ID FN667965; SV 1; linear; genomic RNA; STD; VRL; 3643 BP. XX AC FN667965; XX DT 26-AUG-2010 (Rel. 105, Created) DT 26-AUG-2010 (Rel. 105, Last updated, Version 1) XX DE Alfalfa mosaic virus RNA1 segment complete sequence, genomic RNA XX KW complete genome. XX OS Alfalfa mosaic virus OC Viruses; Riboviria; Bromoviridae; Alfamovirus. XX RN [1] RP 1-3643 RA Parrella G.; RT ; RL Submitted (12-FEB-2010) to the INSDC. RL Parrella G., CNR- National Research Council, Istituto per la Protezione RL delle Piante, Via Universita 133 - Portici (NA), 80055, ITALY. XX RN [2] RX DOI; 10.1094/PDIS-94-7-0924A. RX AGRICOLA; IND44392344. RA Parrella G., Acanfora N., Bellardi M.G.; RT "First Record and Complete Nucleotide Sequence of Alfalfa mosaic virus from RT Lavandula stoechas in Italy"; RL Plant Dis. 94(7):924-924(2010). XX DR MD5; b94ebc7a37e65c79be1b39c2927ab467. DR RFAM; RF00196; AMV_RNA1_SL. DR RFAM; RF00252; Alfamo_CPB. XX FH Key Location/Qualifiers FH FT source 1..3643 FT /organism="Alfalfa mosaic virus" FT /segment="RNA1" FT /host="Lavandula stoechas" FT /isolate="Lst" FT /mol_type="genomic RNA" FT /country="Italy:Liguria (Savona province)" FT /db_xref="taxon:12321" FT 5'UTR 1..99 FT CDS 100..3480 FT /gene="1a" FT /product="126 kDa protein" FT /function="methyltransferase and helicase" FT /db_xref="GOA:E0WEX5" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:E0WEX5" FT /protein_id="CBJ56555.1" FT /translation="MNADAQSTDSGLSMREPLSHASIQEMLRRVVEKQAADDTTAIGKV FT FSEAGRAYAQDALPSDKGEVLKISFSLDATQQNILRANFPGRRIVFSNSSSSSHCFAAA FT HRLLETDFVYRCFGNTVDSIIDLGGNFVSHMKVKRHNVHCCCPILDATDGARLTERILS FT LKSYVRKHPEIVGEADYCMDTFHKCSRRADYAFAIHSTSDLDVGELACSLDRKGVMKFI FT CTMMVMADMLIHNEGEIPNFNVRWEIDRKNDFIHFDFIDEPTLGYSHRFSLLKHYLAYN FT AVDLGHAAYRIERKQDFGGVMVIDLTYSLGFVPKMPHSNGRSCAWYNRVKGQMVVHTVN FT EGYYHHSYLTAVRRKVLVDKKVLTRVTEVAFRQFRPNSDAHSAIQSIATMLSSSTNHTI FT IGGVTLISGKPLSPDDYIPVATTIYYRVKKLYNAIPEMLSLLDKGERLSTDAVLKGSEG FT PTWYSGPTFLSALDKVNVPGDFVAKALLSLPKRDLKSLFSRSATSHSERTPVQDESPVR FT CTDGVFYPIRMLLKCLGSDKFESVTITDPRSNTETTVDLYQSFQKKIETVFSFILGKID FT GPSPLISDPVYFQSLEDVYYAEWHQGNTIDASSYARTLLDNIRKQKEESLKAKAKEVED FT AQKLNRAILQVHAYLEAHPDGRKIEGLGLSSQFIAKIPELAIPTPKPLPEFEKNAETGE FT ILRINPHSDAILEAIDYLKSTSANSIITLNKLGDHCQWTTKGLDVVWAGDDKRRAFIPK FT KNTWVGPTARSYPLAKYERAMSKDGYVTLRWDGEVLDANCVRSLSQYEIVFVDQSCVFA FT SAERIIPSLEKALGLEAHFSVTIVDEVAGCGKTTNIKQIARSSGQDVDLILTSNRSSAD FT ELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSE FT VIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNMRPVK FT TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQG FT KTFDNVYFCRLTRTSTSLTTGRDPINGPCHGLVALSRHEKTFKYFTIAHDSDDVIYNAC FT RDAGNTDDSILARSYNTNF" FT 3'UTR 3481..3643 XX SQ Sequence 3643 BP; 1030 A; 755 C; 803 G; 1055 T; 0 other; gtttttatct tacacacgct tgtgcaagat agttaatcca tttattttcc ttgcactttc 60 cacagcatta cgttcattca atactgtgaa gatttcacta tgaatgctga cgcccaatcc 120 accgattccg gccttagtat gcgagaacct ttatctcatg cctccattca ggagatgctt 180 cgacgtgtag tcgaaaaaca agctgcagac gacacaactg cgatcggaaa ggttttctcc 240 gaagcgggtc gtgcctatgc ccaggatgct ctcccttcag acaaaggtga agtcttgaag 300 atatcctttt ccctggatgc cacgcaacaa aacatactac gcgccaactt tcctggtcga 360 cgtattgtat tttcaaacag ctcgagttca tctcactgtt ttgcggctgc ccatcgtcta 420 ctagaaactg attttgttta ccgatgtttc ggtaatacgg ttgatagtat tatagacctt 480 ggaggaaatt tcgtttccca tatgaaggtg aagcggcata atgtacattg ctgctgtccc 540 atattggatg ctacagacgg agctaggctc acggagagaa tattgtctct aaagtcgtat 600 gtccgaaaac acccggaaat tgtgggtgaa gcagattact gtatggacac gtttcacaaa 660 tgctcaaggc gagctgacta