ID FN691959; SV 1; linear; genomic RNA; STD; VRL; 7379 BP. XX AC FN691959; XX DT 01-APR-2010 (Rel. 104, Created) DT 04-JUN-2013 (Rel. 117, Last updated, Version 4) XX DE Cherry virus A complete genome, genomic RNA, isolate JK XX KW . XX OS Cherry virus A OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; OC Capillovirus. XX RN [1] RP 1-7379 RA Noorani M.S.; RT ; RL Submitted (29-MAR-2010) to the INSDC. RL Noorani M.S., Plant Virology, Institute of Himalayan Bioresource Technology RL (CSIR), P.O. Box 6 Palampur, Himachal Pradesh, 176061, INDIA. XX RN [2] RX DOI; 10.1007/s00705-010-0826-6. RX PUBMED; 20938696. RA Noorani M.S., Awasthi P., Singh R.M., Ram R., Sharma M.P., Singh S.R., RA Ahmed N., Hallan V., Zaidi A.A.; RT "Complete nucleotide sequence of cherry virus A (CVA) infecting sweet RT cherry in India"; RL Arch. Virol. 155(12):2079-2082(2010). XX DR MD5; 4d632b22768a831bf0facfc1e0e5159c. DR EuropePMC; PMC4866854; 27174277. DR EuropePMC; PMC6256570; 30533734. XX FH Key Location/Qualifiers FH FT source 1..7379 FT /organism="Cherry virus A" FT /host="Prunus avium variety Manigam" FT /isolate="JK" FT /mol_type="genomic RNA" FT /country="India:Jammu & Kashmir, Shrinagar" FT /isolation_source="host leaf" FT /collected_by="Md. Salik Noorani" FT /collection_date="10-Sep-2009" FT /identified_by="Md. Salik Noorani" FT /db_xref="taxon:42882" FT CDS 55..7083 FT /gene="ORF1" FT /product="polyprotein" FT /db_xref="GOA:D5GXL4" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008879" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:D5GXL4" FT /protein_id="CBL43397.1" FT /translation="MAFVAKFAEENYFNSLPSNVTDAFLRDGFNAEHNRFETLSKHFAF FT ALKPSQRNYLNDCGIQLAPIASKTHPHPVSKTIENHLLYCVVSNMISNFKFLVFLSIKE FT SKAEYIWNKNTSDTVREISNRVLDIKDAFRYSPVNTVNGGLNNFSFFCANLARRFNSRA FT IKPDCFFIHDEVHFWSPSNLCEFLFTLEPKNVLATVVIPPELIEGLNYSFNSVAYDFVK FT VDGNLYYFPDKSKGKPYQQPTDPWLLRCNKISMIKGGETFSYSIGLLESVGANHLFSFQ FT RNKVVESVRFFNDFDCLDLRNLLPINVENKMIKGYNIRTWVFKKILSYIVCLKKGDSES FT SLAKLRQLSDSSPSSDELLLIGDFFDLMTRVKIFNKRSPWSFLSDAKNYVDSWVIQSPF FT LRRIFPVGSKAITELIRDWIANAESLKIQTTCSSLVFSDSFEPIRADNLSSVCDGILES FT VSDSFSKTVKACRNWLICPRFSGGGYSMVSRKGILVGSMNRNTSYSSEVFVDLFPSSVR FT PAFYSDSAFSQLESFEPKWNYLHGSWDYDQRQLRLCYESGLSNDNSESVKVEVVKTFSS FT EPKDENMHLKSNFLDSKSMMGEPSQKIEDADELKQKDQITRKNACFFNAVSETIGVSAD FT SMINKILCSDLPALKPVVEQLVLDNPISSKLLEICCVFLGYRVHIYYGDSIIKLNDNPN FT MHAIHIGGKPGHLFCIQKEKVEIPHDSQLKIPEIGPQAFIGSIFSKTYGMGSSAPIHLS FT EIDITRALTLIAAFESMNLGIRVDRKAILEGNLISNSFLAFLKSKSNEGYKTISIQSLP FT VYPFIGFAGSGKSFGLIEKLIDGDCSQNFMFTAPRKKIIGQVHDKIDSRQYEDKLKISR FT KKNFSTFENTLLSLVNKPLIVMDECSLNPPGFIDLVLLKSLDSIIRKSSKDLNYFFSSS FT AVSEGIIANVASPIACIAATGDILQSSFYSESCGKLMQHKNDLKTLCALSHLRLPYLFG FT SKRFGYFNGFIKLGYYSQMESKAFTIDNMETLLKAVGTSMDKFGVLVTSRADKSDFELD