ID FJ999764; SV 1; linear; genomic RNA; STD; VRL; 7781 BP. XX AC FJ999764; XX DT 25-JAN-2010 (Rel. 103, Created) DT 19-MAR-2010 (Rel. 104, Last updated, Version 2) XX DE Sweet potato mild mottle virus isolate ARU60 polyprotein gene, partial cds. XX KW . XX OS Sweet potato mild mottle virus OC Viruses; Riboviria; Potyviridae; Ipomovirus. XX RN [1] RP 1-7781 RX DOI; 10.1099/vir.0.016089-0. RX PUBMED; 19923261. RA Tugume A.K., Mukasa S.B., Kalkkinen N., Valkonen J.P.; RT "Recombination and selection pressure in the ipomovirus sweet potato mild RT mottle virus (Potyviridae) in wild species and cultivated sweetpotato in RT the centre of evolution in East Africa"; RL J. Gen. Virol. 91(Pt 4):1092-1108(2010). XX RN [2] RP 1-7781 RA Tugume A.K., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (30-APR-2009) to the INSDC. RL Department of Applied Biology, University of Helsinki, PO Box 27 RL (Latokartanonkaari 7), FIN-00014, Helsinki, Finland XX DR MD5; 687c61f5191ee0895e3c29b0b1e64f49. XX FH Key Location/Qualifiers FH FT source 1..7781 FT /organism="Sweet potato mild mottle virus" FT /host="Ipomoea batatas" FT /isolate="ARU60" FT /mol_type="genomic RNA" FT /country="Uganda:Arua" FT /collection_date="01-Apr-2007" FT /db_xref="taxon:41459" FT 5'UTR 1..139 FT CDS 140..>5867 FT /codon_start=1 FT /product="polyprotein" FT /note="coding region disrupted by sequencing gap" FT /db_xref="GOA:D2T0C2" FT /db_xref="InterPro:IPR001456" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR025910" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR031159" FT /db_xref="InterPro:IPR042308" FT /db_xref="UniProtKB/TrEMBL:D2T0C2" FT /protein_id="ACS29485.1" FT /translation="MGKSKLTYKQCIAKWGKAALEAHNNGSARNVSVGTHQIAANIFAF FT YDAKDYHLFAMGKRGGLTPAAEQLRIAIERGTIYKVQYDCHFCPDCDAIVDSEEGWFCE FT DCGEQFNKRDDNVLGNKNDVARALGGWTEYEDATWASFEVAKADMFEVAPTVGQLEKEI FT RAIEKSAGKRLTAYEEEMIEELAYKLDVAKMQEEEQEKVLEETDFSISNDEFPTLGGPQ FT DGVVNETTEEHDKESVVEVAREVEQAGEFKTTHERTNEPISDVAETHVVATPVATLGVT FT DFGAAISKEKLVEKPKTVMWVAKSKAPAAVPATPSKTAVWISKPKLADVLSTVEPVAKP FT PLRTYSDVISIGSMVCPIMIAAIESHSHQNEKLNGFPNAQVIDGPKEEEPVIKYNITFG FT SFNYEVSAKGEQVQAAVKLDEMLEGPDTEPILICQTGSSHKHETKKAAKGLLVQDRFSV FT IGNKVLCKSFPAFKNFMNETRLGGIYRTRKGSYKNAALRLLKATKVQVFYDGIKDIFEC FT PYCHVSSNELEGLNGDNCEKCKDLFYKHIDDPRKVEEEYLMVPLVPIDQHVHEEHSVIS FT KAKWEAHESICEGEANIVKIFNGKSTASKKSFKTKQALNVANIPLDDFMQELVEICLER FT NTPIEIIGGVKSFNVVKLRHTTRDISKSGEDDMYPTEREWFCHTHKLCLCGRIDRGKKI FT RSFEVRPGWSGVILHRNQVAECDWNKFVFIDDICVVQGRNLITDKIENALEKKGANRLK FT QMQFYASFIIPNFKDEFDRASRLKADHEPDESSNNELIGRLAKLVAAVIPKGHLYCKTC FT CFRVIKSKRIDIVNALNKAKQRGERDEFIYDELIKLFELQAPPPYKIASITDEGDVLRT FT LGLSGDLYNGRLSLIMQHLQGLHTSISMLHQSLAGAQNDQQIDRQALHNQVRILHQRNE FT EHMPFLKKAVDEIQLLNATDQVANARELYLDTRATSTGDFDILRKYQSIHEFFPNIMSR FT ANKAGMAVIKSETSLSKAFALMNSAKSMDAIHTLIGEDVMEHISGACLLKNDKTLFSIG FT