ID   FR715042; SV 1; linear; genomic RNA; STD; VRL; 2037 BP.
XX
AC   FR715042;
XX
DT   06-APR-2011 (Rel. 108, Created)
DT   31-MAY-2011 (Rel. 109, Last updated, Version 2)
XX
DE   Alfalfa mosaic virus RNA3 segment complete sequence, genomic RNA, isolate
DE   Tec1
XX
KW   complete viral segment.
XX
OS   Alfalfa mosaic virus
OC   Viruses; Riboviria; Bromoviridae; Alfamovirus.
XX
RN   [1]
RP   1-2037
RA   Parrella G.;
RT   ;
RL   Submitted (14-OCT-2010) to the INSDC.
RL   Parrella G., Istituto per la Protezione delle Piante, CNR- National
RL   Research Council, Via Universita 133 - Portici (NA), 80055, ITALY.
XX
RN   [2]
RX   DOI; 10.1007/s00705-011-0941-z.
RX   PUBMED; 21327783.
RA   Parrella G., Acanfora N., Orilio A.F., Navas-Castillo J.;
RT   "Complete nucleotide sequence of a Spanish isolate of alfalfa mosaic virus:
RT   evidence for additional genetic variability";
RL   Arch. Virol. 156(6):1049-1052(2011).
XX
DR   MD5; 550388837d9edd9be922cfad4f1491a8.
DR   RFAM; RF00252; Alfamo_CPB.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2037
FT                   /organism="Alfalfa mosaic virus"
FT                   /segment="RNA3"
FT                   /host="Tecomaria capensis"
FT                   /isolate="Tec1"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain:Almeria"
FT                   /collected_by="Giuseppe Parrella"
FT                   /identified_by="Giuseppe Parrella"
FT                   /db_xref="taxon:12321"
FT   5'UTR           1..240
FT                   /gene="3a"
FT   CDS             241..1143
FT                   /gene="3a"
FT                   /product="30 kDa protein"
FT                   /function="movement protein, cell-to-cell movement"
FT                   /db_xref="GOA:F2QAH2"
FT                   /db_xref="InterPro:IPR002538"
FT                   /db_xref="UniProtKB/TrEMBL:F2QAH2"
FT                   /protein_id="CBX36146.1"
FT                   /translation="MENTKTNASGSGISSSSSFSVSYAEEMLLADEVSKINSMSILGPN
FT                   QLKLCTQLVLSNGAAPVVLSLVSKEKKSILNRMLPKIGQRMYVHHSAIYLLYMPNILKS
FT                   SSGSITLKLFNEATGELVDVDTDHDATQACIFAGRYPRSILAKDAAKGHDLKLVVHAVA
FT                   STNANSAVGVLYPIWEDELSRKQILERGADFLKFPIAETEPVRDLLNAGKLTDFVLDRT
FT                   RLGVGSKKDPNPVLLEPRAKIAGKAKTVFIPEGLGVPNTTISGISPMVRIDAGSPKGLG
FT                   VPKGFTYESFIKDEILPDH"
FT   misc_feature    1144..1192
FT                   /note="intergenic region"
FT   CDS             1193..1858
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /function="encapsidation, movement"
FT                   /db_xref="GOA:F2QAH3"
FT                   /db_xref="InterPro:IPR002681"
FT                   /db_xref="UniProtKB/TrEMBL:F2QAH3"
FT                   /protein_id="CBX36147.1"
FT                   /translation="MSSSQKKAGGKAGKPTKRSQNYAALRKAQLPKPPALKVPVAKPTN
FT                   TILPQTGCVWQSLGTPLSLSSSNGLGVRFLYSFLKDFAAPRILEEDLVFRMVFSITPSH
FT                   AGSFCLTDDVTTEDGRAVTHGNPMQEFPHGVFHANEKFGFELVFTAPTHAGMQNQNFKH