FT FPNVCTINESQGSTFNSVILIVTRDFFSNPIESIIVAITRHQKNLLIYFPAAIQGEMDF FT LSRRFPIHSSVVLKNFSVLDNLIKDKLNPFQLIQEDPFGHDFEVKLEGDPFLKSELSLV FT NDVKLPQIEKAETEVRENLKTHLPISYCGLWDLEISEMRARENREFKKFGVGWSKQFKD FT EPNQRDQIEDNCAMLPEAVFPRHFANDDLTFWSAVKKRLVFKNPLNNVHDFEKAKPFGK FT EMLDIFLKKVPLIPSFDQRMYEESISEFEEKKISKNAAMIGAHHDRSTTDWPINEIFLF FT IKSQLCTKKEKMFCDAKAGQTLACFSHLILCKFAPLNRYIEKKVTQCLPGNFYIHQKKN FT FDELEKWVKSYDFSGVCTESDYEAYDASQDSYTLAFEYELMKYLGVSNSMIEDYLYLKM FT HLNCKLGNLAIMRFTGEFCTFLFNTLTNMLFTFMKYDVRKTHAICFAGDDMCANVRLPE FT NLQHTNLLKKFSLKAKVDFTRSPTFCGWNLSRYGIVKKPELIAARLAVAKQKGEVNLVL FT DSYFLEHLYAYNKGDHLFEILSEKELEHHYNLTRFFVKHGNLLKGESKKKFMETKEIEG FT GLFGECEFGNDGIFRGYMDRVKEKVKIDQINGEILKINSEMNKFNPRIYKINKMSFVTS FT TTIFESGHVTPNEFNQLESLPPQTHWPYDEVRTYMPLNLKNSYESRIKSNKILSILRNQ FT KSLSSLESGSNLGSRVLGGLKIFREECLSYQSRSFSKELQEMNQEYSLTQFVRRTFTVT FT RMPLTPRCLLLLKDFSLQLLYLQAALVKVMLHSSISLMKLSLRLSRRPLLSTRCFILEQ FT SSYVLHAFSSSRNQSMAGLCTLIQGSWTNMMHAKRALVSNCKRVLPITSIGQIIQCPHM FT IQTCIGLLESSLNSMQSMLLTIPTCSSSILESCTNLATKALQKRQLPQMLGRSFKHFLG FT LLDYQILNPFSRMKILSTLQLWLSSMLVLIRASGRVVSSKVRHAQQEPEGIMPEVLVRV FT LNQSQDLLKKILNSKGEICLGQIHVGLKIFSSIQNKGFQLIKNSSTNLISAILREGTQI FT SHMALSIVEQNYNEIRRGLGNYIWKNMIDPRDLLHLTAKPAVEASEGVAATPAIVLSEN FT QRAVKNTIRNYYLRIMFGNLAVMGTSEQTDYPGEHLAIPRPVIENQEALTAHLPAGMSL FT LTFATNVKAWGVVGAEGKFAGLTFRQLCEPFAEQAYNFFRENHGAVSFIYLKNPGAYFN FT CPAVVFDFNKGLPLTIIKIGKNANAISACNQRLFNREGKKAVLAAQGEVNLSFDA" FT CDS 5400..6791 FT /gene="ORF2" FT /product="putative movement protein" FT /db_xref="GOA:D5GXL5" FT /db_xref="InterPro:IPR001815" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:D5GXL5" FT /protein_id="CBL43398.1" FT /translation="MSIIPVKKFLQRVAGDESRIFIDAIRAKDIYSDANAFNSKVLTAV FT KRFQSSIAIPASCTGESNVTQFNIFDEIELEAIKKASAEYSMLHLGAIIICVTCFFKLK FT KPINGRIVYFDPRFLDKHDACQAGFSFQLQTGSAYYLYRPNYPMSTHDPNMHRAARIKF FT EFDAINVVDNSHLFFIDFGVMYQLSNQSTAEKTTAADVGAQFQALFGSSGLPNPESFLE FT DEDIVNPPTVALIDVSVDQSFRKGGFFKGPPRSTRARRYHARSISQGFESIPRFAEKDS FT EQQRRNLLRSNSCRAENFQFNPEQRFSVDQEFINKFDKCNSQRRDSNLTHGFEHCGAEL FT QRNKKGPWKLHLEEYDRSKGSVTSNCETSSGGIRGSGSNPSHSIVREPESCKKHHQELL FT PEDNVWESCSNGNKRTDRLPRGASSDSETSDRESGGSDCTSPSRHVIVNFCHKCESMGC FT SWCRR" XX SQ Sequence 7379 BP; 2299 A; 1366 C; 1497 G; 2217 T; 0 other; tcacttccat caatttccaa acacttccaa aactttcaaa cacaaacaag tgcaatggca 60 tttgtggcta aatttgcaga ggagaattac ttcaactcac tccctagtaa tgtcactgat 120 gcgtttctaa gggatggatt caatgcagaa cacaaccgtt ttgagaccct ctcaaaacac 180 ttcgcttttg cattaaaacc aagtcagcga aattacttga atgattgtgg cattcaacta 240 gcacctattg catccaagac acatccacac cctgtgtcaa aaactattga aaatcatctc 300 ctttactgtg tggtttcaaa tatgatttca aattttaagt ttttggtttt cttgagcatc 360 aaggaaagca aggctgaata catttggaat aaaaacacat cagacacagt gagagagatc 420 tctaatcgcg tccttgatat caaggatgct tttcgttaca gcccagtcaa