ID   FN667967; SV 1; linear; genomic RNA; STD; VRL; 2038 BP.
XX
AC   FN667967;
XX
DT   26-AUG-2010 (Rel. 105, Created)
DT   26-AUG-2010 (Rel. 105, Last updated, Version 1)
XX
DE   Alfalfa mosaic virus RNA3 segment complete sequence, genomic RNA
XX
KW   complete genome.
XX
OS   Alfalfa mosaic virus
OC   Viruses; Riboviria; Bromoviridae; Alfamovirus.
XX
RN   [1]
RP   1-2038
RA   Parrella G.;
RT   ;
RL   Submitted (12-FEB-2010) to the INSDC.
RL   Parrella G., CNR- National Research Council, Istituto per la Protezione
RL   delle Piante, Via Universita 133 - Portici (NA), 80055, ITALY.
XX
RN   [2]
RX   DOI; 10.1094/PDIS-94-7-0924A.
RX   AGRICOLA; IND44392344.
RA   Parrella G., Acanfora N., Bellardi M.G.;
RT   "First Record and Complete Nucleotide Sequence of Alfalfa mosaic virus from
RT   Lavandula stoechas in Italy";
RL   Plant Dis. 94(7):924-924(2010).
XX
DR   MD5; 7e1138f05363f0cb8a54810f75e00df6.
DR   RFAM; RF00252; Alfamo_CPB.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2038
FT                   /organism="Alfalfa mosaic virus"
FT                   /segment="RNA3"
FT                   /host="Lavandula stoechas"
FT                   /isolate="Lst"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy:Liguria (Savona province)"
FT                   /db_xref="taxon:12321"
FT   5'UTR           1..240
FT   CDS             241..1143
FT                   /gene="3a"
FT                   /product="30 kDa protein"
FT                   /function="movement protein"
FT                   /db_xref="GOA:E0WEX7"
FT                   /db_xref="InterPro:IPR002538"
FT                   /db_xref="UniProtKB/TrEMBL:E0WEX7"
FT                   /protein_id="CBJ56557.1"
FT                   /translation="MENTKTNASSSGMSSSSSFSVSYAEEILLADEVSRINSMSILGPN
FT                   QLKLCTQLVLSNGAAPVVLSLVSKEKKSILNRMLPKIGQRMYVHHSAIYLLYMPNILKS
FT                   SSGSITLKLFNEATEELVDVDTDHDATQACIFAGRYPRSILAKDAAKGHDLKLVVHAVA
FT                   STKANSAVGVLYPIWEDELSRKQILERGADFLKFPIAETEPVRDLLNAGKLTDFVLDRT
FT                   RLGVGSKNDPNPVLLEPRAKITGKAKTVFIPEGPSVPNTTISGIAPTVRIDAGSPKGLG
FT                   VPKGFTYESFIKDEILPDH"
FT   misc_feature    1144..1192
FT                   /note="intergenic region"
FT   CDS             1193..1849
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="24 kDa protein"
FT                   /db_xref="GOA:E0WEX8"
FT                   /db_xref="InterPro:IPR002681"
FT                   /db_xref="UniProtKB/TrEMBL:E0WEX8"
FT                   /protein_id="CBJ56558.1"
FT                   /translation="MSSSQKKAGGKAGKPTKRSQNYAALRKAQLPKPPALKVPVAKPTN
FT                   TILPQTGCVWQSLGTPLSLSSFNGLGVRFLYSFLKDFAGPRILEEDLIYRMVFSITPSH
FT                   AGTFCLTDDVTTEDGRAVAHGNPMQEFPHGAFHANEKFGFELVFTAPTHAGMQNQNFKH
FT                   SYAVALCLDFDAQPEGSKNPSYRFNEVWVERKAFPRAGPLRSLITVGLLDEADDL"
