ID FR772081; SV 1; circular; genomic DNA; STD; VRL; 2750 BP. XX AC FR772081; XX DT 10-JAN-2012 (Rel. 111, Created) DT 10-JAN-2012 (Rel. 111, Last updated, Version 1) XX DE Hollyhock yellow vein mosaic virus, complete genome, isolate DE [Pakistan:17-5:06] Lahore10 XX KW complete genome. XX OS Hollyhock yellow vein mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2750 RA Zia ur Rehman M.; RT ; RL Submitted (29-DEC-2010) to the INSDC. RL Zia ur Rehman M., University of the Punjab, School of Biological Sciences, RL Lab 10, SBS, University of the Punjab, Lahore54590, PAKISTAN. XX RN [2] RA Zia Ur Rehman M., Haider M.S.; RT "Begomoviruses infecting Hollyhock in Pakistan"; RL Unpublished. XX DR MD5; fa2a57c0c52187e621867c0d8027e081. DR EuropePMC; PMC5142593. XX FH Key Location/Qualifiers FH FT source 1..2750 FT /organism="Hollyhock yellow vein mosaic virus" FT /host="Alcea rosea" FT /isolate="[Pakistan:17-5:06] Lahore10" FT /mol_type="genomic DNA" FT /country="Pakistan:Lahore" FT /isolation_source="host leaves" FT /collected_by="Muhammad Zia Ur Rehman" FT /collection_date="2006" FT /clone="YA-7" FT /db_xref="taxon:944994" FT CDS 131..478 FT /gene="av2" FT /product="pre-coat protein" FT /db_xref="GOA:H1ZWN4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H1ZWN4" FT /protein_id="CBY88985.1" FT /translation="MWDPLLNEFPETVHGFRCMLAIKYLQQLSEEYSPDTVGYDLIRDL FT ISILRSRNYVEASCRYRHFYPRVEGASSTELRQPLCNPCSCPHCPRHKVSHLGEQAHVS FT EAQNVQDVQKP" FT CDS 291..1061 FT /gene="av1" FT /product="coat protein" FT /function="encapsidation" FT /db_xref="GOA:H1ZWN5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:H1ZWN5" FT /protein_id="CBY88986.1" FT /translation="MSKRPADIVISTPASKVRRRLNFDSPYATRAVAPTVRVTKSRIWA FT NRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHR FT VGKRFCVKSLYFVGKIWMDENIKTKNHTNTVLFWIVRDRRPSGTPNDFQQVFNVYDNEP FT STATVKNDQRNRFQVLRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENH FT TENALLLYMACTHASNPVYATLKVRSYFYDSVTN" FT CDS complement(1064..1468) FT /gene="ac3" FT /product="replication enhancer protein" FT /db_xref="GOA:H1ZWN6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H1ZWN6" FT /protein_id="CBY88987.1" FT /translation="MDLRTEEPITAAQAWSGAYIWEVPNPLYFKILSHEVCPYSSKMDI FT ITIRIQFNYNLRRALGVHKCFLTFRVWTTLHPPTGLFLRVFKTQVIKYLNNIGVISINS FT IIRAVDHVLYSKIEQTMYVDQVSEIKFDIY" FT CDS complement(1161..1613) FT /gene="ac2" FT /product="transcriptional activator protein" FT /db_xref="GOA:H1ZWN7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H1ZWN7" FT /protein_id="CBY88988.1" FT /translation="MRSSSPLKDHCTQVPIKVQHREAKKRNRRRRVDLECGCSYYLSIN FT CFNHGFTHRGTHHCSSSMEWRLYLGSTKSPLFQDPKPRGLSLLEQDGHNNNQDPIQLQP FT SESSGSAQVFSDLPGLDDLTPSDWSFLKGIQDPSHKVSQQYRSNLN" FT CDS complement(1510..2601) FT /gene="ac1" FT /product="replication associated protein" FT /db_xref="GOA:H1ZWN8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H1ZWN8" FT /protein_id="CBY88989.1" FT /translation="MAPPKQFQINAKNYFITYPTCSLTKEEALSQLQNLQTPVNKKYIR FT ICREFHENGEPHLHVLIQFEGKYKCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT AKDGDILDWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFH FT NLNANLDRIFQEPPAPYVSPFSSSSFDQVPEELEEWACVNVVDAAARPLRPQSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNTALKNWTDKNAIFVTLEGPL FT YSGSNQSTAQGSEETQQEEESRS" FT CDS complement(2142..2450) FT /gene="ac4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H1ZWN9" FT /protein_id="CBY88990.1" FT /translation="MKMGNLIFTCSSSSKANTSAKITDSSTSYPQPGQHISIRTFRELN FT PAPTSSPTSPRTGTFSTGENFRSMEDQQEEGNRQPTTLTPQHLTREVSRRLLESLRN" XX SQ Sequence 2750 BP; 704 A; 577 C; 622 G; 847 T; 0 other; accggatggc cgcgcgattt tttttgtggg cccctccact aactcttgtc tgccaatcaa 60 atgacgcgct caaagcttaa ataatttccc gcctattata agtacttctt cgacaagttt 120 cattttgaaa atgtgggatc cactgttaaa cgagttccct gagactgttc acgggtttcg 180 ttgcatgctt gcgattaaat atcttcaaca actgtctgaa gaatactctc ctgatacggt 240 aggttacgat ctaattcgcg atttaatttc tattttacgt tccaggaatt atgtcgaagc 300 gtcctgccga tatcgtcatt tctacccccg cgtcgaaggt gcgtcgtcga ctgaacttcg 360 acagccccta tgcaacccgt gcagttgccc ccactgtccg cgtcacaaag tctcgcattt 420 gggcgaacag gcccatgtat cggaagccca gaatgtacag gatgtacaga agccctgatg 480 ttcctaaggg ttgtgaaggc ccatgtaagg tgcagtcttt cgatgcgaaa aatgatattg 540 ggcatatggg taaggtaatt tgtctttctg atgttactag gggtattggg ctgacccatc 600 gagtagggaa acgtttttgc gttaagtcat tgtattttgt tggcaaaata tggatggacg 660 agaacatcaa gactaagaac catacaaaca ctgttttgtt ctggatcgtg agagacaggc 720 gtccttcagg aactcctaat gatttccagc aagttttcaa tgtttatgat aacgagcctt 780 ctacggctac tgtgaagaac gaccagcgta atcgttttca ggtgttgagg aggttccagg 840 caacagtcac aggtggtcaa tatgctgcta aggaacaagc tataatcagg aaattctatc 900 gtgttaacaa ttatgttgtc tataatcacc aggaagctgg gaagtatgag aatcacactg 960 agaatgcttt gttgttgtac atggcatgta cccatgcctc taaccccgtg tatgctactt 1020 tgaaagttag aagttatttc tatgattctg taaccaatta atattaataa atatcgaatt 1080 ttatttctga aacttggtct acatacatag tttgttctat tttactgtac aatacatgat 1140 ctactgctct aataatcgaa ttaattgaga ttactcctat attgttgaga tactttatga 1200 cttgggtctt gaataccctt aagaaaagac cagtcggagg gtgtaaggtc gtccaaaccc 1260 ggaaggtcag aaaacacttg tgcactccca gagctctccg aaggttgtag ttgaattgga 1320 tcctgattgt tattatgtcc atcttgctcg agtaaggaca gacctcgtgg cttaggatct 1380 tgaaataaag gggatttggt acttcccaga tataggcgcc actccatgct tgagctgcag 1440 tgatgggttc ctctgtgcgt aaatccatgg ttgaaacagt ttatagacag ataataagaa 1500 cacccgcatt caagatctac tctcctcctc ctgttgcgtt tcttcgcttc cctgtgctgt 1560 actttgattg gaacctgagt acagtggtcc ttcaagggtg acgaagatcg cattcttgtc 1620 tgtccagttc tttagtgcag tgttcttttc ctcgtccagg aattctttat aactgctgtt 1680 aggaccagga ttgcagagga agattgttgg tattccgcct ttaatttgaa ctggcttccc 1740 gtactttgtg ttggattgcc agtccctttg ggcccccatg aactctttaa agtgtttgag 1800 gaagtgcgga tcaacgtcat caatgacgtt ataccaagcg tcattactgt acacctttgg 1860 gcttagatct aaatgcccac ataaatagtt atgtgggcct aaagacctag cccacattgt 1920 tttcccagta cgactgtcgc cctcaattac tatactttga ggtctcaggg gccgcgcagc 1980 ggcgtcgaca acatttacac acgcccactc ttcaagttct tctggaactt gatcgaaaga 2040 agaagacgaa aaaggagaaa cataaggagc tggtggctcc tgaaagatcc tgtctagatt 2100 tgcatttaaa ttatgaaatt gtagtacaaa atctttagga gctagttcct taatgactct 2160 aagagcctcc gacttacttc ccgcgttaag tgctgcggcg taagcgtcgt tggctgtctg 2220 ttgccctcct cttgctgatc ttccatcgat ctgaaattct ccccagtcga gaatgtcccc 2280 gtccttggcg atgtaggact tgacgtcgga gctggattta gctccctgaa tgttcggatg 2340 gaaatgtgct gacctggttg gggatacgag gtcgaagaat ctgttatttt tgcacttgta 2400 tttgccttcg aactggatga gcacgtgaag atgaggttcc ccattttcat gaaactctct 2460 gcagattcta atgtattttt tgtttactgg ggtttgtagg ttttgtaatt gggaaagtgc 2520 ctcctcttta gtaagagagc atgtgggata agtgatgaaa taatttttgg catttatctg 2580 gaattgtttg ggaggagcca ttgacttggt caatcggtac ccagcactag tcttatggca 2640 attggggaac ggtaccctat atatagttgg gtaccaaatg gcaataattg taattacgta 2700 atcaaattca aaatcctcgc gctccaaaaa gcggccatcc gtataatatt 2750 //