ID GQ179647; SV 1; linear; genomic RNA; STD; VRL; 6607 BP. XX AC GQ179647; XX DT 17-SEP-2009 (Rel. 102, Created) DT 25-DEC-2009 (Rel. 103, Last updated, Version 2) XX DE Alternanthera mosaic virus isolate SP 4-7, complete genome. XX KW . XX OS Alternanthera mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6607 RX DOI; 10.1099/vir.0.014977-0. RX PUBMED; 20019006. RA Lim H.S., Vaira A.M., Reinsel M.D., Bae H., Bailey B.A., Domier L.L., RA Hammond J.; RT "Pathogenicity of Alternanthera mosaic virus is affected by determinants in RT RNA-dependent RNA polymerase and by reduced efficacy of silencing RT suppression in a movement-competent TGB1"; RL J. Gen. Virol. 91(Pt 1):277-287(2010). XX RN [2] RP 1-6607 RA Hammond J., Lim H.-S., Reinsel M.D.; RT ; RL Submitted (19-MAY-2009) to the INSDC. RL Floral and Nursery Plants Research Unit, National Arboretum, US Department RL of Agriculture, 10300 Baltimore Avenue, Building 010A, Beltsville, MD RL 20705, USA XX DR MD5; 3491812ac93b85aaca7d24998f0105ae. DR EuropePMC; PMC3560364; 23386854. XX FH Key Location/Qualifiers FH FT source 1..6607 FT /organism="Alternanthera mosaic virus" FT /host="Phlox stolonifera cv. Sherwood Purple" FT /lab_host="Nicotiana benthamiana" FT /isolate="SP 4-7" FT /mol_type="genomic RNA" FT /country="USA:Maryland" FT /collection_date="2007" FT /db_xref="taxon:85454" FT 5'UTR 1..94 FT CDS 95..4720 FT /codon_start=1 FT /product="replicase" FT /db_xref="GOA:C9D749" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:C9D749" FT /protein_id="ACS28233.1" FT /translation="MAHFRSVLDQMNDPSLRAVIQEEAYREIKKTIAETKQYNPYAQDP FT AAADSLEKLGIESNPFSVRAHTHAAAKSIELDMYKITGYSLPKENPITFLFMKRSKLQY FT FHRGPQHGDLFLNAWIEPKDVTRYNLEDLFKPSITPEIQTRVAFIGDTLHFLPLGAIRE FT IFTSSQKLQTLYATMVLPPEAMHRMHSIHPSIYELEFHERNFIYKPGGHAGASYCHEYS FT QLQWLKVGKFEWCDKRYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVT FT LPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKE FT LALIVNYYLLISKLDSVTCFDNVLTGGALKKLFKPIVAWWSTFKGALFGKEEFEQLMEA FT LEWVDVSLSYKVETYSQANPNNQPKVMFGYEWLSTETGAPGTEEDVAPENPQEDEDPHE FT KYIQALQTLTKALDPENAPPQTEPAQSSSINDPQQEEHPRSPHDLHTDESPSCSGSLNS FT YACHCPCGIELKIFSAEFPPIPPLSHGDRLKNREAFFFSRDGTPYSYTGGSHVSRGWPA FT FLDQILATAELVRPIPHFNQCLIQKYQRGASIPFHSDDEPCYDVDHQVLTINLTGEAEF FT KTSCKAGSGSCTLAENQFHLSPPGFQKTHKHSVVSLSAGRVSLTFRSTVKQGVTSEEGD FT YVEPDNLPWKAWLEKLRNLGFRGTQLQYDPNGALISPIESIKSLPKCSPEKVNPSLLKM FT LNDQARAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLAIS FT VIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKALL