ID FN678906; SV 1; circular; genomic DNA; STD; VRL; 2752 BP. XX AC FN678906; XX DT 11-MAR-2012 (Rel. 112, Created) DT 11-MAR-2012 (Rel. 112, Last updated, Version 1) XX DE Croton yellow vein mosaic virus, complete sequence, clone HYDNA A XX KW . XX OS Croton yellow vein mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2752 RA Zia ur Rehman M.; RT ; RL Submitted (11-MAR-2010) to the INSDC. RL Zia ur Rehman M., School of Biological Sciences, Lab 10, SBS, University of RL the Punjab, Lahore, 54590, PAKISTAN. XX RN [2] RA Zia Ur Rehman M., Haider M.S.; RT "Begomoviruses infecting Alcea rosea, producing yellow vein symptos in RT Pakistan."; RL Unpublished. XX DR MD5; 3d7bbfe078fe135e42bece58faeb626f. XX FH Key Location/Qualifiers FH FT source 1..2752 FT /organism="Croton yellow vein mosaic virus" FT /host="Alcea rosea" FT /mol_type="genomic DNA" FT /country="Pakistan:Lahore" FT /isolation_source="host leaves" FT /collected_by="Muhammad Zia Ur Rehman" FT /collection_date="2006" FT /clone="HYDNA A" FT /db_xref="taxon:207697" FT CDS 143..490 FT /gene="av2" FT /product="pre coat protein" FT /db_xref="GOA:H8PGE9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H8PGE9" FT /protein_id="CBK44090.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGHDLIRDL FT ISVIRARNYVEASSRYNHFHARFEGTPSSQLRQPICEPCCCPHCPRHQSKGMGEQAHEQ FT KAQDVQDVQKP" FT CDS 303..1073 FT /gene="cp" FT /product="coat protein" FT /function="encapsidation" FT /db_xref="GOA:H8PGF0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H8PGF0" FT /protein_id="CBK44091.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVNRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(1070..1474) FT /gene="ac3" FT /product="replication enhancer protein" FT /db_xref="GOA:H8PGE7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H8PGE7" FT /protein_id="CBK44092.1" FT /translation="MDSRTGEPITAAQAENGVYIWEIQNPLYFKILQHHNRPFLMKEDI FT MTIRIQFNHNLRKALGIHKCFLVFRIWMTSQPQTGRFLRVFKTQVLKYLNNLGVISINN FT VIRSVDHVLWNVLQHIVYVEQSYSIKFNIY" FT CDS complement(1215..1619) FT /gene="ac2" FT /product="transcriptional activation protein" FT /db_xref="GOA:H8PGF1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H8PGF1" FT /protein_id="CBK44093.1" FT /translation="MRPSSPSNAHSTQVPIKVQHKIAKKGIRRRRVDLPCGCSYFISIA FT CHNHGFTHRGTHHCSSSREWRVYLGDSKSPLFQDIAAPQPSIPHERRHNDNPNTVQSQP FT EESVGDTQMFSSLPNLDDFTASDWSFLKGI" FT CDS complement(1522..2607) FT /gene="ac1" FT /product="replication associated protein" FT /db_xref="GOA:H8PGF2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H8PGF2" FT /protein_id="CBK44094.1" FT /translation="MTRINSFCVNAKNIFLTYPKCPIPKEQMLEILQSINCPSDKLFIR FT VAQEKHQDGSLHIHALIQFKGKAKFRNPRHFDVTHPNNSSQFHPNFQGAKSSSDVKSYI FT EKDSDYIDWGQFQIDGRSARGGQQTANDAAAEALNAGSAEAALAIIREKLPKDFIFQYH FT NLKCNLDRIFTPPVEAYVSPFSSSSFDQVPQELEEWAAENVVSAAARPLRPISIVIEGD FT SRTGKTIWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNAALKNWALKNATFITLECPL FT YSGSNQSAAQDSQEGDQASTS" FT CDS complement(2193..2450) FT /gene="ac4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H8PGE8" FT /protein_id="CBK44095.1" FT /translation="MGLCISMPSSSSKVKPNSETPDISMSLTLITPPNSTQTSKEQSPA FT LMSSPTSRRTVITSTGVSFRSMEDLLEEVNRQLMMLQQRP" XX SQ Sequence 2752 BP; 777 A; 531 C; 619 G; 825 T; 0 other; accggatggc