ID FM179613; SV 1; circular; genomic DNA; STD; VRL; 2754 BP. XX AC FM179613; XX DT 25-FEB-2009 (Rel. 99, Created) DT 25-FEB-2009 (Rel. 99, Last updated, Version 1) XX DE Chilli leaf curl Multan virus segment A, complete sequence XX KW complete genome. XX OS Chilli leaf curl Multan virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2754 RA Mubeen M.; RT ; RL Submitted (08-JUL-2008) to the INSDC. RL Mubeen M., Plant Biotechnology, NIBGE, P.O. Box 577, Jhang Road Faisalabad, RL Punjab, 38000, PAKISTAN. XX RN [2] RX DOI; 10.1007/s00705-008-0296-2. RX PUBMED; 19123046. RA Mubin M., Briddon R.W., Mansoor S.; RT "Complete nucleotide sequence of chili leaf curl virus and its associated RT satellites naturally infecting potato in Pakistan"; RL Arch. Virol. 154(2):365-368(2009). XX DR MD5; 7825b4755c059b6e18d60b300506523e. XX CC related entries: FM179614; FM179615 XX FH Key Location/Qualifiers FH FT source 1..2754 FT /organism="Chilli leaf curl Multan virus" FT /segment="A" FT /host="Solanum tuberosum" FT /mol_type="genomic DNA" FT /country="Pakistan:Punjab" FT /isolation_source="host leaf" FT /collected_by="Muhammad Mubeen" FT /clone="Pot1" FT /db_xref="taxon:546025" FT CDS 146..502 FT /gene="av2" FT /product="precoat protein" FT /db_xref="GOA:C0M628" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:C0M628" FT /protein_id="CAQ77150.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKHLQLLENTYSPDTLGYDLIRDL FT ISVIRAKNYVQATSRYNHFHARLEGTPPSQLRQPLCQPCCCPHCPRHKGQSMGEQAHEQ FT EAQDVQDVQKSRCS" FT CDS 306..1076 FT /gene="av1" FT /product="coat protein" FT /db_xref="GOA:C0M629" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:C0M629" FT /protein_id="CAQ77151.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPTVRVTKARAWV FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVFNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT CDS complement(1073..1477) FT /gene="ac3" FT /product="replication enhancer protein" FT /db_xref="GOA:C0M630" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:C0M630" FT /protein_id="CAQ77152.1" FT /translation="MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNRPFLRSRDL FT ITVQIQFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFKTQVLQFLNNFAVISINN FT VIRAVDHVLWNVLHNIVYVQQSYSIKFNLY" FT CDS complement(1218..1622) FT /gene="ac2" FT /product="transcriptional activator protein" FT /db_xref="GOA:C0M631" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:C0M631" FT /protein_id="CAQ77153.1" FT /translation="MRPSSPSQAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSGREWRVYLGDNKSPVFQDNRAPQQAIPEEPRPHHRADTVQSQP FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI" FT CDS complement(1561..2610) FT /gene="ac1" FT /product="replication associated protein" FT /db_xref="GOA:C0M632" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:C0M632" FT /protein_id="CAQ77154.1" FT /translation="MPRAGRFNINAKNYFLTYPNCSLTKEEALSQLQNLETPVNKLFIR FT VCRELHENGEPHLHVLIQFEGKYQCTNNRFFDLISPTRSANFHPNIQRAKSSSDVKAYV FT EKDGDFIDFGVFQIDGRSARGGCQSANDAYAEAINSGSKSSALNILREKAPKDYVLQFH FT NLNANLDRIFTPPLEVYVSPFCSSSFDQVPEELEEWAAENVLGAAARPLRPISIVIEGE FT SRTGKTIWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFVTLTGPL FT YSGSNQSTA" FT CDS complement(2160..2453) FT /gene="ac4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:C0M633" FT /protein_id="CAQ77155.1" FT /translation="MGNLIYTCSSNSRENTNAQTTDSSTLFPQPGQQISIRTFRELKAL