ID FN432361; SV 1; circular; genomic DNA; STD; VRL; 2747 BP. XX AC FN432361; XX DT 27-APR-2010 (Rel. 104, Created) DT 27-APR-2010 (Rel. 104, Last updated, Version 1) XX DE Alternanthera yellow vein virus segment DNA-A, complete sequence XX KW . XX OS Alternanthera yellow vein virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2747 RA Tahir M.N.; RT ; RL Submitted (22-JUL-2009) to the INSDC. RL Tahir M.N., Agricultural Biotechnology Division, National Institute for RL Biotechnology and Genetic Engineering, NIBGE, Jhang Road, Faisalabad, RL Punjab, 38000, PAKISTAN. XX RN [2] RX DOI; 10.1007/s11262-010-0470-y. RX PUBMED; 20306125. RA Mubin M., Shahid M.S., Tahir M.N., Briddon R.W., Mansoor S.; RT "Characterization of begomovirus components from a weed suggests that RT begomoviruses may associate with multiple distinct DNA satellites"; RL Virus Genes 40(3):452-457(2010). XX DR MD5; 0e8c09eedd60b77a141a51ab9b911c23. XX FH Key Location/Qualifiers FH FT source 1..2747 FT /organism="Alternanthera yellow vein virus" FT /segment="DNA-A" FT /host="Sonchus arvensis" FT /mol_type="genomic DNA" FT /country="Pakistan:Faisalabad, Samundri" FT /isolation_source="host leaf" FT /identified_by="Muhammad Mubin" FT /db_xref="taxon:337826" FT CDS 154..498 FT /gene="AV2" FT /product="precoat protein" FT /db_xref="GOA:D5GQ91" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:D5GQ91" FT /protein_id="CBA10391.1" FT /translation="MWDPLLNPFPQTVHGFRCMLSVKYLQVVEDTYAPDTLGADLIREL FT IAVIRANNYVEACSRYDHFIKRLEGTSSSQLRQPYGSPCFCPPDCPCHSKTAVVEPPHV FT SQAKVVPNVQ" FT CDS 314..1087 FT /gene="AV1" FT /product="capsid protein" FT /db_xref="GOA:D5GQ92" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:D5GQ92" FT /protein_id="CBA10392.1" FT /translation="MSKRAADMIISSSGSRVRRRLNFDSPMARRASAPRIVRATRRQQW FT SSRPMYRKPRLYRMYSSPDVPYGCEGPCKVQSFEKEHDVSHTGTLSCVSDVTRGSGITH FT RVGKRFCIKSIYIIGKIWMDENIKSKNHTNTVMFWLVRDRRPVTTPYGFGEAFNMYDNE FT PSTATIKNDLRDRLQVLHRFSATVTGGQYASKEQAMIKRFWRINNHVVYNHQEKAAYEN FT HTENALVLYMACTHASNPVYATLKIRMYFYDSVMN" FT CDS complement(1084..1488) FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:D5GQ95" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D5GQ95" FT /protein_id="CBA10395.1" FT /translation="MDSRTGEYITAAQAENGVYTWEITIPLYFKIIKHDSRSFLREHDI FT ITVQIQFNYNLRKALGIHKCFLTCQIWTRLQPQTLSFLRVFKTQVMKYLDNLGVICLNN FT VIRAINHVLWNALHHTLYVNFSHIIKFNIY" FT CDS complement(1229..1633) FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:D5GQ94" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D5GQ94" FT /protein_id="CBA10394.1" FT /translation="MRPSSPSTSHCTQVRIKVQHRLAKRKPRRRRVDLRCGCSLYISID FT CHNYGFTHRGVHHCSSGREWRVYLGNNHSPVFQDHQTRQQVIPTGTRHHHSSDTVQLQP FT AEGFGDTQMFSDLPDLDSLTTSDIEFLKGL" FT CDS complement(1536..2621) FT /gene="Rep" FT /product="Rep protein" FT /db_xref="GOA:D5GQ93" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D5GQ93" FT /protein_id="CBA10393.1" FT /translation="MRQPGQFRLNRKNLFLTYSQCPISKEQALQQILNTQTPVNKKFIR FT VCRELHEDGNPHLHALVQFEGKFQLTNPRFFDLQSPNSSAQYHCFITDAKSSSDVKAYI FT EKDGDILDWGTFQIDGRSARGGQQTANDAYARAINTGNKEQALDVIRELAPKDYVLQFH FT NLNGNLERIFMPPTQEYISPFNCSSFDQVPEEIEEWAADNVMSAAARPWRPISIVIEGD FT SRTGKTMWARSLGPHNYLCGHIDLSPRVYSNEAWYNIIDDVDPHYVKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKNIGLKNWALKNATFVTINQPL FT YSGSHQSPAQASQEETSQTEG" FT CDS complement(2174..2470) FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D5GQ96" FT /protein_id="CBA10396.1" FT /translation="MRMETLISMLLCNSRGNSNSRIRDSSTYSHPIPPPNTTASSPMLS FT PVQTLRHTSRRMETYLTGVPSRLMEGLQEGDSRQQTMLTQEQLTQAIRNKLLM" XX SQ Sequence 2747 BP; 693 A; 568 C; 642 G; 844 T; 0 other; accgatggcc aaaaaaaaat ttatgtcggc cccacctggc agcttttgtc tgccactaga 60 caatccggtc caatcagatt tcagtctgaa agcttaaata aaattggcgc gccctttaaa 120 tgcttggccg ctacgtttag tgcgctgtgc actatgtggg atcctctttt gaacccgttt 180 ccccagaccg tgcacggctt tcgttgcatg ctttctgtaa agtatttaca ggtcgttgaa 240 gacacatacg ctcctgatac tttaggtgct gatttaatta gagagttaat tgcagtaatt 300 agggccaata attatgtcga agcgtgcagc cgatatgatc atttcatcaa gcggctcgag 360 ggtacgtcgt cgtctcaact tcgacagccc tatggctcgc cgtgcttctg ccccccggat 420 tgtccgtgcc actcgaagac agcagtggtc gagccgcccc atgtatcgca agccaaggtt 480 gtaccgaatg tacagtagcc ctgatgtgcc ttatggctgt gagggtccgt gtaaggtcca 540 gtcatttgaa aaagaacatg acgttagtca tactggcacg ttgtcgtgtg tctctgatgt 600 taccagaggt agtgggatta cgcatagagt agggaagcgt ttttgcatca agtcaattta 660 catcataggg aagatatgga tggatgagaa cattaagtcc aagaatcata ctaacacggt 720 catgttctgg ttagttaggg atcgccgccc agttacaacg ccttatggct ttggtgaggc 780 gtttaatatg tatgacaatg agccctctac cgcaactatc aagaacgatc tgcgtgatcg 840 tttgcaggtg ttacataggt tttctgccac agttactggg ggtcagtatg cgtctaagga 900 gcaggctatg atcaagcgtt tctggaggat taacaaccat gttgtttaca accatcagga 960 gaaggcagct tatgaaaatc atactgagaa tgcattagta ttgtatatgg cttgtactca 1020 tgctagcaat cctgtgtatg ctacgctgaa aattagaatg tatttctatg actctgtaat 1080 gaattaatat atattgaatt ttattatatg actgaagttt acatacaaag tatggtgcaa 1140 tgcattccat agtacatgat ttattgctct aattacattg ttaagacaaa ttacaccaag 1200 attatctaaa tacttcataa cttgggtctt aaagaccctt aagaaactca atgtctgagg 1260 ttgtaagcga gtccagatct ggcaagtcag aaaacatttg tgtatcccca aagccttccg 1320 caggttgtag ttgaactgta tctgaactgt gatgatgtcg tgttcccgta ggaatgacct 1380 gctgtcgtgt ttgatgatct tgaaatacag gggaatggtt atttcccagg tatacacgcc 1440 attctctgcc tgagctgcag tgatgtactc ccctgtgcgt gaatccatag ttgtgacagt 1500 cgatggagat gtatagtgaa cagccgcaac gcagatcaac cctccgtctg cgaggtttcc 1560 tcttggctag cctgtgctgg actttgatgc gaacctgagt acagtggctg gttgatggtg 1620 acgaaggtcg cattctttag ggcccagttt tttagaccta tgtttttctc ctcatcaagg 1680 aactctttat aggaggatgt cggaccagga ttgcagagga agattgttgg gatcccgcct 1740 ttaatttgaa cgggcttccc gtatttagta ttggactgcc aatccctttg ggcccccatg 1800 aattccttga aatgtttcac gtaatgagga tctacatcgt ctattatgtt ataccaggcc 1860 tcattgctgt aaaccctagg actaaggtca atatgaccac ataggtaatt atgtggacct 1920 aatgatctag cccacattgt tttaccagtc ctgctgtcac cttctatgac tatacttatt 1980 ggtctccagg gccgcgcagc ggcagacatg acattgtctg cggcccattc ctcaatttcc 2040 tcagggacct gatcaaacga tgaacaatta aaaggactaa tgtattcttg ggtgggaggc 2100 atgaatatgc gctccagatt accatttaaa ttatgaaatt gtaatacata atccttagga 2160 gctaactctc ttattacatc aagagcttgt tccttattgc ctgtgttaat tgctcttgcg 2220 taagcatcgt ttgctgtctg ctgtccccct cttgcagacc ttccatcaat ctggaaggta 2280 ccccagtcaa gtatgtctcc atccttctcg atgtatgcct taacgtctga actggactta 2340 gcatcggtga tgaagcagtg gtattgggcg gaggaattgg gtgactgtag gtcgaagaat 2400 ctcggattcg tgagttggaa tttcccctcg aattgcacaa gagcatggag atgagggttt 2460 ccatcctcat gtagttctct gcaaacccta atgaatttct tgtttacagg ggtttgtgtg 2520 tttaggattt gctgtaatgc ctgttcttta gagatagggc attgtgagta ggtgaggaag 2580 aggttttttc tatttaatct aaattgccca ggctgacgca tgatgacgtt tgtttacacc 2640 cgatgggagc tcttctaaaa ctctatgtca atgggtgtat aggtgtgtat tatatagtgg 2700 ggatttttcc ggaataaaaa attttttttt ggccatcgtc taatatt 2747 //