cgcgaaaaaa aagtgggccc cgccatgcac taaatgacaa agacatctcc 60 accaatgaaa agagttcctc aaagcttaat tgttatgtgg tcccctattt aaacttcgtc 120 accaagtagt gcaatacgca ctatgtggga tccattggta aacgagtttc ccgaaaccgt 180 tcacggtttt agatgtatgt tagcagttaa atatctgcag ttagtagaga agacttattc 240 tccagataca ttagggcatg atttaattag ggatttaatt tcagttatca gggctagaaa 300 ttatgtcgaa gcgtccagca gatataatca tttccacgcc cgcttcgaag gtacgccgtc 360 gtctcaactt cgacagccca tatgtgaacc gtgctgctgc ccccattgtc cgcgtcacca 420 aagcaaaggc atgggcgaac aggcccatga acagaaagcc caggatgtac aggatgtaca 480 gaagccctga tgtccctaga ggatgtgaag gcccatgtaa ggtccagtct tttgagtcta 540 gacatgacat tcagcatata ggtaaagtta tgtgtattag tgatgttact cgtggaactg 600 ggctgaccca tcgagtgggt aaaaggtttt gtgtaaagtc tgtttatgtt ttgggtaaga 660 tctggatgga tgaaaatatt aagaccaaaa atcacactaa tagtgtgatg ttctttctag 720 ttagggatcg taggcctgtg gataaacccc aagattttgg agaggtattt aacatgtttg 780 ataatgagcc cagtacggct actgtgaaga acgttcatcg tgataggtat caagttcttc 840 ggaaatggca tgcaactgtt acgggtggac aatatgcgtc aaaggaacaa gccctcgtga 900 agaagtttgt tagggttaac aattatgttg tttataacca gcaagaggct ggcaaatatg 960 agaatcattc tgagaatgcg ttaatgttgt atatggcatg tactcatgca tctaacccag 1020 tgtatgctac tctgaaaata cggatctatt tttatgattc cgtaacaaat taataaatat 1080 taaattttat tgaataagat tgttctacat atacaatgtg ttgtaataca ttccataata 1140 catgatcaac tgatctgatt acattattaa tactgataac tcctaaatta tttaagtatt 1200 taagaacttg agtcttaaat acccttaaga aacgaccagt ctgaggctgt gaagtcatcc 1260 agattcggaa gactagaaaa catttgtgta tccccaacgc tttcctcagg ttgtgattga 1320 actgtattcg gattgtcatt atgtcttctt tcatgaggaa tggacggttg tggtgctgca 1380 atatcttgaa ataaagggga ttttgaatct cccagatata cacgccattc tctgcttgag 1440 ctgcagtgat gggttcccct gtgcgtgaat ccatggttgt ggcaggctat ggatatgaag 1500 tatgaacagc cacacggtag atcaactcgt cgacgcctga tccccttctt ggctatcttg 1560 tgctgcactt tgattggaac ctgagtagag tgggcattcg agggtgatga aggtcgcatt 1620 ctttaaagcc caattcttca gtgcagcatt cttctcttca tccaagaact ctttataact 1680 ggaattgggt cctggattgc agaggaagat agtgggaatt ccgcctttaa tttgaactgg 1740 ctttccgtac tttgtatttg attgccagtc cctttgggcc cccatgaact ctttaaagtg 1800 ctttaggtaa tggggatcta cgtcatcaat gacgttatac caggcatcat tattgtagac 1860 ctttgggcta aggtctagat gtccacacaa ataattatgt ggtccgagtg atctggccca 1920 tatcgtcttg cccgttctac tatcaccctc tatcactata cttatgggcc tcaaaggccg 1980 cgcagcggca ctgacaacgt tctcggcagc ccactcctca agttcttgtg gaacttgatc 2040 aaaagaagaa gaggaaaaag gagaaacata agcctccacc ggaggtgtaa aaatcctatc 2100 taaattacat tttaaattat gatattgaaa aataaaatct ttggggagtt tttccctaat 2160 tattgctaaa gcagcttcag ccgaacctgc atttagggcc tctgctgcag catcattagc 2220 tgtctgttga cctcctcgag cagatcttcc atcgatctga aactgacccc agtcgatgta 2280 atcactgtcc ttctcgatgt aggacttgac atcagagctg gactttgctc cttggaagtt 2340 tgggtggaat tgggaggagt tattagggtg agtgacatcg aaatgtctgg ggtttctgaa 2400 tttggcttta cctttgaact ggatgagggc atggatatgc agagacccat cttggtgttt 2460 ttcttgtgcc actctgataa ataatttatc agatgggcaa tttattgact gaagaatctc 2520 gagcatttgc tcttttggta ttgggcattt tggataagtg aggaagatat ttttggcatt 2580 aacacaaaaa gagttaatac gagtcatatt gaattgggga cactcaaaac tctgaggaat 2640 gggggactcg ggggacgcat ttatatggtg tccccaaatg gcatatttgt aattttgaaa 2700 aatgctttaa ttcaaaattc aaaattccca aagcggccat ccgtataata tt 2752 //