ID FR715040; SV 1; linear; genomic RNA; STD; VRL; 3643 BP. XX AC FR715040; XX DT 06-APR-2011 (Rel. 108, Created) DT 31-MAY-2011 (Rel. 109, Last updated, Version 2) XX DE Alfalfa mosaic virus RNA1 segment complete sequence, genomic RNA, isolate DE Tec1 XX KW complete viral segment. XX OS Alfalfa mosaic virus OC Viruses; Riboviria; Bromoviridae; Alfamovirus. XX RN [1] RP 1-3643 RA Parrella G.; RT ; RL Submitted (14-OCT-2010) to the INSDC. RL Parrella G., Istituto per la Protezione delle Piante, CNR- National RL Research Council, Via Universita 133 - Portici (NA), 80055, ITALY. XX RN [2] RX DOI; 10.1007/s00705-011-0941-z. RX PUBMED; 21327783. RA Parrella G., Acanfora N., Orilio A.F., Navas-Castillo J.; RT "Complete nucleotide sequence of a Spanish isolate of alfalfa mosaic virus: RT evidence for additional genetic variability"; RL Arch. Virol. 156(6):1049-1052(2011). XX DR MD5; 74dcb11c1ae2be68ff48a184ea108ce3. DR RFAM; RF00196; AMV_RNA1_SL. DR RFAM; RF00252; Alfamo_CPB. XX FH Key Location/Qualifiers FH FT source 1..3643 FT /organism="Alfalfa mosaic virus" FT /segment="RNA1" FT /host="Tecomaria capensis" FT /isolate="Tec1" FT /mol_type="genomic RNA" FT /country="Spain:Almeria" FT /collected_by="Giuseppe Parrella" FT /identified_by="Giuseppe Parrella" FT /db_xref="taxon:12321" FT 5'UTR 1..55 FT /gene="1a" FT CDS 100..3480 FT /gene="1a" FT /product="126 kDa protein" FT /function="methyltransferase and helicase" FT /db_xref="GOA:F2QAH0" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:F2QAH0" FT /protein_id="CBX36144.1" FT /translation="MNADAQSTDSSLSMREPLSHASIQEMLRRVVEKQAADDTTAIGKV FT FSEAGRAYAQDALPSDKGEVLKISFSLDATQQNILRTNFPGRRIVFSNSSSSSHCFAAA FT HRLLETDFVYRCFGNTVDSIIDLGGNFVSHMKVKRHNVHCCCPILDARDGARLTERILS FT LKSYVRKHPEIVGEADYCMDTFQKCSRRADYAFAIHSTSDLDVGELACSLDQKGVMKFI FT CTMMVDADMLIHNEGEIPNFNVRWEIDRKNDLIHFDFIDEPNLGYSHRFSLLKHYLTYN FT AVDLGHAAYRIERKQDFGGVMVIDLTYSLGFVPKMPHSNGRSCAWYNRVKGQMVVHTVN FT EGYYHHSYQTAVRRKVLVDKKVLTRVTEVAFRQFRPNSDAHSAIQSIATMLSSSTNHTI FT IGGVTLISGKPLNPDDYIPVATTIYYRVRKLYNAIPEMLSLLDKGERLSTDAVLKGSEG FT PTWYSGPTFLSALDKVNVPGDFVAKALLSLPKRDLKSLFSRSVTSPSERTPVQDESPVR FT CTDGVFYPIRMLLKCLGSDKFESVTITDPRSNTETTVDLYQSFQKKIETVFSFILGKVD FT GPSPLISDPVYFQSLEDVYYAEWHQGNAIDASSYARTLLDNIRKQKEESLRAKAKEVED FT AQKLNRAILQVHAYLEAHPDGRKIEGLGLSSQFIAKIPELAIPTPKPLPEFEKNAETGE FT ILRINPHSDAILEAIDYLKSSSANSIITLRKLGDHCQWTTKGLDVVWAGDDKRRAFIPK FT KNTWVGPTARSYPLAKYERAMSKDGYVTLRWDGEVLDANCVRSLSQYEIVFVDQSCVFA FT SAERIIPSLEKALGLEAHFSVTIVDGVAGCGKTTNIKQLARLSGQDVDLILTSNRSSAD FT ELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGSNE FT VIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKFFYKNKKPVK FT TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQG FT KTFDNVYFCRLTRTSTSLTTGRDPINGPCHGLVALSRHKKTFKYFTIAHDSDDVIYNAC FT RDAGNTDDSILARSYNTNF" FT 3'UTR 2429..2594 FT /gene="1a" XX SQ Sequence 3643 BP; 1041 A; 748 C; 793 G; 1061 T; 0 other; gtttttatct tacacacgct tgtgcaagat agttaatcca tttattttcc ttgcactttc 60 cacagcatta cgttcattca atactgtgaa gatttcacta tgaatgctga cgcccaatcc 120 accgattcca gccttagtat gcgagagcct ttatctcatg cctccattca ggagatgctt 180 cgacgtgtag tcgaaaaaca agctgcagac gacacaaccg cgatcggaaa ggttttctcc 240 gaagcgggtc gagcctatgc ccaggatgct ctcccttcag acaaaggtga agtcttgaag 300 atatcctttt ccctggacgc cacgcaacaa aacatactac gcaccaactt tcctggtcga 360 cgtattgtat tttcaaacag ttcgagttca tctcactgtt ttgcggctgc ccatcgtcta 420 ctagaaaccg attttgttta ccgatgtttt ggtaatacgg ttgatagtat tatagacctt 480 ggaggaaatt tcgtttccca tatgaaggtg aagcggcata atgtacattg ctgctgtccc 540 attttggatg ctagagacgg agctaggctc acggagagga tattgtctct aaagtcgtac 600 gtccgaaaac acccggaaat