ID FM242700; SV 1; linear; genomic RNA; STD; VRL; 4152 BP. XX AC FM242700; XX DT 12-OCT-2009 (Rel. 102, Created) DT 28-AUG-2015 (Rel. 125, Last updated, Version 2) XX DE Tobacco bushy top virus complete genome, isolate YMDu1 XX KW complete genome. XX OS Tobacco bushy top virus OC Viruses; Riboviria; Tombusviridae; Calvusvirinae; Umbravirus. XX RN [1] RP 1-4152 RA Li F.; RT ; RL Submitted (10-OCT-2008) to the INSDC. RL Li F., Department of Phytopathology, Yunnan Agricultural University, Key RL Laboratory for Plant Pathology of Yunnan Province, Kunming, 650201, Yunnan RL Province, CHINA. XX RN [2] RA Li F., Wei W., Chen H.R., Wu D.X.; RT "Complete nucleotide sequence and genome organization of YWDu isolate of RT tobacco bushy top virus"; RL Unpublished. XX DR MD5; 9bf226794dda559224ee19baf805c3eb. DR EuropePMC; PMC4514990; 26209518. XX FH Key Location/Qualifiers FH FT source 1..4152 FT /organism="Tobacco bushy top virus" FT /isolate="YMDu1" FT /mol_type="genomic RNA" FT /country="China:Yunnan, Dali, Midu" FT /db_xref="taxon:184020" FT 5'UTR 1..10 FT CDS join(11..952,952..2607) FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="ORF1-ORF2" FT /db_xref="GOA:C9WXA1" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:C9WXA1" FT /protein_id="CAR85737.2" FT /translation="MEFMNNVKRLLTMDFRPAKGVATREELRRAYDPTWELLITQARVT FT SEVARQCEDWYTLAVPTTYRLPELAVEEAVREKSIAREVADRCLPDDPSPVAAQGPSPA FT CLAESSTDSSTDAEPNGADEILGLPRPDTQFLPPWVERRYKALARHCPKDYTNWQIIPY FT SGGPRILTEEDVLPVAEGVILLPPPPSKPTVLDTLRGLITRLSRVAGGVRSRPSTTRKE FT PTAICVGVEQVAGEPMAYMNAHSVAMELRARYGVQPSTAANLQLGNRVAREILEKQCGA FT TRDMVFILGHLATTLWFTPTVVDLALQCGPKDFLLGDVVARRGVETKVKTNIHPKIRVL FT RAARPRPVERVSYQIDVVRPCADFGVHNNSLNNLIRGVNERVFYTDHKRKEPRRPSAGS FT FDKIDTSEIRAFRVQPWTLEEVVNSYSGSQKVRYGQAVESLAVTPLSRNDARVKTFVKA FT EKINFTAKPDPAPRVIQPRDPRFNACFAKYTKPLEPLLYKQLGKLYQFPCIAKGFNAVE FT TGEIIAKKWKCFGDPVCVGLDASRFDQHVSCDALRFTHSIYKRFVKGREVNKLLSWMYR FT NHALGSAKDGFVKYEVEGCRMSGDMDTALGNCVLMVMMTRQLCKNLSIPHELMNNGDDC FT IVIFDRRHLTTFRNAVEPFFQELGFTMKVEEPVYHLERVDFCQTRPVYDGKKWRMVRHI FT SSIAKDCCSVIDWEQLPAWWNAIGECGIAVAGGIPIHNSFLRWLLRSGESNPDLLKHGA FT WKNEGLAWYRMGMDLSHERHVSDEARASFHTAFGIEPSMQVALEQIYDSLPAPTIGGKR FT ARVCKPGEMVLVDSLPPRHFNDYFQDVGIGGSSSDYVVPGTHEFEPGTLWTQC" FT CDS 11..958 FT /product="hypothetical protein" FT /note="ORF1" FT /db_xref="UniProtKB/TrEMBL:C9WXA0" FT /protein_id="CAR85736.1" FT /translation="MEFMNNVKRLLTMDFRPAKGVATREELRRAYDPTWELLITQARVT FT SEVARQCEDWYTLAVPTTYRLPELAVEEAVREKSIAREVADRCLPDDPSPVAAQGPSPA FT CLAESSTDSSTDAEPNGADEILGLPRPDTQFLPPWVERRYKALARHCPKDYTNWQIIPY FT SGGPRILTEEDVLPVAEGVILLPPPPSKPTVLDTLRGLITRLSRVAGGVRSRPSTTRKE FT PTAICVGVEQVAGEPMAYMNAHSVAMELRARYGVQPSTAANLQLGNRVAREILEKQCGA FT TRDMVFILGHLATTLWFTPTVVDLALQCGPKDFC" FT CDS 2757..3470 FT /product="hypothetical protein" FT /note="ORF3" FT /db_xref="InterPro:IPR006902" FT /db_xref="UniProtKB/TrEMBL:C9WXA2" FT /protein_id="CAR85738.1" FT /translation="MSTIINVNTHPQGRYGRGAAQRSIRGSDVKGARGIKPRRSNPPSG FT RKQGGNDPTAATQKSRKNRQRPETVPPHETHGGTFIHREGCGGVHAPHPGRCWRRGRNL FT GPRQHATTPKQRWAPRKISDERRAQVDSILSPLLDTLKLSSEGGAPELLHCIGVLRREL FT RRRREPVQPVHNVGTEDRVRSAQLSDEAPQSNANLQTSGEGQSVLPNPDSGGTEKCNVE FT SVCNNCDRAPTTNKW" FT CDS 2773..3507 FT /product="hypothetical protein" FT /note="ORF4" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/TrEMBL:C9WXA3" FT /protein_id="CAR85739.1" FT /translation="MSTLIHKADTEEELLNALYGEVTLRELEESNLGVLTPHRAENKVV FT MTPLLPPRSQGRIASVLKRFRPTKHTGGLLFIEKVVVVFTPHIPDDAGGEVEILVHDNM FT LPHLNSVGPRVRFPMSGGPRLIAFYPPYSIPLSCQVRGAPRSYFIVSEYSGVNFVAGAS FT PFSLYIMWEPKIECVAHNYLMRPPKAMPICRHLVKDSLSSLTLTQGALKSAMSNRYATT FT ATGLPPPTSGEQDMEVVSHPPG" FT 3'UTR 3508..4152 XX SQ Sequence 4152 BP; 996 A; 1086 C; 1193 G; 877 T; 0 other; aggttacgat atggagttca tgaacaacgt caagcgattg ctgacaatgg atttcaggcc 60 cgcaaagggc gtagcgactc gtgaggagct ccgtagagct tatgatccca cgtgggagct 120 cctcatcact caagcccgag tcacgtctga agtggctcgg caatgcgagg attggtacac 180 cctagctgtg ccaaccacct accgccttcc agagttggcg gtggaagagg cagtgcgcga 240 aaagtctata gcgcgtgagg tggcagatcg gtgcctccct gatgacccgt cccctgtcgc 300 cgcgcagggg ccgtcgcctg cctgcctggc tgagagctca acagactcca gcacagatgc 360 cgagcccaat ggggccgacg agattctggg gctacctagg ccagacaccc agttcttacc 420 accgtgggtt gagaggcgtt acaaagcgtt ggctcgccac tgcccgaagg attataccaa 480 ctggcagatc ataccatact ccggtggccc acgcattctc actgaagagg atgtgttgcc 540 tgttgcggaa ggcgtgatcc ttctgccccc gcccccatca aagcctacag tactggacac 600 gttgcgggga ttgattaccc gcctctctag agtggcaggg ggggtgagga gtaggccgag 660 caccacacga aaggagccca ctgccatctg cgttggagtc gagcaggtgg ccggcgaacc 720 catggcgtac atgaatgccc actccgtagc catggagttg cgggcgaggt atggggttca 780 gccctctaca gctgctaacc tgcagcttgg aaaccgggtg gccagggaga tcctggaaaa 840 gcaatgcgga gccacccgtg acatggtgtt catcttgggg cacctcgcca ccaccttgtg 900 gttcactccc accgtggtgg acttggccct ccaatgtggg cccaaggatt tttgctaggg 960 gacgtagtcg ctcggagggg tgttgaaaca aaagtgaaaa ccaatatcca ccccaagatc 1020 cgagtgctca gagcggcacg cccccgaccc gtagaaagag tgtcgtacca aatcgacgtg 1080 gtacggccct gcgctgactt tggtgtccac aacaactccc ttaataattt gatacgggga 1140 gttaatgagc gggtgttcta cacagaccac aagaggaaag agccccgcag gccttcagct 1200 ggtagttttg acaagattga caccagcgaa attagagcat tcagggttca accgtggacc 1260 ctcgaggagg tcgtcaatag ctactcaggt agccagaagg tgaggtatgg ccaggctgtc 1320 gagtcgttag ccgtcacgcc cctctctaga aacgatgccc gggtcaaaac gtttgttaag 1380 gcagaaaaga tcaactttac cgccaagccc gacccggccc ctcgcgtaat ccagccgcgg 1440 gatccaaggt tcaatgcttg ctttgctaaa tatacaaagc ccttggaacc cctattgtac 1500 aagcagctgg gcaagctcta ccagttcccg tgcatcgcaa agggcttcaa tgccgtagaa 1560 accggtgaga taatagctaa gaagtggaag tgctttggcg accctgtctg tgtgggttta 1620 gacgcctccc ggtttgacca acatgtgtca tgcgatgcac tacggttcac ccacagcatt 1680 tacaagagat tcgtcaaggg cagggaagtt aacaaattac tttcctggat gtataggaat 1740 