cacagtcaat 480 ggtggtttga ataactttag cttcttctgt gccaatttgg ccaggagatt taattctaga 540 gccatcaaac ctgactgctt ctttatccat gatgaagtgc atttttggag tccttccaat 600 ctgtgtgagt ttctgttcac cctggaaccc aaaaatgtgt tggcaactgt tgttatacca 660 ccagaattga tagaaggact gaattacagc tttaattcag tagcttatga ttttgtaaag 720 gtggatggca acctttatta ttttcctgac aaatccaaag gcaagcctta tcaacaacct 780 acagacccgt ggttgctcag atgcaataaa atttcaatga ttaagggtgg agaaaccttt 840 tcttactcta taggtctctt ggagtctgtg ggagcaaatc atctcttctc ctttcaaagg 900 aacaaagtcg ttgaatctgt tagattcttc aatgattttg attgcttaga tttgagaaat 960 ttattaccca tcaatgtgga gaataagatg attaaaggtt acaatatcag gacttgggtc 1020 tttaaaaaaa ttttgtctta tattgtctgt cttaaaaaag gagattctga atcttcttta 1080 gctaagttga gacaattaag cgattcttcc ccaagttcag atgagcttct acttattggt 1140 gacttctttg atttgatgac tagagtcaaa atcttcaata aacgcagtcc ttggagtttt 1200 ctaagtgacg cgaaaaatta tgttgattca tgggtcattc aatctccatt tcttagaaga 1260 attttcccag tgggtagcaa agcaatcact gagttaataa gagattggat tgcaaacgct 1320 gaatctttaa aaattcagac aacctgttct tctctcgttt tctcggactc cttcgaaccc 1380 attagagctg acaacctctc ttcagtctgt gatggcatcc ttgaaagtgt ttctgatagc 1440 ttttccaaaa ctgttaaagc ttgcagaaat tggttaatct gcccaagatt tagtggagga 1500 ggttattcaa tggttagtag gaaaggtata cttgttggtt caatgaatcg aaatacatcc 1560 tactcttccg aggtttttgt ggacctcttt ccttcatctg ttagaccagc attttactcc 1620 gactctgctt tttctcaatt ggagtctttt gaacccaaat ggaattatct tcatggctcc 1680 tgggattacg atcaaaggca attaagactt tgctatgaat ctggtctgtc caatgacaat 1740 agtgagagtg tgaaggtcga agttgtcaag accttttctt cagagcctaa ggatgagaat 1800 atgcatctca agtctaactt tttagactcc aaaagcatga tgggagaacc ctcacaaaaa 1860 attgaggatg cagatgaatt aaaacaaaag gaccaaatca caaggaagaa tgcttgcttc 1920 tttaatgcag ttagtgagac tatcggagtt tcagctgatt cgatgataaa caaaattctc 1980 tgctccgatt tgcctgctct caaaccagta gttgagcaat tggttttaga taatccgatt 2040 agttcaaaat tactggaaat ttgctgtgtg tttttaggct atagagtgca tatatactat 2100 ggtgatagta taattaagct caatgacaac ccaaacatgc atgcaattca tattggaggt 2160 aaacctggac atcttttttg catccaaaag gagaaagttg agattcctca tgacagccaa 2220 ctgaaaattc ctgaaatagg accccaggca ttcattggtt caatcttttc aaaaacttat 2280 ggcatgggat caagcgctcc aattcatctg agtgaaatag atatcacaag ggctttgact 2340 ctgattgctg cctttgaatc catgaatcta ggcatccgtg tggacaggaa agccatactt 2400 gaaggtaact tgatatcaaa tagttttttg gctttcctca aaagtaagag taatgaggga 2460 tataagacaa tcagtatcca atctctccca gtttaccctt ttattggatt tgctggttct 2520 ggcaaatctt ttggattaat agagaaatta attgatggtg attgtagcca gaatttcatg 2580 ttcactgcac ctaggaaaaa gatcatagga caagttcatg acaaaattga ctcaaggcaa 2640 tatgaggata aactcaaaat aagcaggaag aagaatttta gcacctttga aaatacattg 2700 ctttctcttg tcaacaagcc attaattgtc atggatgaat gctccttgaa cccacctgga 2760 ttcattgatc