tgtgggtgaa gcagattact gcatggacac gtttcagaaa 660 tgctcaaggc gagctgacta tgcttttgcc atccattcta ctagcgatct cgatgtggga 720 gagttagcat gtagtttgga ccaaaaaggc gttatgaaat tcatttgcac catgatggtt 780 gatgcagata tgttaattca taacgagggg gaaattccta acttcaacgt tagatgggag 840 atcgatcgta agaacgatct cattcatttc gacttcatcg acgagcccaa tttgggatat 900 agtcatcggt tttctttgtt aaaacattat ctgacttata atgccgttga tttgggtcat 960 gctgcttatc gaatcgaacg taagcaagat tttggaggtg tgatggttat tgacttaact 1020 tattcccttg gttttgtccc caagatgcca cattccaatg ggaggtcctg cgcctggtat 1080 aatagagtca aaggacaaat ggtagtacac accgttaacg aggggtacta tcatcattca 1140 taccagacag cagtgaggcg gaaagtgctt gtcgataaga aagtgcttac cagagttact 1200 gaagttgcct ttaggcagtt cagacctaat tctgatgctc attccgcgat tcagtccata 1260 gcgactatgt tatcttcttc aacgaatcat accattatcg gtggtgtgac tctgatttcg 1320 ggcaaacctc tcaacccgga tgactatatt ccagtggcaa caacgattta ttatagagtg 1380 agaaaactct ataacgccat tccagagatg ttatccctcc tagacaaagg agagagacta 1440 tcaactgatg ctgttttaaa aggttctgaa ggtccaacgt ggtattctgg tccaaccttt 1500 ttaagcgcac tggataaagt caatgttcct ggtgattttg tcgccaaagc tctgttgtca 1560 ttgcctaaga gagatctgaa atctctattt tctaggtcag tgacatctcc ttctgaacgg 1620 acaccggttc aggatgagag ccccgttcga tgtacagacg gtgtctttta ccctataagg 1680 atgttgttga aatgcctagg aagtgacaaa tttgagtcgg tcactataac tgatcctaga 1740 agtaacacgg aaactaccgt ggacttatac caatctttcc aaaagaaaat tgaaacggtt 1800 ttctcattta ttcttggaaa ggtcgatggt ccttcacctc taatttctga tccagtatac 1860 ttccaatctc ttgaagacgt atactatgct gaatggcatc aaggaaatgc tattgacgcg 1920 tcaagttacg cacgtaccct gttagacaat atcaggaagc agaaagaaga gagcttaaga 1980 gctaaagcga aggaagttga agatgctcaa aaattgaata gagcaatttt gcaagttcat 2040 gcctatttgg aagctcatcc agatggaaga aaaatcgaag gactggggtt gagctctcag 2100 ttcatcgcaa aaatccccga actcgcaatt ccaacaccga aaccgttgcc tgaatttgag 2160 aagaacgcag aaactggcga aattttgcgt atcaatcctc attcagatgc cattcttgaa 2220 gcaattgatt acttgaagtc ctcttcagcc aattctatca ttaccttgag aaaattgggt 2280 gatcattgtc agtggacgac aaaaggtctt gatgtagtat gggccggtga cgataaacgt 2340 cgtgctttca tcccaaagaa aaatacttgg gtcggaccta ctgctagaag ttatcccctt 2400 gcgaaatatg aaagagcaat gagcaaggat gggtacgtaa ccctgagatg ggatggagaa 2460 gtcttagatg ctaattgcgt caggagtttg tctcaatacg agattgtctt tgttgaccaa 2520 tcttgcgtct ttgcctcagc agaacgtatc attccaagcc tagagaaagc cctaggtctt 2580 gaagcacact tttcagttac gattgttgat ggagttgctg gttgtggaaa aaccaccaat 2640 atcaagcaat tagctcgttt atcgggtcag gatgtggatt tgatccttac cagcaatcgt 2700 agctctgccg atgagttaaa agaaaccatc gattgttcac cgttgacaaa attgcattac 2760 attcgtacct gtgattctta cttaatgtct gcctcggcgg taaaagcaca gaggttaatt 2820 tttgatgaat gttttttgca acatgcaggt ctagtctatg ccgctgctac tttggctggt 2880 agtaacgaag ttattggatt tggtgacacg gaacaaatac cttttgtctc aaggaatccg 2940 tcatttgttt ttcgtcatca taagctaact gggaaagtcg agaggaaatt gattacctgg 3000 agatccccag cagatgccac ctactgtctt gaaaaatttt tttataaaaa caagaagccg 3060 gtgaagacaa attccagagt actaagatct atcgaagttg tgccgataaa ttcccccgtg 3120 agcgttgaga gaaataccaa cgctctttat ttgtgccata ctcaagctga aaaagccgtt 3180 ttgaaagctc aaacacattt aaagggatgt gacaatatct ttactactca tgaagctcag 3240 ggtaagactt tcgacaatgt ttatttctgt cgtttaactc gtacctcaac gagtcttacc 3300 actggtagag atccaataaa tggcccatgc catggattag ttgccttgtc gagacacaag 3360 aagactttta aatattttac catcgcccat gatagcgatg atgtgatcta caatgcttgt 3420 agagatgccg gtaataccga cgatagtatt ttagcgagga gctataatac taatttctga 3480 attagtcatt ggtaattcaa tgccaacctc cactgggtgg attaaggttg aggtatagaa 3540 ccctattcgc tcctgatagg aaagattcta tattgcttat atacatgctt atgcatgtat 3600 ataaatgctc atgctaaatt gcatgaatgc ccctaaggga tgc 3643 //