FT                   SYAVALCLDFDAQPEGSKNPSYRFNEVWVERKAFPRAGPLRSLITVGLLDEVDDLDRH"
FT   3'UTR           1859..2037
FT                   /gene="CP"
XX
SQ   Sequence 2037 BP; 541 A; 446 C; 458 G; 592 T; 0 other;
     gttttaatac cattttcaaa atattccaat tcaactcaat taacgctttt acagtgtaat        60
     tcgtactttt cgtaagtaag tttctgtaaa agcgtttctt gttttaattt ggtctaacac       120
     gtaattcgta ctcttcgtga gtaagttgtg ttagccatac ctatccttta aatttctgtc       180
     aatttaaaaa gaaaatcatt cccattcgcg taattcgtac tcttcgtgag taagttgcaa       240
     atggagaata caaaaacaaa tgcctcgggt tctggaatat cttcttcctc cagcttttca       300
     gtgtcttatg ctgaggaaat gttactagct gatgaagttt caaagataaa ctcaatgtcg       360
     atcctgggtc ccaatcagct aaagctctgc actcaattgg tgctgtctaa tggagcagca       420
     cctgtagttc taagccttgt gtcaaaggaa aagaaatcga ttttaaatcg tatgcttcca       480
     aaaattggac agaggatgta cgtccatcac tcggctattt acctccttta tatgccaaac       540
     atactaaaaa gttcttcagg gagcatcacc ttgaaacttt ttaatgaagc aactggagag       600
     ttagtggatg ttgacaccga ccatgatgct acccaagcat gtatttttgc tggacgttac       660
     ccccggagta ttctggcgaa agatgctgcg aaaggacacg acttaaaatt agtcgtccac       720
     gcggttgctt cgaccaatgc gaactctgcc gtcggtgttc tataccccat ctgggaagat       780
     gagttgagca gaaagcagat cctcgaaagg ggtgccgatt ttctaaagtt tccaattgct       840
     gagaccgaac cagtccgcga tctcttaaat gctggaaaat tgacggactt cgttcttgat       900
     aggacgaggt tgggcgtggg atcaaagaag gatcccaatc cggttcttct agaaccacga       960
     gctaagattg ccgggaaggc aaagacagtt tttattcccg aaggtctcgg tgttcctaat      1020
     accactataa gtggtatatc accgatggtg cgaatagatg ccggttctcc aaagggtctt      1080
     ggagttccga aagggtttac gtatgaaagt tttattaaag atgaaatttt acctgatcat      1140
     tgatcggtaa tgggccgttt ttatttttaa ttttctttca aatacttcca tcatgagttc      1200
     ttcacaaaag aaagctggtg ggaaagctgg taaacctact aaacgttctc agaactatgc      1260
     tgctctacgc aaagctcaac tgccgaagcc tccggcgttg aaagtcccgg ttgcaaaacc      1320
     gacgaatact atactgccac agacgggctg tgtgtggcaa agcctcggga cccctctgag      1380
     tctgagctct tcaaatgggc tcggtgtgag attcctttac agttttctga aggatttcgc      1440
     agcgccccgg atcctcgaag aggatctggt tttcaggatg gtgttttcta taacaccgtc      1500
     ccatgccggc tctttttgtc tcactgatga cgtgacgact gaggatggca gggccgttac      1560
     gcatggtaat cccatgcagg aatttcctca tggcgttttt cacgccaatg agaagttcgg      1620
     gtttgagctg gtcttcacag ctcccaccca tgcgggaatg caaaatcaaa atttcaagca      1680
     ttcctatgcc gtagccctct gtctggactt cgacgctcag cctgagggat ctaagaatcc      1740
     ctcataccga ttcaacgaag tttgggtcga gagaaaggct tttccgcgag cagggcccct      1800
     ccgcagttta ataactgtgg ggctgctcga cgaagttgac gatcttgatc gtcattgatg      1860
     taccccatta atttgggatg ctaaagtcat ttaatgctga cctccactgg gtggattaag      1920
     gtcaaggtat gaagtcctat tcgctcctga taggaacgac ttcatattgc ttatatatgt      1980
     gctggtgcac atatataaat gctcatgcaa aactgcatga atgcccctaa gggatgc         2037
//