ID   FR694197; SV 1; linear; genomic RNA; STD; VRL; 1645 BP.
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AC   FR694197;
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DT   23-DEC-2010 (Rel. 107, Created)
DT   23-DEC-2010 (Rel. 107, Last updated, Version 1)
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DE   Avian orthoreovirus segment S1, strain AVS-B, genomic RNA
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KW   .
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OS   Avian orthoreovirus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Orthoreovirus.
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RN   [1]
RP   1-1645
RA   Banyai K.;
RT   ;
RL   Submitted (29-SEP-2010) to the INSDC.
RL   Banyai K., Hungarian Academy of Sciences, Veterinary Medical Research
RL   Institute, Hungaria krt. 21., Budapest, H-1143, HUNGARY.
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RN   [2]
RA   Banyai K., Dandar E., Dorsey K.M., Mato T., Palya V.;
RT   "The genomic constellation of a novel avian orthoreovirus strain associated
RT   with runting-stunting syndrome in broilers";
RL   Virus Genes 0:0(2010).
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DR   MD5; d65dd13dfef5a2ed083bef5f8935a83d.
DR   EuropePMC; PMC3709157; 23846280.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1645
FT                   /organism="Avian orthoreovirus"
FT                   /segment="S1"
FT                   /strain="AVS-B"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /db_xref="taxon:38170"
FT   CDS             632..1612
FT                   /gene="sigma-C"
FT                   /product="sigma-C protein"
FT                   /db_xref="InterPro:IPR007662"
FT                   /db_xref="InterPro:IPR041345"
FT                   /db_xref="UniProtKB/TrEMBL:E7AXT6"
FT                   /protein_id="CBX25029.1"
FT                   /translation="MEGLTQSQRREVVGLILSLTSNVTINPGDLTELRERVSALESANA
FT                   SLNEIIKGVLDQLVDLAQKLGNAAGAVVDLRGELNSLTASVQTIQSSLGSLTDSISDLS
FT                   SQVTTNASSPTNLRSMVAGLIADVTNLKRDVSNQGLQMTSLEQRVTSLESGTGSIPTFA
FT                   APLKLDGGIVSLDLDPYFCSVDHNLTSYSASALLMNFQWLVRGEGGSSDSFDMNVTAHS
FT                   HGQRTDFMMSTTQSLTVTGNSVTLVFDLNALISPPSDYSRLIPCHGFQQATFPVDLSFK
FT                   RDDVTHSYQVYGSYTTPRIFKITFSPGNPVPAVIRFITVRTGIDT"
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SQ   Sequence 1645 BP; 359 A; 394 C; 386 G; 506 T; 0 other;
     gctttttcaa tcccttgtgt cgatgttccc gtatgtcatc tggttcatgt aacggtgcaa        60
     cttctatttt tggtaacgtt cactgtcagg cagcgcaaaa ctcggcgggt ggtgatcttc       120
     aagcgacttc ctctcttgtt gcttattggc cctacttggc tgcgggcggt ggtctgctcg       180
     ttgttattat tataattgtt ggcgctgttt gttgttgcaa ggctaaggtt aaagcggacg       240
     cagcccgaaa cgttttctac cgagagctgt tcgcacttaa ttcgggtaaa agtgatgcag       300
     gacctccgat ttaccaggtt tagtgtacga cgatttgagt tttcaccttt cgtcttagag       360
     gagtgcacta ctccatcttt cacgactata actaataccg atccggctct ctactttaac       420
     attgagtttc cgtcaagtca tcgtctctcc cccttcattc cagaactgtt gtctcagcct       480
     tgtaccgttc acgtttcatt gattcggaga ttcgctctct gtgcaacctt atctagtatt       540
     tgtgaatacg actgtgcgct actgccatcc atcaacgcta ttacgacgat ccctacacca       600
     ggtgcgtcat catctctgat tgttcattgg gatggaaggc ttaactcagt cacagcgaag       660
     agaggtcgtg gggctgatac tctcattgac ttcgaacgtg actataaatc ctggcgattt       720
     gacggaactg cgtgagcgcg tctcggcgtt agaatcggcc aatgcgtcgt tgaatgagat       780
     cataaaaggc gtgttagatc agttggtaga tttggcacag aagttgggca atgcggcggg       840
     tgctgtagtt gacctacgag gagagctgaa ctcattaact gccagcgtcc aaactatcca       900
     atcttctttg ggatcactca cggacagtat atcggatctt tctagccaag tgactactaa       960
     cgcctcttcg cccacgaatc tgaggagtat ggtggcgggt cttatagctg atgtgactaa      1020
     tcttaaacgt gacgtatcga atcagggtct tcaaatgacg agtctcgagc agcgtgtaac      1080
     tagtttggaa tctggtactg gatctattcc cacatttgct gctcccctta aattagatgg      1140
     cgggattgtt tcactcgatc tggaccctta cttttgttct gtggaccata atctcacgtc      1200
     gtattccgca agcgctctgc taatgaattt tcagtggctt gttcgaggtg agggagggtc      1260
     gtctgactca ttcgatatga atgtgacagc tcatagccac ggccagagga cagattttat      1320
     gatgtctacc actcagtcgt taactgttac tggaaattct gtcactctag tctttgatct      1380
     taatgcgctt atttctccac cctccgacta ttctcgcttg ataccatgtc atggtttcca      1440
     acaagcgacg tttcccgtgg acctttcgtt taagcgagac gacgtcacgc actcatatca      1500
     ggtgtatggt tcgtacacaa ctcctcgcat tttcaagata actttctccc ctggcaatcc      1560
     agtacctgcg gtcatacgtt tcataaccgt gcgtacgggc atcgatactt aaggtgtggc      1620
     gccgtacggg gattggttat tcatc                                            1645
//