tagtgctttt gaagtctcta gattctatca ttagaaagag cagtaaagat 2820 cttaattact tcttttcctc aagtgcagtg tctgaaggaa taattgcaaa tgtcgcctct 2880 ccaattgctt gcatagctgc aacaggtgac atacttcaat caagcttcta ttctgagagt 2940 tgtggtaaat taatgcagca taaaaatgat ttgaaaaccc tttgtgcttt aagccattta 3000 agattgccct acctttttgg ctcaaaaaga tttggttatt tcaatggctt tatcaagctt 3060 ggttattaca gtcaaatgga gtcaaaggcc ttcacaattg acaacatgga aactcttttg 3120 aaagctgtgg gcacttcaat ggataaattt ggggttttgg tgacatctag agcagacaaa 3180 tcagattttg aactagattt cccaaatgtc tgtacaatta acgagtcaca gggcagcact 3240 ttcaatagtg taattttgat agttacaaga gacttctttt caaatccaat tgagtcaatc 3300 attgtagcaa tcacaaggca tcaaaaaaat ctcttgatct actttcctgc tgcaatccag 3360 ggtgagatgg attttcttag cagaagattt ccaattcact caagtgttgt cctcaaaaac 3420 tttagtgtct tggataatct tatcaaagac aaactcaatc catttcagtt gattcaggaa 3480 gatccattcg gacatgattt tgaagttaaa cttgaagggg atcctttcct gaagagtgaa 3540 ttgagcctgg tgaatgatgt caaactccca caaattgaga aggctgaaac tgaagtgaga 3600 gaaaatctca aaactcacct tccaatttca tattgcggac tgtgggatct agaaataagt 3660 gagatgagag ctagggaaaa tagggaattc aagaagtttg gtgtcggctg gagcaagcaa 3720 ttcaaagatg agccaaatca gagagaccaa attgaagaca attgtgcaat gcttccagaa 3780 gcagtttttc caaggcactt tgcaaatgat gacctgacgt tctggagtgc ggttaaaaaa 3840 agactagttt tcaaaaatcc attaaacaat gtgcatgatt ttgagaaggc taaaccattt 3900 ggtaaagaaa tgcttgacat ctttcttaag aaagtcccac ttattcctag ctttgatcag 3960 aggatgtatg aggaatccat ttcagaattt gaagagaaga agataagcaa gaatgcggcc 4020 atgattgggg cccatcatga tcgatcaaca actgactggc caataaacga gatctttctt 4080 ttcataaaat cccaactttg cacaaagaaa gagaaaatgt tttgtgatgc taaagccggc 4140 caaactcttg cctgcttttc tcacttaatt ctttgtaagt ttgcaccact aaacaggtat 4200 attgagaaga aagtgaccca gtgcttgcca ggtaatttct acatacatca gaagaaaaat 4260 tttgatgaac tcgaaaagtg ggtgaaatca tatgatttta gtggagtctg cacggagtca 4320 gattatgaag cttatgatgc atcacaagat tcttacactc tggcctttga gtatgaattg 4380 atgaagtacc ttggtgtctc caacagtatg attgaggatt atctttatct caaaatgcat 4440 cttaattgca agctagggaa cctagctatc atgagattca ctggagaatt ttgtactttc 4500 ttgttcaata ccttgacaaa catgttattc acattcatga agtatgatgt caggaaaact 4560 catgcaatat gttttgctgg tgatgacatg tgcgccaatg tgaggcttcc agagaatttg 4620 caacacacaa atttactcaa aaaattttct ttgaaagcta aagtggattt tactcgctcc 4680 cccacttttt gcggatggaa tctatcccga tatggaatcg tgaagaaacc tgaattgatt 4740 gccgccaggt tagctgtggc taaacagaaa ggggaggtta atttagtttt ggattcatac 4800 ttcctagagc atttgtatgc ttataacaaa ggtgatcacc tctttgaaat tttgagtgag 4860 aaggaattgg aacatcacta caacctgacc agattctttg tcaagcatgg gaaccttttg 4920 aagggtgagt ctaagaagaa attcatggaa accaaggaga ttgaaggggg tttatttggt 4980 gagtgtgagt ttgggaatga tggcatcttc aggggctaca tggacagagt taaagagaaa 5040 gtcaagattg accaaataaa tggtgaaatt ctcaaaatta