FT APIKPTVIFDDYGKLPAGYIEAFSCYMSSVELLVLTGDSKQSVHHESNENAMSSLIEPF FT TLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKE FT AFSEMGHKVSTYAGCQGLTAPRVQILLSEETSMCSREVIYTALSRAVHSIHFVNCGPNN FT QAFWAKLESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPKTHIPVDSAMPIYEDLLD FT QMPEKHEREIFSERHGHSNCVQTEDTFVQMFSHQQAKDETLLWATIEARLVISNPKANW FT QEFMEKRPIGDVLFGFYREAMGLPTEPIAFEPQLWESCIHEVQRTYLAKPINMLKNGQA FT RQSPDYDPNMISLFLKSQWVKKMEKLGALKIKPGQTIASFHQATVMLFGTMARYMRRMR FT EIFQPKNIAINCEMTPEDLTDWAVGSAGQWKFAGPSLANDFTAFDQSQDGAMLQFEVLK FT AKHHSIPEDVLDAYLHIKTNSKIFLGTLTIMRLTGEGPTFDANTECNIAFTHAKFQIPK FT GTAQLYAGDDSAIDGNPPVRESFRLVEQKLKLRSKPAIAMQEKGDWAEFCGYRITPKGF FT IKDPKKLHASLVLEKKRGNLKNVLRSYELDLALAYQHRDELHELLSEEELRLHYDTVRT FT LVKSGGGEVLKTFLPKDESLY" FT CDS 4704..5402 FT /codon_start=1 FT /product="TGB1" FT /db_xref="GOA:C9D750" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:C9D750" FT /protein_id="ACS28234.1" FT /translation="MNHFTNLLIEEGYVRTNEILSDTLVVHAVAGAGKSTLIRKFIHQH FT PQARAYTHGVPDPPNLEGRFIQAFKNPDPNHFNILDEYCAEPLSGSWNVLIADPLQHRS FT QALRPHYIKRESHRLGVATCELLTRVGLPVLSNKTEDQVDYQGIFEGPLFGTVIALDST FT VRALLVKHGIPPLCPAEVLGSEFEQTTVVSEVPLSQVKFKHALYIALTRHKKSLHVRAP FT PLPDTPRRLL" FT CDS 5356..5688 FT /codon_start=1 FT /product="TGB2" FT /db_xref="GOA:Q52Z63" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q52Z63" FT /protein_id="ACS28235.1" FT /translation="MSGLPHSLTPPADYSKPVLAAAVGVSLALVINSFLVYRLPSPGDN FT IHQLPFGGSYRDGTKSIHYNSPRAQSQISGASPFLIILILSALIYALSCRGGHHRARLH FT RCPCCS" FT CDS 5624..5815 FT /codon_start=1 FT /product="TGB3" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q52Z62" FT /protein_id="ACS28236.1" FT /translation="MPYLVEAAITVLACIGVLAALRPGSHPCTILLTGHSATISGNCGP FT VAPETIRALGDYLTGLRF" FT CDS 5858..6481 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q52Z61" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q52Z61" FT /protein_id="ACS28237.1" FT /translation="MSTPFPQVTQEQMNAFTPHTTSNLLPSPEQLTTIANLLVAAKVPA FT ASTTTIALELVNFCYDNGSSTYTAVVGPSSLAEVSLSQVANIVKASGTSLRKFCRFFAP FT IIWNLRTDKTPPANWEANGFKPTEKFAAFDFFDGVENPAAMQPPGGLVRTPSQAERIAN FT ATNKQVNLFQAAAQDNNFASNSAFITKGQLSSNSPTIQYLPPPE" XX SQ Sequence 6607 BP; 1786 A; 1889 C; 1483 G; 1449 T; 0 other; gaaaagtaaa gcaaagcaaa gcaaagcaaa gaaactgaaa gtctatattt gcccttcgag 60 gagatcgatt acccatcccg gctagatcaa cagtatggca cactttcgtt ctgttcttga 120 ccaaatgaac gatcccagcc tccgggcggt cattcaagaa gaagcttacc gcgaaattaa 180 aaaaaccatc gcggaaacca aacagtacaa tccttacgcc caggatccag cggcggctga 240 ctcattagag aaattaggaa tagaatctaa