FT   3'UTR           1850..2038
XX
SQ   Sequence 2038 BP; 552 A; 436 C; 455 G; 595 T; 0 other;
     gtattaatac cattttcaaa atattccaat tcaactcaat taacgctttt acagtgtaat        60
     tcgtactttt cgtaagtaag tttctgtaaa agcgtttctt gttttaattt ggtctaacac       120
     gtaattcgta ctcttcgtga gtaagttgtg ttagccatac ctatccttta aatttctggc       180
     aatttaaaaa gaaaatcatt cccattcgcg taattcgtac tcttcgtgag taagttgcaa       240
     atggagaata caaaaacaaa tgcctcgagt tctggaatgt cttcttcctc tagcttttca       300
     gtgtcttatg ctgaggaaat attactagct gatgaagttt caagaataaa ctcaatgtct       360
     attctgggtc ctaatcagct aaagctctgc actcaattgg tgctgtctaa tggagcagcg       420
     ccagtagttt taagccttgt gtcaaaggaa aagaaatcga ttttaaatcg tatgcttcct       480
     aagattggac agaggatgta cgtccatcac tcggctattt accttcttta tatgccaaat       540
     atactaaaaa gttcttcagg gagcatcacc ttgaagcttt ttaatgaggc tacagaagag       600
     ttagtggatg ttgacaccga ccatgatgct acccaagcat gtatatttgc tggacgttac       660
     ccccggagta ttctggcgaa agatgcagcg aaaggacacg acttaaaatt agtcgtccac       720
     gctgttgctt cgaccaaagc gaactctgca gtcggtgttc tataccccat ttgggaagat       780
     gagttaagca gaaagcagat cctcgaaagg ggtgccgatt tcctaaagtt tccaattgct       840
     gagaccgaac cagtccgcga tctcttaaat gctgggaaat tgacggactt tgttcttgat       900
     aggacaaggt taggtgtggg atcaaagaat gatcccaatc cggttctttt agaaccaaga       960
     gctaagatta ccgggaaggc aaagacagtt tttattcccg aaggtcctag tgttcctaat      1020
     accactataa gtggtatagc accgacggtg cgtatagatg ccggttctcc aaagggtctt      1080
     ggagttccga aagggtttac atatgaaagt tttattaaag atgaaatatt acccgatcat      1140
     tgatcggtaa tgggccgttt ttatttttaa ttttctttca attacttcca tcatgagttc      1200
     ttcacaaaag aaagctggtg ggaaagctgg taaacctact aaacgttctc agaactatgc      1260
     tgctctacgc aaagctcaac tgccgaagcc tccggcgttg aaagtcccgg ttgcaaaacc      1320
     gacgaatact atactgccac agacgggctg tgtgtggcaa agcctcggga cccctctgag      1380
     tctgagctct tttaatgggc tcggcgtgag attcctctac agttttctga aggatttcgc      1440
     gggacctcgg atcctcgaag aggatctgat ttacaggatg gtgttttcta taacaccgtc      1500
     ccatgccggc actttttgtc tcactgatga cgtgacgact gaggatggta gggccgttgc      1560
     gcatggtaat cccatgcaag aatttcctca tggcgcgttt cacgccaatg agaagttcgg      1620
     gtttgagctg gtcttcacag ctcctaccca tgcgggaatg caaaatcaaa atttcaagca      1680
     ttcctatgcc gtagcccttt gtttggactt cgatgcgcag cctgagggat ctaaaaatcc      1740
     ctcataccga ttcaacgaag tttgggtcga gagaaaggcg ttcccgcgag cagggcccct      1800
     ccgcagtttg ataactgtgg ggctgctcga cgaagctgac gatctttgat cgccattgat      1860
     gtaccccatt aatttgggat gctaaagtca tttaatgctg acctccactg ggtggattaa      1920
     ggtcaaggta tgaagtccta ttcgctcctg ataggatcga cttcatattg cttatatatg      1980
     tgctaacgca catatataaa tgctcatgca aaactgcatg aatgccccta agggatgc        2038
//