actctgaaat gaacaaattt 5100 aatccaagaa tttacaagat caataaaatg agctttgtca ctagcaccac aatctttgaa 5160 tctggccatg tgacaccaaa tgagttcaat caattggaaa gcctcccccc acaaacacat 5220 tggccatatg atgaagtcag aacatacatg cctctgaatt tgaagaactc atatgaatct 5280 aggattaaga gcaacaaaat cctgtcaata ctgaggaatc agaagagctt aagtagtttg 5340 gaatcaggct ctaatttagg ttcaagagtt ttggggggct tgaaaatatt cagagaagaa 5400 tgtctatcat accagtcaag aagtttctcc aaagagttgc aggagatgaa tcaagaatat 5460 tcattgacgc aattcgtgcg aaggacattt acagtgacgc gaatgccttt aactccaagg 5520 tgcttactgc tgttaaaaga tttcagtctt caattgctat acctgcaagc tgcactggtg 5580 aaagtaatgt tacacagttc aatatctttg atgaaattga gcttgaggct atcaagaagg 5640 cctctgctga gtactcgatg cttcatcttg gagcaatcat catatgtgtt acatgctttt 5700 tcaagctcaa gaaaccaatc aatggcagga ttgtgtactt tgatccaagg ttcctggaca 5760 aacatgatgc atgccaagcg ggctttagtt tccaattgca aacgggttct gcctattacc 5820 tctataggcc aaattatcca atgtccacac atgatccaaa catgcatagg gctgctagaa 5880 tcaagtttga attcgatgca atcaatgttg ttgacaattc ccacttgttc ttcatcgatt 5940 ttggagtcat gtaccaactt agcaaccaaa gcactgcaga aaagacaact gccgcagatg 6000 ttggggcgca gtttcaagca ctttttgggt cttctggact accaaatcct gaatcctttc 6060 tcgaggatga agatattgtc aaccctccaa ctgtggctct catcgatgtt agtgttgatc 6120 agagcttccg gaagggtggt ttcttcaaag gtccgccacg ctcaacaaga gccagaaggt 6180 atcatgccag aagtattagt cagggttttg aatcaatccc aagatttgct gaaaaagatt 6240 ctgaacagca aaggagaaat ttgcttaggt caaattcatg tagggctgaa aattttcagt 6300 tcaatccaga acaaaggttt tcagttgatc aagaattcat caacaaattt gataagtgca 6360 attctcagag aagggactca aatctcacac atggctttga gcattgtgga gcagaattac 6420 aacgaaataa gaaggggcct tggaaactac atctggaaga atatgataga tccaagggat 6480 ctgttacatc taactgcgaa accagcagtg gaggcatcag agggagtggc agcaacccca 6540 gccatagtat tgtcagagaa ccagagagct gtaaaaaaca ccatcaggaa ttattacctg 6600 aggataatgt ttgggaatct tgcagtaatg ggaacaagcg aacagacaga ctacccaggg 6660 gagcatctag cgattccgag accagtgata gagaatcagg aggctctgac tgcacatctc 6720 ccagcaggca tgtcattgtt aacttttgcc acaaatgtga aagcatgggg tgtagttggt 6780 gcagaaggta agtttgctgg attaaccttt agacagttat gtgagccatt cgctgaacaa 6840 gcttataact ttttcagaga aaatcatgga gctgtctcat ttatttatct aaagaatcca 6900 ggagcttatt ttaattgccc agctgtggtt tttgatttca ataaagggtt gcctttaact 6960 ataatcaaaa ttggaaaaaa tgccaatgca atatccgcct gtaaccaaag gttgtttaac 7020 agagaaggga agaaggctgt cctcgctgca cagggcgaag ttaacttaag ttttgatgct 7080 taagttttgc ttgttgcttg aatcccagag caattaaaag atgatggcat aggtcttgga 7140 ttgtgatgtt aactctcaaa tccatcaccg gcaccaatca agggtgtgta cttggtcact 7200 agagaagaag tgtaagtctt ctccaacctt aagagaggtt aatttctctt ccctggttta 7260 agtactagga tttgcatcat ttgttctaaa ggttctttgg atgcatctta tttagaacct 7320 ttccgctttc agtgctatct aactgcacct tgctttagga ctttttattc tttttcctt 7379 //