ccccttctca gtccgcgccc atacacacgc 300 ggccgcgaag tctatagaat tagacatgta caaaatcacg ggttactccc tcccaaagga 360 gaatccaatt acttttcttt tcatgaagag gtccaaactt caatacttcc acagaggacc 420 acagcatgga gacttgttcc ttaacgcttg gattgagcca aaggacgtca ccaggtacaa 480 cttagaagac ctcttcaaac cttccatcac cccagaaatc caaactagag tggcattcat 540 tggagacaca ctacacttcc ttcccctagg ggctatcaga gagatattta caagctccca 600 aaaacttcaa actctctatg caacaatggt actgcccccc gaagccatgc acagaatgca 660 ctcaattcac cccagcattt acgagctaga attccatgaa agaaatttca tatacaagcc 720 gggaggacat gcaggggcgt cctattgcca cgagtactca caacttcagt ggctcaaggt 780 cgggaaattc gagtggtgcg acaaaagata tcagaagcac tacgtgacat cacagattct 840 ggaaaccaag ggtgcaaatc accttttcgt attccagcgc ggcaatttcg ccacccctac 900 ctaccgaact ttcggggtag agacaaaatt tgtcacactc ccacccatat tcctcccaaa 960 gaaatacaac gcgcggtacc caataaagaa aactgtggca cagcaactat ttctctacat 1020 caagtcggtg aaaacagtca cggagagaga catttgggcc aaagtgagac agatcataaa 1080 gaccgctgag ctccaaagct actcggcgaa agaactcgca ctcattgtca actactactt 1140 gctcatctcc aagctggact ctgtcacctg ttttgacaat gtgcttacag ggggtgcgct 1200 caagaagctc ttcaaaccca ttgtggcttg gtggtccacc ttcaaaggcg cgcttttcgg 1260 gaaagaggag ttcgaacaac ttatggaagc gctcgagtgg gttgacgtgt cactgtccta 1320 caaagtggag acatacagcc aagctaaccc aaacaatcaa cccaaggtga tgttcgggta 1380 tgagtggctc agcacagaaa cgggagctcc aggaacagag gaggacgtcg cccccgagaa 1440 tccacaagag gacgaggatc cacatgaaaa gtacatccag gccctccaaa cactaacgaa 1500 ggccctcgat ccagagaacg ccccaccaca aacagaacca gctcaaagct ccagcatcaa 1560 tgatccacaa caggaggagc atccccgctc accccacgac ctccacactg atgaatcccc 1620 aagctgctca ggaagcttga attcttatgc ttgccactgc ccatgcggca ttgagctaaa 1680 aattttttca gccgagtttc cacccattcc cccactatcg cacggtgatc ggctaaaaaa 1740 tagggaagcc ttcttcttct caagagatgg cactccctac agctacactg ggggttccca 1800 cgtatccaga ggatggccgg ctttcctcga ccagatccta gccactgctg agttggtgag 1860 gcctatcccc catttcaacc agtgcctcat ccaaaaatac caaaggggcg cctccatccc 1920 cttccacagc gacgatgagc catgctacga tgtggaccac caagtgctca caatcaacct 1980 cactggcgaa gcggaattca aaactagctg caaagccggt tcagggagtt gcacgctggc 2040 agagaaccag tttcacctgt cccccccagg tttccaaaag acgcataagc acagtgtggt 2100 ctcactcagc gcggggcgag tctccctcac atttcgctct accgtcaagc agggtgttac 2160 ctctgaagag ggcgattatg tagagcccga caatctgcca tggaaggcct ggctcgagaa 2220 attgagaaac ctgggattca ggggcacaca gctgcaatat gatccaaatg gagccttgat 2280 ctcaccaatc gaaagcatca agtcacttcc gaagtgctcc ccggaaaagg tcaacccctc 2340 cctcctcaag atgctgaatg atcaggctcg tgcaccaact ccattctcgc cgagccccat 