tgcttttgcc atccactcta ctagcgatct cgacgtggga 720 gagttggcct gtagtttgga ccgaaaaggc gttatgaaat tcatttgcac catgatggtt 780 atggcagata tgttaattca taacgagggg gaaattccta actttaatgt tagatgggag 840 atcgatcgta agaacgattt cattcatttc gacttcatcg acgagccaac tttgggatat 900 agtcatcggt tttcattgct gaaacactat ttggcttaca atgccgttga tttgggtcat 960 gctgcttatc gaatcgaacg taagcaagat tttggaggtg tgatggttat tgacttaact 1020 tattcccttg gatttgtccc caagatgcca cactccaatg ggaggtcctg cgcctggtat 1080 aatagagtca aaggacaaat ggtagtgcac accgttaacg aggggtacta tcatcattca 1140 tacctgacag cagtgaggcg gaaagtgctt gtcgacaaga aagtgcttac cagagttact 1200 gaagtcgcct ttaggcaatt cagacctaat tctgatgctc attccgcaat tcagtccata 1260 gcgactatgt tatcttcttc aacgaatcat accattatcg gtggtgtgac tctgatttcg 1320 ggcaaacctc tcagcccgga tgactatatt ccagtggcaa caacgattta ttatagagtg 1380 aaaaaactct ataacgccat tccagagatg ctatccctcc tagacaaagg agagaggcta 1440 tcaactgatg ctgttttaaa agggtctgaa ggtccaacgt ggtattctgg tcctaccttt 1500 ttaagcgcgc tggataaagt caatgttcct ggtgattttg tcgccaaagc tctgttgtcg 1560 ttgcctaaga gagatctgaa atctctattt tctaggtcag cgacttctca ttctgaacgg 1620 acaccggttc aggatgagag ccccgttcga tgcacagacg gtgtcttcta ccctataagg 1680 atgttgttga aatgcctagg aagtgacaaa tttgagtcgg tcactataac tgatcctaga 1740 agtaacacgg aaactaccgt ggatttatac caatctttcc aaaagaaaat tgaaacggtt 1800 ttctcattca ttcttggaaa gattgatggt ccttcacctc taatttctga tccagtatac 1860 ttccaatcac ttgaagatgt gtactatgct gaatggcacc aaggaaatac catcgatgcg 1920 tcaagttacg cacgtaccct gttagacaat atcaggaagc agaaagaaga gagtttaaaa 1980 gctaaagcga aggaagttga agatgctcaa aaattaaata gagcaatttt gcaagttcat 2040 gcctatttgg aagctcatcc agatggaaga aaaatcgaag gactggggtt gagttctcag 2100 ttcatcgcga aaatccccga gcttgcaatt ccaacgccaa aaccgttacc tgaatttgag 2160 aagaacgcag aaactggcga aattttgcgt atcaaccctc attcagatgc cattcttgaa 2220 gcaattgatt acttgaagtc cacttcagcc aattctatca ttaccttgaa taaattgggt 2280 gatcattgtc agtggacgac aaaaggtctt gacgtagtat gggccggtga cgacaaacgt 2340 cgagctttca tcccaaagaa aaatacttgg gtcggaccta ctgctagaag ttatcccctt 2400 gcaaaatatg aaagagcaat gagcaaggat ggatatgtaa ctctgagatg ggacggagaa 2460 gttctagatg ctaattgcgt caggagtttg tctcaatacg agattgtctt tgttgaccaa 2520 tcttgcgtct ttgcctcagc ggaacgtatc attccaagcc tagagaaagc cctaggtctt 2580 gaagcacact tttcagttac gattgttgat gaagttgctg gttgcggaaa aaccaccaat 2640 atcaagcaaa tagcccgttc atcgggtcag gatgtggatt tgatccttac cagcaatcgt 2700 agctctgccg atgagttgaa agaaaccatc gattgttcac cgttgacaaa gttgcattac 2760 attcgtacct gtgattctta cttgatgtct gcctcggcgg taaaagcaca gaggttaatt 2820 tttgatgaat gttttttgca acatgcaggt ttagtctatg ccgctgccac tttagctggt 2880 tgcagcgaag tcattggttt tggtgacacg gaacaaattc cttttgtctc aaggaatccg 2940 tcatttgttt ttcgtcatca taagctaact gggaaagtcg agaggaaact aattacctgg 3000 agatccccag cagatgccac ctattgcctt gaaaagtatt tttacaagaa catgagaccg 3060 gtgaagacaa attccagagt actaagatct atcgaagttg tgccgataaa ttcccctgtg 3120 agcgttgaga gaaataccaa cgctctttat ttgtgtcata ctcaagctga aaaggcagtt 3180 ttgaaggctc aaacgcattt aaagggatgt gataatatct ttactactca tgaagctcag 3240 ggtaagactt tcgacaatgt ttatttctgt cgtttaactc gtacctcaac gagtcttact 3300 actggtagag atccaataaa tggtccatgc catggattag ttgccttgtc gagacacgag 3360 aagactttta aatattttac catcgcccat gatagcgatg atgtgatcta caatgcttgt 3420 agagatgccg gtaataccga cgatagtatt ttagcgagga gctataatac taatttctga 3480 attagtcatt ggtaattcaa tgccaacctc cactgggtgg gttaaggttg aggtatagaa 3540 tcctattcgc tcctgatagg agaaattcta tattgcttat atacgtgctt atgcacgtat 3600 ataaatgctc atgctaaatt gcatgaatgc ccctaaggga tgc 3643 //