CKQGVNGSKMYGPLCPTKQHVRIHRVESNMQIPMPTFHDATVWEFNEGYCYANQFAIMV FT GFINEDEMEFYKNQMNQIVLNLGAWPTFEQYLIELRAISLDYPKVRGCPAAIHLVSHVN FT KLIHVMGQFGTINQGWHALEVATVGELVDLCHKKVEGEMLTYKVGGIYDWVTKKNAFID FT LFEQHPENIFKICTSPSVLWLFARSCEKHDFINYIMARDHSLVGLFIKLEYVGKHLHIF FT QSVDDVCVEYAASMREIIEEHADIHGLRDSVVDRMVHAYHNEVREANKYELVDRILEKN FT IGSIAKEISSRKLITMYHQDIFSWHEWQRLKLSAHSLNAQKLFDEANERAYGKQSWNLR FT VIWGACKEVLYAVTRGVCVRVKGTTVRCADAVVYGFYGRTRAMVTSWASEAWGAIFTSC FT LRALVVMVVTAYISTWIPKIRKMIKREKKQFEELGGGELYVEQHGKREEAFLFKICPIF FT ALIAGIVDYEWGAAACATMNKVKSICTVMGSVGIESHANKPDDKVEQDLKESLKFTSFE FT IEVPNEVLSQDDMTFERGFQHQIQYGNVCADPIYSGPLRMLAITENYARELAMNIRTSG FT ETDLRVYSGVGGGKSTRLPKELSMFGHVLICVPTRVLAESLLTSFMVLFNMDVNVAYRG FT RIHTGNAPITIMTYGYAFNFLVHKPLELNRYDYVLLDEIHTNPVEFAPLFSFIKTTDPK FT KKIVKLSATHAGMDCECETRHKIKVETLSEMPIESWVSMQGSGVVGDATSVGDVILVFV FT ASFKDVDTCANGLRSKGFKVLKVDSRNFRRDADVDKQIQSLGEGKKFIVATNIIENGVT FT FNIDVVVDFGEKISPNLSSDERCITLGRQRISRAE" FT mat_peptide 140..2413 FT /product="P1 proteinase" FT mat_peptide 2414..3775 FT /product="helper component proteinase; HC-Pro" FT mat_peptide 3776..4657 FT /product="P3 protein" FT mat_peptide 4658..4813 FT /product="6K1 protein" FT mat_peptide 4814..>5867 FT /product="cytoplasmic inclusion protein; CI" FT gap 5868..5967 FT /estimated_length=unknown FT CDS <5968..7473 FT /codon_start=1 FT /product="polyprotein" FT /note="coding region disrupted by sequencing gap" FT /db_xref="GOA:D2T0C3" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:D2T0C3" FT /protein_id="ACS29486.1" FT /translation="GNNSGQPSTVVDNTLILMIAMEYAISKVFVTRPEIKYVCNGDDLL FT INCPRSTANAISEYFKDAFADLSLNYDFDHICDEITSVDFMSHSFMWLDDEQMYIPKLD FT KERIVAILEWERSDEQFRTRSALNAAYIESFGYEDLMNEIENFASFWAKEHGLENVLME FT REKVRDLYINEDFDASAFEKFYPETFSPFDVYVEPHASTSKTIEELQQEMEDLDADTTI FT TVVQRETQKARIRDQIETLRAQQIVRPSEAQLQPDVTPTQIVTFEPPRVTGFGALWIPR FT QQRSYMTPAYVEKIKAYVPHSNLIESGLASEAQLTSWIESTCRDYQVSMDVFMTTVLPA FT WIVNCIINGTSQERTNEHTWRAVVMANMEDQEVLYYPIKPIIVNAQPTLRQVMRHFGEQ FT AVAQYMNSLQVGKPFTVKGAVTAGYANVQDAWLGIDFLRDTMPLTTKQMEVKHQIIAAN FT VTRRKIRVFALAAPGDGDELDTERHVVDDVARGRHSLRGAQLD" FT mat_peptide <5968..6564 FT /product="nuclear inclusion body protein; NIb" FT mat_peptide 6565..7470 FT /product="coat protein; CP" FT 3'UTR 7474..7781 XX SQ Sequence 7781 BP; 2365 A; 1364 C; 1905 G; 2047 T; 100 other; taaataaaaa tgatatagag aaaatttgaa atacaagcac gaattcagcg aacttatttg 60 caattcagct ttactttaaa cactttattt taattttatc gaactgtggt gtccgcttag 120 aaacggatca gacgcagaaa tggggaaatc caaactcact tacaaacaat gcattgctaa 180 gtggggaaaa gctgcactgg aagcgcacaa caatggatca gcaaggaatg tgtctgttgg 240 cactcatcaa attgcggcaa atatttttgc gttctatgac gcaaaagact accacctatt 300 tgccatgggc aaaagaggtg gactgactcc agcagccgag caattgagaa tcgcaattga 360 acgaggaacg atttacaagg tgcagtatga ctgccacttc tgtcccgatt gtgatgcaat 420 tgttgactct gaggaaggat ggttctgcga ggattgtggt gagcaattca ataagcgcga 480 