2400 cagagcaaaa gcctactcct cagacgttaa gaactcccga attggcgcat tactccgaca 2460 gcagggcaag gactggggcc accgtttcga ttcactcgtg gagaatgggc agagacagct 2520 agccatcagc gtgatccatg gggctggcgg ctctgggaaa tcgagggcgt tgcaaatgta 2580 cttaaaagac aatccagatg ctgatgtcac gatagtgttg ccaactaacg agcttaggct 2640 cgactggttg aagaaattac ccaccttccc agctgaccag atcaaaacct tcgagaaggc 2700 cttgctggcc cccataaaac ccacagtcat cttcgatgat tacggcaaac tgccggccgg 2760 gtacattgaa gccttctcgt gctacatgtc atcggttgaa cttctggtgc tcaccggtga 2820 ttctaagcaa agtgtgcacc atgagtctaa cgagaatgcg atgagcagcc tcattgaacc 2880 cttcaccctg gaagctgaca agtactcacg ctactatatt aatgccacac acagaaacaa 2940 gcgtgatttg gctaacaaac taggggtcta ctcggaggtc acgggaataa catccatcac 3000 ccaaggcaac caccctgtgc cgggacttca cctgctcgtc ccctcactct acaagaagga 3060 agctttcagc gagatgggcc acaaggtttc cacttatgcg ggctgtcagg gtctcacagc 3120 cccacgcgtg caaattctgc tctcagaaga gactagcatg tgttcccgcg aagtcattta 3180 caccgccctc tcccgagccg ttcactccat tcactttgtc aactgcggcc caaacaatca 3240 ggctttctgg gccaagctgg agagcacacc ttacctgaaa gctttcctct ccacgctccg 3300 agaagacgcg gcacctgtcg tgaaaccgaa agaggaagca ccagctccag ttgatccccc 3360 aaagacccac atcccagttg actcagccat gccaatttat gaggacttac tggatcagat 3420 gccggaaaag catgagaggg agatcttttc agaaaggcat gggcacagca attgcgtgca 3480 aacggaggat acctttgtgc aaatgttcag tcaccagcag gctaaggacg aaacccttct 3540 ctgggctacc atcgaggcga gactggtcat ttccaacccc aaggccaatt ggcaagaatt 3600 catggagaaa agaccgattg gagatgtgct ctttggtttc tacagagaag cgatggggct 3660 gcccactgaa cctattgcct ttgaaccaca gctttgggag tcttgcatcc atgaggtcca 3720 gcgtacctac ttggcaaagc ccatcaacat gctgaagaat ggacaggctc ggcaatcccc 3780 cgattatgat ccaaacatga tatctctctt tctgaagtcc cagtgggtga agaaaatgga 3840 gaagttgggc gccctaaaga tcaagcccgg acaaactatt gcctccttcc accaggccac 3900 tgtcatgctg ttcggcacga tggctaggta catgaggaga atgcgggaaa ttttccagcc 3960 taagaacatt gccatcaact gcgagatgac cccagaagat ctcacagatt gggccgtggg 4020 ttctgccggc cagtggaaat tcgccggccc ttctttagcc aatgacttca cagcattcga 4080 tcagtcacaa gatggggcga tgcttcagtt tgaggtcctc aaagccaaac accacagcat 4140 tccagaggat gtcttggacg cttacctaca catcaaaaca aactcgaaga tcttcttggg 4200 tacattgacc attatgagac tcacgggtga aggccccact ttcgatgcaa acactgagtg 4260 caacatcgct ttcacccatg caaaatttca gattccaaag ggtacagccc agctttacgc 4320 gggggatgac tcggcaattg atggcaaccc cccagtgaga gagagtttca gattggttga 4380 gcagaaattg aagctgaggt caaaaccggc gatcgcgatg caggaaaaag gagactgggc 4440 agaattctgt ggatacagga ttacgcccaa aggtttcatc aaggatccaa agaaacttca 4500 