ID FN435309; SV 1; circular; genomic DNA; STD; VRL; 2736 BP. XX AC FN435309; XX DT 07-AUG-2011 (Rel. 109, Created) DT 07-AUG-2011 (Rel. 109, Last updated, Version 1) XX DE Tomato leaf curl New Delhi virus [Pakistan:Solanum:2009] complete segment DE DNA-A, clone MS1 XX KW . XX OS Tomato leaf curl New Delhi virus [Pakistan:Solanum:2009] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2736 RA Shahid M.S.; RT ; RL Submitted (07-AUG-2009) to the INSDC. RL Shahid M.S., Agriculture Biotechnology Division, National Institute for RL Biotechnology and Genetic Engineering, NIBGE, Jhang Road, Faislabad, 38000, RL PAKISTAN. XX RN [2] RA Shahid M.S., Nahid N., Briddon R.W., Mansoor S.; RT "Synergism with betasatellite and prevalent strains influence symptoms RT induced by Tomato leaf curl New Dehli virus, a bipartite begomovirus"; RL Unpublished. XX DR MD5; 581a40c19c0adc9f3f8216826883ec18. XX FH Key Location/Qualifiers FH FT source 1..2736 FT /organism="Tomato leaf curl New Delhi virus FT [Pakistan:Solanum:2009]" FT /segment="DNA-A" FT /host="Solanum lycopersicum" FT /mol_type="genomic DNA" FT /country="Pakistan:Faisalabad" FT /isolation_source="host leaf" FT /collected_by="Muhammad Shafiq Shahid" FT /clone="MS1" FT /db_xref="taxon:665442" FT CDS 41..397 FT /gene="v3" FT /product="V3 protein" FT /function="movement" FT /db_xref="UniProtKB/TrEMBL:G0KYR9" FT /protein_id="CBA13456.1" FT /translation="MKFTLHGLYNAGGPINRLAHQVWIHKHVGSIIARISRKRSWSEVH FT ASCKISPRDRKELFPRHGRLRSCPRSHSCSPGKELWRSDQQISSFQRPHRKYADVSTSA FT AHTRAVLLPPLSAS" FT CDS 120..458 FT /gene="v2" FT /product="movement protein" FT /db_xref="GOA:G0KYS4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:G0KYS4" FT /protein_id="CBA13457.1" FT /translation="MWDPLLHEFPESVHGLKCMLAVKYLQEIEKNYSPDTVGYDLVRDL FT ILVLRAKNYGEATSRYHHFNARIESTPTSQLRQPIRVPCCCPHCPRHKSKGLDQQADEQ FT KTQNVQNV" FT CDS 280..1050 FT /gene="cp" FT /product="coat protein" FT /db_xref="GOA:G0KYS0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:G0KYS0" FT /protein_id="CBA13458.1" FT /translation="MAKRPADIIISTPASKVRRRLNFGSPYACRVAAPIVRVIKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVTFFLVRDRRPTGSPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(310..795) FT /gene="c5" FT /product="C5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:G0KYS1" FT /protein_id="CBA13459.1" FT /translation="MHVLHRCCARFIVKHIKHFPKILGRSCRTTVTNQKKRDTVSMVFC FT LDVFIHPYLSQHVDGFHTESLPYAMCESSSSGNITNTHDFANMRDIVPRLKGLHFTRAF FT TAPWHVGTSIHSVHSGFSVHRPVGPGLCFYDADNGGSNTARVWAAEVETSAYFRCGR" FT CDS complement(1047..1457) FT /gene="c3" FT /product="replication enhancer protein" FT /db_xref="GOA:G0KYS5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G0KYS5" FT /protein_id="CBA13460.1" FT /translation="MVTDSRTGEYITADRAESGVYTWEIRNPLYFKILQHDSRPFLTQH FT DIIKIQIQFNNNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLKYLDMLGVIGI FT YNVIRAVYHVLDNVMEQTIDVWTSYDIKLDIY" FT CDS complement(1177..1593) FT /gene="trAp" FT /product="transcriptional activator protein" FT /db_xref="GOA:G0KYS2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:G0KYS2" FT /protein_id="CBA13461.1" FT /translation="MQSSSHSKNHSIPVAKTSLPQKKKSIRRRRVDLPCGCSYYISINC FT HGHGFTHRGIHHCGSSREWRIYLGNSKSPVFQNFATRQQALPNTARHNQDSNTIQQQPA FT ESPGTSQVFSNFQNLDGLTPSDWDFLESLQNPGP" FT CDS complement(1499..2581) FT /gene="c1" FT /product="replication associated protein" FT /function="replication" FT /db_xref="GOA:G0KYS6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G0KYS6" FT /protein_id="CBA13462.1" FT /translation="MASPRRFRVNAKNYFLTYPKCSLTKEEALSQLQTLETPTKKKFIK FT ICKELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKNYI FT AKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKDDALRVLKELAPKDYVLQFH