttctttc ttctgttcat 720 gatggagggc tctaacggat tttcgagttc gttggctggc ctttcctcat cacgctcttc 780 acttcgcctc ctcactcatc ttctttccct cccccccccg aatcgcgacg cccgccgcca 840 ctctggctgg taccgctccc cccccaccct ccccgtcaat gtctacctca atgaacaatt 900 tgacaatctt tgcctggcgg ctttgcgcta cccaggctgc aaattatacc cctctgttta 960 cactctattt ccagatgtct cacccttcaa gatcccccaa tccatccccg cctttgccca 1020 ccttgtccag cgacaggggt tgcgacggca aggcaacccc accaccaaca tctatggcaa 1080 tggcaacgaa gtcacgaccg acgtcggtgc caatgggatg tctcttccca ttgccgtagg 1140 tgatatgcct accgcctctt cctctgaagc ccctcttggt tccaacaaag gtggctcttc 1200 cacctctcca aaatccacat ccaacggcaa cgttgttcgc ggatcccgct actccaagtg 1260 gtgggagccc gcggccgcac gcgccttgga tcgtgctctt gaccatgctg ttgacgcgac 1320 tgacgcagtt gctggcgccg cctccaaggg catcaaggct ggagccacca agctctccaa 1380 caagcttgct ggctctcaaa ccacagccct tcttgccctc cccggcaaca ttgccggcgg 1440 tgctccttct gcgacggtca acgccaacaa cacttctatc tcctctcaag ctcttttacc 1500 ctccgtcaac ccttaccctt ctactcctgc tgtctcactc cccaaccccg acgcccccac 1560 tcaagtcggc cctgctgctg accgacagtg gctcgtcgac accatccctt ggtctgagac 1620 aaccccaccc cttactgtct tctccggacc caaggccctt acccctggta cctaccctcc 1680 cactatagaa cccaacactg gtgtctaccc tctaccagcg gcactttgtg tttcccatcc 1740 tgaatctgtc ttcaccactg cctacaacgc tcatgcctac ttcaattgtg gctttgacgt 1800 cacagtcgtc gtgaacgcct cccagttcca cggcggctcg ctgattgtct tggccatggc 1860 tgaaggtcta ggcgacatca ccccagctga ctcttccact tggttcaatt tcccccacgc 1920 aatcatcaat ctggctaatt ctaattctgc taccctcaaa cttccttaca ttggagtcac 1980 tccaaacacc tccactgaag gacttcacaa ctattggacc attctctttg cccctctgac 2040 tcctcttgct gtcccgaccg gctcccccac ctctgtcaaa gtctccctct ttgtctctcc 2100 cattgactca gctttctatg gcctcagatt ccccatcccc ttcccaacgc cccagcactg 2160 gaagacacgt gctgtccctg gtgccggctc ctacggctcg gtcgtggctg gccaggaaat 2220 ccccctggtt ggctatgccc ccgctgctcc cccccgcgat tacctccccg ggcgcgtgcg 2280 caattggctc gagtacgctg cccgccactc ttgggagagg aacctaccct ggaccgctgc 2340 cgacgaagtt ggcgaccagc tagtttccta tcccatccaa ccggagactc tcgcaaacac 2400 ccaaaccaac acagcttttg tcctgtccct cttctcccaa tggcgtggct ctctacagat 2460 ctctctcatc ttcactggtc ctgctcagtg ctacggccgc cttcttcttg cttacacccc 2520 tccctccgcc aatcctccca ccaccatcga ggaagccaac aacggcacct acgatgtctg 2580 ggatgtgaat ggcgactcca cctacacttt caccataccc ttctgttcac aggcctactg 2640 gaagactgtc gacatcggca cgtcgtctgg tttggtctca aacaatgggt acttcactat 2700 ctttgtcatg aaccctcttg tcactcctgg cccctccccc ccttctgcca ctgttgctgc 2760 cttcctccac gtcgcggatg attttgacgt ccgcctccca cagtgtcctg cccttggctt 2820 ccagtcggga gctgatggcg cagaagtcca acctgccccc accagtgacc tctctgatgg 2880 taaccccacc actgaccccg ctcctcgtga caactttgac taccctcacc accctgttga 2940 tccttccact gacctagctt tctacttctc ccagtaccgc tggttcggcc tcaatgaaga 3000 tctcactcca ttgaacgtca ccggtggtct gttctatcac gtctccctca accccgtcaa 3060 cttccagcaa aactctctcc tcagtgttct tggtgctttc acttacgtgt atgctaacct 3120 ttccctcaac atcaacgtct