ID FN552001; SV 1; circular; genomic DNA; STD; VRL; 2748 BP. XX AC FN552001; XX DT 07-JAN-2010 (Rel. 103, Created) DT 07-SEP-2010 (Rel. 106, Last updated, Version 2) XX DE Cotton leaf curl Shadadpur virus, complete genome, isolate Sha XX KW complete genome. XX OS Cotton leaf curl Shahdadpur virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2748 RA Amrao L.; RT ; RL Submitted (17-SEP-2009) to the INSDC. RL Amrao L., Agriculture Biotechnology Division, NIBGE, P.O. Box 577, Jhang RL Road, Faisalabad., 38000, PAKISTAN. XX RN [2] RX DOI; 10.1016/j.virusres.2010.07.003. RX PUBMED; 20621137. RA Amrao L., Akhter S., Tahir M.N., Amin I., Briddon R.W., Mansoor S.; RT "Cotton leaf curl disease in Sindh province of Pakistan is associated with RT recombinant begomovirus components"; RL Virus Res. 153(1):161-165(2010). XX DR MD5; 65a0368c0e33d57c58446be3f0076b65. DR EuropePMC; PMC4872795; 26963635. XX FH Key Location/Qualifiers FH FT source 1..2748 FT /organism="Cotton leaf curl Shahdadpur virus" FT /host="Gossypium hirsutum" FT /isolate="Sha" FT /mol_type="genomic DNA" FT /country="Pakistan:Sindh, Shadadpur" FT /isolation_source="host leaf" FT /collected_by="Luqman Amrao" FT /collection_date="2005" FT /db_xref="taxon:674996" FT CDS 132..488 FT /transl_table=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:D2U4U4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:D2U4U4" FT /protein_id="CBE70750.1" FT /translation="MWDPLLNEFPDTVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL FT ILVIRARNYVEATSRYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQ FT KAQDVQDVQKSRCS" FT CDS 292..1062 FT /transl_table=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:D2U4U5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:D2U4U5" FT /protein_id="CBE70751.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGLCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVAYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(1059..1463) FT /transl_table=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:D2U4U6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D2U4U6" FT /protein_id="CBE70752.1" FT /translation="MDSRTGEPITAAQAGNGAHIWEVPNPLYFKIISHVNRPFTTNMDI FT LTIRIQFNYNTRKALGLHKCFLAFRIWTTLQPQTGLFLRVFKTQVLKYLNNLGVISINL FT VIKAVEHVLYNVIQQTMYVDQYSEIKFNIY" FT CDS complement(1156..1608) FT /transl_table=1 FT /gene="AC2" FT /product="transactivator protein" FT /db_xref="GOA:D2U4U7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D2U4U7" FT /protein_id="CBE70753.1" FT /translation="MRSSSHLIDPCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSIN FT CHNHGLTHRGTHHCSSSREWRTYLGGSKSPLFQDHQPRQPSIHDEYGHTHDQDPVQLQH FT SESSGTAQVFSSLPNLDDLTASDWSFLKGIQNPSPQISEQSRCNFN" FT CDS complement(1505..2593) FT /transl_table=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:D2U4U8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D2U4U8" FT /protein_id="CBE70754.1" FT /translation="MPPKRNGIYSKNYFITYPKCSLTKEEALSQLLNIQTPTSKKYIRI FT CRGLHEDGTPHLHVLIQFEGKFKCQNMRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYID FT KDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQSHN FT LNANLDRIFQEPLAPYISPFSSSSFDQVPEELEEWVSENVVDAAARPHRPQSIVIEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNTALKNWAVKNAIFITLDRPLY FT SGTNQSTAQGSEEAQQEEESRS" FT CDS complement(2137..2439) FT /transl_table=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D2U4U9" FT /protein_id="CBE70755.1" FT /translation="MGLLTCMFSSSSKGNSSARICDSSTWSPQAGQHISIRTYRELNPA FT PTSNPTSTRTGTLSSGESFRSTEGQQEEGNRQPMTLTPQHLTREVSQRLLESLRN" XX SQ Sequence 2748 BP; 725 A; 548 C; 641 G; 834 T; 0 other; accggatggc cgcgcgattt ttttgtgggc cctaccatta actcttgtcg gccaatcata 60 tgacgcgctc aaagcttaaa taattctccc gcctattata agtacttcgt tgctaagtat 120 gcgtttgaaa aatgtgggat ccactgttaa atgagttccc cgacaccgtt cacggtttta 180 ggtgtatgtt agcagttaaa tatttgcagt tagtagagaa aacttactct cctgatacat 240 tgggttacga tttgataagg gatttaatcc tggtaataag ggctaggaat tatgtcgaag 300 cgaccagcag atataatcat ttccacgccc gcttcgaagg tacgccgccg tctcaacttc 360 gacagcccat atgtgagccg tgctgctgcc cccattgtcc gcgtcaccaa agcaaaagca 420 tgggcgaaca ggcccatgaa cagaaagccc aggatgtaca ggatgtacag aagtccagat 480 gttcctagag gatgtgaagg tctatgtaag gttcagtcgt ttgagtccag acatgatatt 540 cagcatatag gtaaagtaat gtgtgttagt gatgttactc gtggtactgg gctgacccat 600 agagttggta agagattttg tgttaagtct gtttatgtgt tgggtaagat ctggatggat 660 gagaacatta agacgaagaa tcacacgaat agtgtgatgt tttttttggt tagagatcgt 720 agacctgttg ataaacctca agattttgga gaggtattta atatgtttga taatgagccc 780 agtacggcga ctgtgaagaa tgttcatcgt gataggtatc aagttctgcg caaatggtat 840 gcaactgtca ccggtggaca atacgcttca aaggaacaag ctctcgtgaa aaaatttatt 900 agagttaata attatgttgc gtataaccag caggaagctg gcaagtatga gaatcattct 960 gagaatgctt taatgttgta tatggcgtgt actcacgcct ctaacccagt gtatgctacc 1020 ttgaagatac ggatctactt ctatgattcc gtgacaaatt aataaatatt gaattttatt 1080 tctgaatatt gatctacata catagtttgt tggattacat tgtacaatac atgttctaca 1140 gctttaataa ctaaattaat tgaaattaca ccgagattgt tcagatattt gaggacttgg 1200 gttttgaata cccttaagaa aagaccagtc tgaggctgta aggtcgtcca gattcggaag 1260 gctagaaaac acttgtgcag tcccagagct ttccgagtgt tgtagttgaa ctggatcctg 1320 atcgtgagta tgtccatatt cgtcgtgaat ggacggttga cgtggctgat gatcttgaaa 1380 taaaggggat ttggaacctc ccagatatgt gcgccattcc ctgcttgagc tgcagtgatg 1440 ggttcccctg tgcgtgagtc catggttgtg gcagttgatt gacagataat aagaacaccc 1500 gcattcaaga tctactctcc tcctcctgtt gcgcctcttc gcttccctgt gctgtacttt 1560 gattggtacc tgagtacagg ggtctatcaa gtgtgatgaa gatcgcattc tttactgccc 1620 agttctttag tgcggtgttc ttttcctcgt ctaggaattc tttataactg ctgtttggac 1680 caggattgca gaggaagatt gttggtatcc cgcctttaat ttgaactggc ttcccgtact 1740 ttgtgttgga ttgccagtcc ctttgggccc ccatgaactc tttaaagtgt ttgagaaaat 1800 gcgggtcgac gtcatcaatg acattatacc aggcgtcgtt actgtagacc ttgggactca 1860 ggtccagatg tccacacaaa tagttatgtg gtcccaatga cctagcccac atcgtcttcc 1920 ccgtacgact atctccttca atcactatac tttgaggtct gtgtggccgc gcagcggcat 1980 cgacaacgtt ttcggagacc cactcttcaa gttcttctgg aacttgatcg aaagaagaag 2040 aagaaaaagg agaaatatag ggagccagtg gctcctgaaa gattctgtct agatttgcat 2100 ttaaattatg agattgtagt acaaaatctt taggagctag ttccttaatg actctaagag 2160 cctctgactt acttcccgcg ttaagtgctg cggcgtaagc gtcattggct gtctgttgcc 2220 ctcctcttgc tgaccttccg tcgatctgaa actctcccca ctcgagagtg tccccgtcct 2280 tgtcgatgta ggatttgacg tcggagctgg atttagctcc ctgtatgttc ggatggaaat 2340 gtgctgacct gcttggggag accaagtcga agaatcgcat attctggcac ttgaatttcc 2400 cttcgaactg gatgagaaca tgcaagtgag gagtcccatc ttcgtgaagc cctctgcaga 2460 ttctaatata tttttttgaa gttggggttt gtatatttaa taattgggaa agtgcttcct 2520 ctttggtgag agaacatttg ggataagtga tgaaatagtt tttggaataa ataccgttcc 2580 gctttggagg catgttgact aaaattgatc accgattgac cgcacttgca actctccccg 2640 gtatatcggt gatcaatata tagtgatcac caaatggcat aatggtaata aaaaaacttt 2700 aatttgaaat tcaaaccaaa aggctaaagc ggccatccgt ttaatatt 2748 //