cgcgagtctg gtgcttgaaa agaagagagg taatttgaag aatgtgctga ggtcctatga 4560 gcttgacctg gccttggcat atcagcaccg ggatgaactt cacgaattac tctctgagga 4620 ggagctgcgt cttcactacg acacggttcg tacgctagtt aagtcaggtg gaggagaggt 4680 tttgaaaact tttcttccca aagatgaatc actttactaa cctcctcatt gaagagggtt 4740 acgtccggac gaacgaaatc ctctcagata ctctagtcgt ccatgctgta gctggcgctg 4800 gcaagtccac cctcatccgc aaattcatcc atcagcatcc acaggcccgc gcgtacaccc 4860 acggagtccc tgacccccca aatcttgaag gccgattcat tcaggctttt aagaaccctg 4920 acccaaacca cttcaacatc cttgacgagt attgtgcaga acctctaagc ggcagttgga 4980 acgtgctcat cgccgacccc ctgcaacata gatctcaagc tcttcgaccc cactacatca 5040 aaagagagtc ccacaggcta ggagtagcca cgtgtgaact tctcaccaga gtggggctcc 5100 cagttttgtc caacaagact gaggatcaag ttgattacca gggcattttc gaagggcccc 5160 ttttcggcac cgtgattgct ctggactcca ctgtcagagc cctcctcgta aagcacggaa 5220 ttccaccact ctgcccagct gaggtcctcg ggtctgagtt tgagcaaacg acagtagtct 5280 cggaggttcc gcttagccag gtcaagttca agcacgctct gtacatcgct ctcacccgcc 5340 acaagaagtc tctccatgtc cgggctcccc cactccctga caccccccgc cgattactct 5400 aagccagtgc ttgcagcagc agtaggagtt agtttagctt tagtaataaa ctctttcttg 5460 gtctataggc ttccctcgcc cggggacaat attcatcaac tgccctttgg aggttcctac 5520 cgggacggaa ctaagagcat ccactacaat tcgcctaggg cccagagtca gatctcaggt 5580 gcgtcaccgt tcctgataat cctgatactc tcagccctca tctatgccct atcttgtaga 5640 ggcggccatc accgtgctcg cttgcatagg tgtccttgct gctcttaggc cagggtccca 5700 tccttgcacc attctgctaa ctggacactc tgcgaccatt agcggaaact gcggacctgt 5760 cgcaccagag accatcaggg ctcttggaga ctacttaacc gggcttaggt tttagcatta 5820 gtttgattat cctattgtca tcctagttga agtcatcatg tctacaccat ttcctcaagt 5880 cactcaggaa cagatgaacg ccttcactcc acataccaca tccaatctcc ttccatcacc 5940 ggagcagttg accaccattg ccaacctctt ggttgctgcc aaggtgcctg ccgcctcaac 6000 cacgaccatc gccctggagc ttgttaactt ctgttatgac aatggctcca gtacctacac 6060 agcggtggtg ggcccttctt cacttgcaga ggtctcactc tcccaggtcg ctaacatcgt 6120 caaagcctca ggcacctctc tccgcaaatt ctgcagattc tttgctccaa tcatctggaa 6180 cctcagaaca gacaagacgc ccccagccaa ctgggaagcc aatgggttca aaccgacaga 6240 gaagtttgca gccttcgatt tcttcgatgg agtggagaat ccggcggcca tgcagccacc 6300 aggagggttg gttaggactc ccagccaagc agaaaggatc gccaacgcta ctaacaagca 6360 ggtaaacctc tttcaggccg cggcacagga taataacttc gccagcaact ctgcattcat 6420 caccaagggc caattgtcct ccaactcacc aaccattcaa tacctcccac cacctgagtg 6480 atttctccac ccagtccaag cccgttgttt tcgcaatttt gttggggcta tcgagttttc 6540 aaaattgctt ccgcttctgt agacctaaat tacagcctag tgtgcggttt aatacctatt 6600 tacgcac 6607 //