cgataacgta cttggtaaca agaatgatgt tgcacgcgct cttggcgggt ggactgaata 540 cgaggacgct acctgggcgt cgtttgaggt tgctaaggct gatatgttcg aagtggctcc 600 aactgtgggt caactggaga aagaaatcag agccatagaa aaatcagctg gtaagagact 660 caccgcttat gaagaagaaa tgattgagga gctagcctat aaacttgatg tggccaaaat 720 gcaagaggaa gaacaggaga aagtcctcga ggagactgat ttctcaatct ccaatgatga 780 atttccaact ctcggaggac cgcaagatgg agtagttaat gaaactactg aggaacacga 840 taaggaaagc gtggttgaag tcgcgagaga ggttgagcag gctggagagt ttaaaactac 900 acacgagagg actaatgaac caattagcga cgttgctgaa acgcacgtgg ttgcgacacc 960 tgttgcgact ttaggagtga ccgattttgg agctgcaatt agcaaggaga agctagttga 1020 gaaaccaaaa acagttatgt gggttgcgaa gtcgaaagct cctgctgcag ttcctgcaac 1080 gccatctaag acggctgtct ggatctctaa gcctaagcta gcggacgtgc tttcaaccgt 1140 tgaaccagtc gctaagccac cattgagaac ttacagtgat gtgatcagta taggctctat 1200 ggtgtgtcct atcatgatag cagctattga atcacatagc catcaaaacg aaaagcttaa 1260 tgggtttcca aacgcacaag ttatcgacgg accgaaagaa gaagagccag tgattaagta 1320 caatataact tttggctcat ttaattatga agtgagtgcg aaaggggaac aagtgcaggc 1380 tgctgtcaaa cttgacgaga tgctcgaagg acctgacacc gaacctattt tgatttgcca 1440 aacaggaagc tcccataaac atgaaactaa gaaggcggcg aaagggcttc ttgttcaaga 1500 tagattttca gtgattggaa ataaggtttt gtgcaagtca ttccctgctt tcaagaattt 1560 catgaatgaa acaaggttgg gaggaattta cagaacaaga aaaggaagtt acaaaaacgc 1620 tgcattgcgt ttattgaagg cgactaaagt tcaagtgttt tatgatggaa taaaggatat 1680 tttcgaatgt ccgtattgcc acgtgagcag caacgaacta gagggcttaa atggagacaa 1740 ttgtgaaaag tgtaaggacc tattttacaa acacattgac gacccgagaa aagttgagga 1800 ggaatatctt atggttcctc tcgtgcccat tgatcagcat gttcatgagg aacatagcgt 1860 catcagtaag gctaaatggg aagcgcatga atccatctgt gagggagaag cgaatattgt 1920 caagattttc aatggcaaat caactgcaag caaaaagagc tttaaaacta agcaagccct 1980 gaatgtcgca aatataccac ttgacgactt tatgcaggaa ttagttgaaa tctgtcttga 2040 gaggaacacc cctattgaaa tcattggggg tgtgaaatct tttaatgttg ttaagttgag 2100 gcacaccacg agagacatta gcaagtctgg tgaggatgat atgtatccaa ctgaaagaga 2160 gtggttctgc cacacgcata agctatgttt atgtggaaga attgatcgtg gcaagaaaat 2220 caggagtttc gaggtgcgtc caggttggag tggagtgatc ttgcatagga atcaagtggc 2280 ggagtgtgat tggaataagt ttgttttcat tgatgacata tgcgtggttc aaggtagaaa 2340 cttgatcacg gataaaattg agaatgcact tgaaaagaaa ggggccaata ggcttaagca 2400 gatgcaattc tatgcaagct ttattatacc taatttcaag gacgaatttg acagggctag 2460 ccggctaaaa gctgatcatg aaccggatga gtcgtctaac aatgaactca ttggcaggct 2520 agctaaactt gttgcagcag ttattccaaa aggccattta tactgcaaaa catgctgttt 2580 tagagtcatt aagagcaagc gcatagacat agtcaacgca ttgaataagg ctaagcagcg 2640 tggtgaacgg gatgagttca tttatgatga gcttatcaaa ctgttcgagc tacaagcacc 2700 accaccgtat aagattgcat cgataaccga cgaaggtgac gtgttgcgca cgttaggatt 2760 gagtggagac ctgtataatg gacgcctgag tcttataatg caacatttgc aggggttgca 2820 tacgtcgatt tcaatgcttc accaatcact tgcaggagcc caaaatgacc aacaaattga 