ctgctcctct tcaagcttgc accttctaca tcttttatgc 3180 ccctcccggt gcatctgtcc cttctacgca gacccttgca gaactctctt tcttcactca 3240 tactgccacc cctctcaact tagctgctcc aactaacatc actgtctcta tcccttatgc 3300 ctctccccag tctgttctct gcacgtcttt tggtggcttc ggcctccaga acggcggaga 3360 cccaggcaac ctccactcca acacatgggg aaccctcatt ctctatgttg acctccccca 3420 aagcgatagt gtctcagtct ctgcttacat ctctttccgc gacttcgaag cctacgtccc 3480 tcggcaaacc cctggtgtcg gtcccatccc cacgagcacc tccatcgttc gtgtcgcccg 3540 gcccactccc aaaccccgca cggtccgccg tcaaggtggt actcttgcag acctcatcct 3600 tacccccgag agtcgttgct tcattgttgc acatactact gccccctact actccatcct 3660 tctwgtcaac cccgatgagg agtatgccat cagcatgttc acacatggtg acgagtcaat 3720 ccttcgttac tcgtcacgtg gtggcactcg cctcgccccc accgccccag ccttctttct 3780 ctgtgctgct gcgtctgttg acacaatact cccttacccc atctctcaat cacacctctg 3840 gctctctgac ttgactggca tccctctccg cgcagtcccc cccctcaccc tcttcctctc 3900 cgcgggagcc gccctgtgtg ccggcgcaca aacactgata gccgtcgcac agggtggttc 3960 cgccccggac acccccccca cccccaaccg cgcccttttc cgccgccagg gccttggtga 4020 cctcccggat gcggccaaag gcctttccgc cgcactcgag aacgttgcca aggttgctgg 4080 tgatgctgac attgccacct cctcccaagc cattgcttct tccatcaact ctctttccaa 4140 ctccattgat ggtgctacta ccttcatgca aaacttcttc tctggccttg ccccgaagaa 4200 ccccacctct cctctccaac acctctttgc caagctcatc aaatgggtga ccaaaatcat 4260 cggttcactc atcatcatct gcaacaaccc caccccctca gcactcattg gtgtttccct 4320 catgctctgc ggtgacctcg ccgaggacat cacggagttc ttctccaatc ttgggaatcc 4380 tcttgctgct gtcttctatc gctgtgctag agctcttggc ctctccccca ccccgcaatc 4440 tgctgcccag gccgccggtg gacgtcaggg tgttcgtgat tacaacgaca tcatgagcgc 4500 tctacgaaac accgactggt tcttcgagaa gattatgtcc cacatcaaga atcttctcga 4560 gtggcttggg gtcctcgtca aagatgaccc caggaccaaa ctcaactcgc agcatgagaa 4620 aattctggaa ctctacactg actctgttac tgcttcttca actcccccct ctgagctttc 4680 tgcggacgcc attcggtcca acctggacct ggccaagcaa cttctcactc tctcgcatgc 4740 tgccaactct gtcacccaca tccagttgtg cacacgcgct atcaccaact actctacagc 4800 tctctctgcc atctcccttg tcggtacacc tggcacgcgg ccagagccac tggtcgtgta 4860 cctgtacgga ccccctggga ctggcaaatc cctcctcgct tctctcctcg cttctactct 4920 tgctcaggcc ctctctggtg accccaacaa ttactactca ccttcttccc ctgactgcaa 4980 attctacgat ggttactctg gccagcctgt ccactacatc gacgacatcg ggcaagaccc 5040 cgatggcgcc gattgggctg actttgtgaa catcgtttcc tcagccccct tcatcgtccc 5100 catggctgac gttaacgaca agggacggtt ctacacctcc cgcgttgtga tcgtcacctc 5160 gaacttccct ggccccaacc cccgctctgc tcgctgcgtg gctgcgctgg aacgccgcct 5220 gcacattcgc ctgaatgtga cggcgcgtga cggtgctgcc ttctcagcgg cagctgctct 5280 caagccctct gaacctctcg ctgctactcg ctactgcaag ttctccaacc ccctcaccca 5340 gttttccatg ttcaatctgg ctgttgatta caaatcaatt gtcctcccca acaccccact 5400 ctcctgcttc gatgaactga ttgactttat cttgggctct cttcgcgatc gggcctcggt 5460 gaactccctt ctctctggca tggtgcgcac cgacgtagca cgccagggcg ggaacgctga 5520 cgcccccgct ccctctgcag ctcctctccc ctctgtcctc ccctctgttc