FT NLNTNLDRIFQPPSEVYVSPFSISSFDRVPPELVDWVSSNVVCAAARPFRPISIVIEGD FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPL FT YSGRENIAPAEEEEHSQEAS" FT CDS complement(2248..2424) FT /gene="c4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:G0KYS3" FT /protein_id="CBA13463.1" FT /translation="MGLRISMFSSNSKGNSSAKIIDSSTWFPQVGQHISIRTFRELNQR FT RTSKTTSPKMETF" XX SQ Sequence 2736 BP; 747 A; 587 C; 611 G; 791 T; 0 other; accgaatggc cgcgcaaatt tttaggtggg ccctcaacca atgaaattca cgctacatgg 60 cttatataat gcggggggac caataaatag acttgctcac caagtttgga tccacaaaca 120 tgtgggatcc attattgcac gaatttccag aaagcgttca tggtctgaag tgcatgctag 180 ctgtaaaata tctccaagag atagaaaaga actattcccc agacacggtc ggctacgatc 240 ttgtccgaga tctcattctt gttctccggg caaagaacta tggcgaagcg accagcagat 300 atcatcattt caacgcccgc atcgaaagta cgccgacgtc tcaacttcgg cagcccatac 360 gcgtgccgtg ttgctgcccc cattgtccgc gtcataaaag caaaggcctg gaccaacagg 420 ccgatgaaca gaaaacccag aatgtacaga atgtatagaa gtcccgacgt gccaaggggc 480 tgtgaaggcc cttgtaaagt gcagtccttt gagtctaggc acgatgtctc tcatattggc 540 aaagtcatgt gtgttagtga tgttacccga ggaactggac tcacacatcg cgtagggaag 600 cgattctgtg tgaaatccgt ctacgtgctg ggaaagatat ggatggatga aaacatcaag 660 acaaaaaacc atactaacag tgtcacgttt tttctggttc gtgaccgtcg tcctacagga 720 tctccccaag attttgggga agtgtttaat atgtttgaca atgaaccgag cacagcaacg 780 gtgaagaaca tgcatcgtga tcgttatcaa gtcttacgga agtggcatgc tactgtgacg 840 ggaggaacat atgcatctaa ggagcaagca ttagttagga agtttgttag ggttaataat 900 tatgttgttt ataatcaaca agaggccggc aagtatgaga atcatactga aaacgcatta 960 atgttgtata tggcctgtac tcacgcatca aatcctgtat atgctacttt gaaaatccgg 1020 atctatttct atgattcggt cacaaattaa taaatatcga gctttatatc atatgaagtc 1080 catacatcaa tcgtttgctc cattacatta tccaatacat gataaactgc tcttattaca 1140 ttataaatgc ctattacacc taacatatcc aggtacttaa ggacctgggt tttgaagact 1200 ctcaagaaaa tcccaatctg agggcgtaag cccgtccaga ttttgaaagt tagaaaacac 1260 ttgtgaagtc ccagggcttt ccgcaggttg ttgttgaatt gtatttgaat cttgattatg 1320 tcgtgctgtg ttaggaaggg cctgctgtcg tgttgcaaaa ttttgaaata caggggattt 1380 cgaatttccc aggtatatac gccactctct gctcgatccg cagtgatgta ttcccctgtg 1440 cgtgaatccg tgaccatggc agttgattga tatgtaatac gaacaaccac acggcagatc 1500 aactcgcctc ctgcgaatgc tcttcttctt ctgcgggagc gatgttttcg cgaccggaat 1560 agagtggttc ttcgagtgtg atgaagactg cattcttgat tgcccactgc ttcaatgctg 1620 catttttttc ttcgtccaga tattccttat agctgctatt tggaccttta ttgcacagga 1680 agatagtggg aattccacct ttaatcatga ctggctttcc gtacttcgtg ttgctttgcc 1740 agtcacgctg ggcccccatg aattctttaa aatgctttag atagtgggga tcaacgtcat 1800 caatgacgtt gtaccaggct tcattgctat agacctttgg gctcagatca agatgtccac 1860 acaagtaatt gtggggtcct aaacatcgag cccacattgt tttgcccgtt ctactatccc 1920 cctcaatgac tatgcttatg ggcctaaaag gccgcgcagc ggcacacacc acattggacg 1980 agacccaatc gacgagttct ggcggaactc tgtcgaagga tgaaattgaa aatggagaaa 2040 cataaacctc ggaaggaggt tgaaaaatac gatctaaatt ggtatttaaa ttgtgaaact 2100 gcagaacgta atcttttggg gctaattcct ttaatactct caaagcatcg tctttatttc 2160 ccgtgttaat cgcctgggca tatgcatcgt tcgccgtttg ttgaccacca cgggcagatc 2220 gtccatcgat ctggaaaaca ccccattcta gaacgtctcc atctttggcg atgtagtttt 2280 tgacgtccga cgctgattta gctccctgaa tgttcggatg gaaatgtgct gaccgacttg 2340 gggaaaccaa gtcgaagaat ctattatttt tgcactggaa tttcccttcg aattggatga 2400 gaacatggat atgcggagac ccatcttcgt gaagctcttt acagatcttg atgaatttct 2460 tcttcgtcgg ggtttctagg gtttgcaatt gggaaagtgc ctcttcttta gttagagagc 2520 actttggata tgtgaggaaa tagtttttgg catttactct aaaacgacgt ggcgaagcca 2580 taaaacttgt cgttttgatt cggcgtctct caacttatct atgtgattgg tgtctggagt 2640 cctatatata ggtaagacac catatggcat tattgtaatt ttgaaaagaa aattacttta 2700 attcaaattc cctaaagcgg ccattcgtat aatatt 2736 //