FT QMSKPMWRKTETSLTLEFSKSMADQLEEVANLPTTHMPRQSIQGPSLRPSIF" XX SQ Sequence 2754 BP; 748 A; 567 C; 638 G; 801 T; 0 other; accggatggc cgcgattttt ttaccgtggg ccccaccttg cacgtgctga caaagacatg 60 tggaccaatg aaaattgtcc ctcatagctt aattatttca tggtcccccc tataaacttg 120 ggctccaagt agtgcactct taccaatgtg ggatccatta gtaaacgagt ttcctgaaac 180 cgttcacggt tttaggtgta tgttagcagt taaacatctg cagctactag aaaatacata 240 ttctccagac actctggggt acgatttaat tcgggatttg atctccgtta ttagggctaa 300 gaattatgtc caagcgacca gcagatataa tcatttccac gcccgcctcg aaggtacgcc 360 gccgtctcaa cttcgacagc ccttatgcca gccgtgctgc tgcccccact gtccgcgtca 420 caaaggccag agcatgggtg aacaggccca tgaacaggaa gcccaggatg tacaggatgt 480 acagaagtcc agatgttcct agggggtgtg aagggccatg taaggtccag tcttttgagt 540 ctagacacga tgtagttcat atagggaagg ttatgtgtat tagtgatgtt acccgtggta 600 ctgggttaac ccatagagta ggtaagcgtt tctgtgttaa gtctgtgtat gtattaggga 660 agatatggat ggatgagaat atcaagacta agaatcacac gaatagtgtg atgtttttcc 720 ttgtccgtga ccgtcgtcct gttgataaac cacaagattt tggagaggtg ttcaacatgt 780 ttgacaacga gcctagcact gctactgtga agaatatgca tagagatcgt tatcaggttt 840 tgaggaaatg gcacgcaacg gttacaggtg gacagtacgc gtcgaaggaa caggcattag 900 ttaagaagtt cgttagggtt aataattatg ttgtgtttaa ccagcaggaa gctggtaaat 960 atgagaatca tactgagaat gcattgatgt tgtacatggc gtgtactcac gcctctaatc 1020 ctgtgtatgc taccttaaag atacggatct atttctatga ttcagtatcg aattaataaa 1080 gattgaattt tattgaatat gattgttgta catatacaat gttatgtaat acattccata 1140 atacatggtc gacagctcta attacattgt ttatactaat tacagcaaaa ttatttaaaa 1200 actgcaacac ttgggtctta aataccctta agaaatgacc agtctgaggc tgtaaggtcg 1260 tccagattcg gaaggttaga aaacatttgt gtatccccaa cgctttcctc aggttgtgat 1320 tgaactgtat ctgcacggtg atgaggtctc ggctcctcag gaatggcctg ttgtggtgct 1380 cggttatctt gaaatacagg ggatttgtta tctcccagat aaacacgcca ttctctgcct 1440 gagctgcagt gatgggttcc cctgtgcgtg aatccatagc cgtggcagcg taatgcgatg 1500 aaatatgaac agccgcagtc taggtcaacg cgacgacgcc tggtcccctt cttcgctagc 1560 ctatgctgta ctttgattgg aacctgagta gagtgggcct gtgagggtga cgaaggtcgc 1620 attcttcaaa gcccaatttt tgagtgcgct atttttctct tcgtctaaga actctttata 1680 gctggaattg ggtcctggat tgcagaggaa gatagcggga attccacctt taatttgaac 1740 tggcttcccg tatttagtat ttgattgcca gtccctttgg gcccccatga attccttaaa 1800 gtgctttagg tagtggggat cgacgtcatc aatgacgttg taccaggcgt cattactgta 1860 gacctttggg ctaaggtcga gatgtccaca caaatagttg tgtggaccca atgacctggc 1920 ccatatcgtc ttccccgtcc tactctcacc ctctatgaca atacttatgg gtcttaaagg 1980 ccgcgcagcg gcaccgagaa cattctcggc agcccactcc tcaagttcct cgggaacttg 2040 atcaaaagaa gaagaacaaa aaggagaaac ataaacctcc aagggaggtg taaaaatcct 2100 atctaaatta gcatttaaat tatgaaattg taaaacataa tctttgggag ctttctccct 2160 taaaatattg agggccgaag acttggaccc tgaattgatt gcctcggcat atgcgtcgtt 2220 ggcagattgg caacctcctc tagctgatct gccatcgatt tggaaaactc caaagtcaat 2280 gaagtctccg tctttctcca cataggcttt gacatctgaa gagcttttag ctctctgaat 2340 gttcggatgg aaatttgctg accgggttgg ggaaataagg tcgaagaatc tgttgtttgt 2400 gcattggtat tttccctcga attggatgag cacgtgtaga tgaggttccc cattctcgtg 2460 caattctcga caaaccctaa taaataattt attaactggg gtttccaagt tctgtaattg 2520 ggaaagtgcc tcttctttag taagagagca gttgggatat gttaggaaat aatttttagc 2580 atttatattg aatctgccag ccctaggcat attggtggac actcaaactt actatgtaat 2640 cggtggaatg ggggacaata tatatgtgtc caccaatggc aatttggtaa ttgttgtcat 2700 ctaaaaaaat tcaaaattca aattccgaca aaagcggcca tccgcactaa tatt 2754 //