cttcccagga 5580 ccctttcgtc cgtgcggtga acgagaaccg cccggtctct ttcctctcca agatctggtc 5640 gtggcgtgct cctatcttcg ccgcctcctc tttcctttcc ctcattgctg caaccctcac 5700 cattgtccgc tgtctccgtg acctgcggtc cacccagggt gcgtacagtg ggactcctgt 5760 tccgaaacca cggaaaaagg atctccctaa acaacctgtg tactctgggc cagtccgccg 5820 tcagggtttc gaccctgccg tcatgaagat catgggcaat gttgactctt ttgtgactct 5880 ttcgggttct aaacccatct ggactatgtc ttgcctctgg attggcggtc gcaatctgat 5940 tgctccttcc cacgcattcg tctccgatga ttatgagatc acccacatcc gcgttggatc 6000 gcgcacgctt gacgtgtcgc gtgttacgcg ggtggatgac ggtgagttat ctctgatctc 6060 ggtgccggat gggccggagc ataagagcct gatccgctac atccgctccg cctctcctaa 6120 atctggtatc ctagcttcca aattttctga cacccctgtc tttgtctctt tctggaacgg 6180 caagccccac tccacccccc tccctggggt cgtagacgag aaagactcgt tcacgtaccg 6240 ctgctcttcc ttccaaggct tgtgcggttc gccgatgatt gccactgatc ctggcggcct 6300 gggtattctc ggtatccatg tcgccggggt ggctggctac aacggcttct ccgcgcgcct 6360 tacccctgaa cgtgtccaag ctttcctctc taacctggcc acacctcagt ctgttcttca 6420 tttccaccca cccatgggcc cgcctgcgca cgtctctcgt cgcagtcggc tccatccctc 6480 ccctgccttt ggcgccttcc ccatcaccaa agaaccagca gccctttcta ggaaggaccc 6540 tcgcctcccc gagggcaccg acctggatgc tatcaccctc gccaagcacg acaagggcga 6600 catcgcgacg ccctggcctt gcatggaaga ggcggctgac tggtacttct cccagctccc 6660 tgacagcctc ccagtcctct ctcaggaaga tgccattcgt ggtctcgacc acatggatgc 6720 catcgacctc tctcagtctc ctggctatcc ttggacaaca cagggccggt cccgccggtc 6780 tctgtttgac gaggatggca accctgtccc tgagcttcaa aaagccatcg attccgtctg 6840 ggacggtggc tcctacatct atcaatcttt cctcaaggat gagttgcgcc ctacggcgaa 6900 agccagagct ggaaaaaccc ggattgtgga ggcggccccg atacaagcaa ttgtggtcgg 6960 gcgtcgtctt cttggttctc tcatcaacca cctccagggt aaccctctcc agtatggcag 7020 cgccgttgga tgcaaccctg acatccactg gactcaaatc ttccactctc tcactccctt 7080 ctctaatgtc tggtctattg attactcttg ctttgacgcc accatcccct ctgtcctcct 7140 ctctgctatt gcctctcgca ttgcttctcg ctctgaccaa cctggccgtg ttctggacta 7200 cctctcttac actactactt cttaccatgt ctatgactcc ctgtggtata ccatggtcgg 7260 tggtaacccc tccgggtgtg ttgggacttc catcctcaac acgattgcaa acaacatcgc 7320 gatcatctcc gcgatgatgt attgcaacaa atttgacccg cgggatcctc cggtcttgta 7380 ctgctacggg gatgacttga tatggggctc caatcaagac tttcaccctc gtgaactcca 7440 ggctttctat cagaaattca ctaactttgt tgtcaccccc gctgacaagg cttctgactt 7500 tcctgattct tcctccatct atgacattac ttttcttaaa cgctactttg tccctgatga 7560 tatccacccc cacctcatcc atcctgtgat ggatgaggca accctcacca actcaatcat 7620 gtggttgcgt ggcggggagt ttgaggaggt gttgcggtca ctcgagactc tggcctttca 7680 ctccggaccg aataactatt cgacctggtg tgagaagatc aaggctaaga ttcgagagaa 7740 cggctgcgac gccaccttca ctccctactc cgtcctccaa cgtggttggg tttccacctg 7800 catgactgga ccctaccccc tcaccgggta gtccccccct gaaaccctcg ccccaggtcc 7860 agtttaccct cccccacccc gtctctccct ccctttgtcc tgcatggtga tataaagacc 7920 ctttgtggac cctaagccat gtagttgctg ctcccccttt cctgttgtga atattggttt 7980 ctgtttcat 7989 //