catgctttgg gtagtgcgaa ggacggattc gtcaagtatg aggtggaggg atgccgcatg 1800 agcggagaca tggacactgc cttgggcaac tgcgtcctga tggtcatgat gaccaggcag 1860 ttatgcaaaa acctctctat accgcacgaa ctgatgaata atggggatga ctgcatcgtg 1920 atatttgaca ggcgtcactt gactaccttt cggaatgcag ttgaaccatt ctttcaggaa 1980 ctgggtttta cgatgaaggt cgaggagccg gtctaccacc ttgaacgagt agacttttgc 2040 cagacccgcc ccgtgtatga cggcaagaag tggagaatgg tcaggcatat ctcaagtata 2100 gcgaaggatt gctgttcagt cattgactgg gaacagttac cggcttggtg gaacgccatt 2160 ggagaatgtg gcattgccgt ggctggtggt atacccatac acaacagctt cttgagatgg 2220 ctcctgagat caggtgagag caaccctgat ctcctgaagc atggcgcatg gaaaaatgag 2280 ggcctagcgt ggtaccggat gggcatggac ctatcccatg agagacacgt tagtgatgaa 2340 gcgcgcgcca gcttccacac tgcctttgga atcgaaccat ccatgcaggt cgcattagag 2400 cagatctatg actcattgcc tgctcccacc attggtggga aacgagccag agtgtgtaaa 2460 cctggtgaaa tggtattggt tgattcactc ccaccgcggc actttaatga ttacttccag 2520 gatgttggaa taggggggag tagcagtgat tacgttgtcc cggggaccca cgagttcgaa 2580 ccggggacgt tgtggacaca atgctagtca attgagtcag ccaggcatat ggttgcaagc 2640 gctggggact tagtccataa aaccactggt aaagagcctc cagtaggcag gcccgccttg 2700 atgagtctta acgagtggac acccgggtag ccgcggacaa tgcccgacgg gtttcaatgt 2760 ctacgatcat aaatgtcaac actcatccac aaggcagata cggaagagga gctgctcaac 2820 gctctatacg gggaagtgac gttaagggag ctcgaggaat caaacctcgg cgttctaacc 2880 ccccatcggg ccgaaaacaa ggtggtaatg accccactgc tgccacccag aagtcaagga 2940 agaatcgcca gcgtcctgaa acggttccgc cccacgaaac acacgggggg acttttattc 3000 atagagaagg ttgtggtggt gttcacgccc cacatcccgg acgatgctgg cggagaggta 3060 gaaatcttgg tccacgacaa catgctacca cacctaaaca gcgttgggcc ccgcgtaaga 3120 tttccgatga gcggagggcc caggttgata gcattttatc ccccctactc gataccctta 3180 agttgtcaag tgaggggggc gccccggagc tacttcattg tatcggagta ctccggcgtg 3240 aacttcgtcg caggcgcgag cccgttcagc ctgtacataa tgtgggaacc gaagatagag 3300 tgcgtagcgc acaactatct gatgaggccc cccaaagcaa tgccaatttg cagacatctg 3360 gtgaaggaca gtctgtcctc cctaaccctg actcaggggg cactgaaaag tgcaatgtcg 3420 aatcggtatg caacaactgc gaccgggctc ccaccaccaa caagtggtga gcaggatatg 3480 gaggtagtgt cccatcctcc aggctaaatt ggacacaaaa cggagctaga tttagtgttg 3540 caattgctag accgttagcc actacgccag acagtgcgat aactgaggtc gtctatgacc 3600 cacagggtgc catcctgtgc aatttccaac ccttggcagg ggtgatccta gaggacgcgg 3660 gcattgactt gcctggggat gcttctagtt acataccgga gtggttgata gacctctgtg 3720 taaggaaaca ggtgtgagac tggatcctgg gaaacaggct gggatggtcc cgtaagttcg 3780 ggcggtgccc ttcgggggta accccaccgc cgacgtatca cctcacacgc tgttggccga 3840 taagccgagg tgttggaacc gcaccactct ggaggttccc tctccttatg aggtggaggc 3900 acagcacgcc ttaagtgtct gcgatccggc gttcacgtgc cggtggtccc cctagttaac 3960 gtggtgccac agtctgtggt aggggcagct ggtcggattc cagcagaaac caagtagcaa 4020 atggacgctg ctacctcgag cctagagtca tgggcccgca tcgacgtttg cggtaactca 4080 cagcgggcga taatagctgt tgagaatgtc ggttcctgac ttagcgggag atgagcactt 4140 tctctcgcgc cc 4152 //