2880 caggcaagcg cttcataacc aagtgcggat tctacatcag aggaatgagg agcacatgcc 2940 tttcctaaag aaagcagttg atgaaatcca gcttttaaat gcaacagacc aagttgccaa 3000 cgctcgggaa ttgtacctgg atactagggc aactagtact ggagattttg acatcttacg 3060 aaaataccag agcatacatg agttctttcc caacattatg agccgggcca ataaagcagg 3120 gatggcagtc atcaaatctg aaacttcatt gagcaaagct tttgccctta tgaacagtgc 3180 taagtcgatg gatgctattc atacgctcat aggggaggac gtaatggaac acattagtgg 3240 tgcttgcttg ctgaagaatg acaaaacact tttctcaatt ggttgtaagc aaggtgttaa 3300 tggtagcaag atgtacggtc ctctttgtcc gaccaagcag catgtgagaa ttcaccgagt 3360 tgaatctaac atgcaaattc ctatgccaac attccatgat gcgactgtct gggagtttaa 3420 tgaaggttat tgctacgcca atcaatttgc cataatggtt ggttttatta atgaggatga 3480 gatggagttt tataagaatc aaatgaatca aattgtgttg aacttagggg cttggccaac 3540 ttttgagcaa tacttaattg agctacgagc aatctcgctt gattatccaa aagttagagg 3600 gtgtccagct gctatccatt tagtttccca tgtgaacaag cttatccatg ttatgggaca 3660 atttggaaca ataaatcaag gttggcatgc acttgaagta gcaactgtag gtgagcttgt 3720 agacttgtgc cataagaaag ttgaaggtga aatgttaact tataaagttg gtggcatata 3780 tgactgggtg actaagaaaa atgctttcat tgatctattt gaacaacatc cagaaaacat 3840 attcaagatc tgtacatcac cgtcagtgtt gtggttattt gctcgcagct gcgaaaagca 3900 tgattttatt aactacatca tggcaaggga ccattcacta gtgggtctgt tcataaaatt 3960 ggagtacgtc ggcaagcatc ttcacatttt ccaaagtgtt gacgatgttt gtgttgaata 4020 cgcagcgtct atgagggaaa tcattgaaga gcacgctgat attcatgggc tgcgggattc 4080 agtggtggat agaatggtcc atgcatatca caatgaggtg agagaagcaa ataaatatga 4140 gctagttgat aggatccttg aaaaaaacat tggatcaatt gcgaaagaaa tttcatcgcg 4200 aaagctcata acaatgtatc atcaagacat attctcttgg catgaatggc agcgtttgaa 4260 attaagcgca cactctttga atgcgcagaa acttttcgac gaggcaaacg aacgcgcata 4320 cgggaaacaa tcatggaatt tacgcgtgat ttggggtgcg tgcaaggaag tgttatatgc 4380 agtcacacgc ggagtttgtg taagagtcaa aggaacaact gtgcgctgtg ccgacgccgt 4440 agtatatggc ttctatggta gaacacgagc aatggtaaca agctgggcta gcgaggcctg 4500 gggagctatt ttcacgtcgt gtttgagagc attagttgtt atggtggtca cggcatatat 4560 ctcaacttgg attcctaaga ttaggaagat gattaaacga gaaaagaaac agtttgaaga 4620 acttgggggt ggagagttat atgtagagca acatggcaaa agagaggagg cgtttttatt 4680 caagatttgc cccattttcg cacttatagc aggcatagtt gactacgaat ggggagcagc 4740 tgcatgcgca acaatgaata aagttaagag tatatgcact gttatgggat ctgttggaat 4800 tgaaagccac gccaataagc ctgatgacaa agttgagcaa gatttgaagg aatctctcaa 4860 attcacatct ttcgagattg aagtgccaaa cgaagtttta tcacaggatg atatgacttt 4920 cgaaaggggg ttccaacatc agatccaata tggcaatgtt tgtgcggatc ccatttatag 4980 tggtccacta cgcatgttag caattacgga aaactatgca agagagttgg caatgaacat 5040 tcgcacgtca ggagaaaccg atttgcgtgt ttatagtggt gttggtgggg gaaaatcaac 5100 aaggttaccc aaggaactaa gcatgtttgg acacgtgcta atctgtgttc cgacgagagt 5160 tttggcggaa agcttattga catcatttat ggtgttgttc aatatggatg ttaatgtggc 5220 ttaccgagga aggatacata ctggtaacgc gccaatcaca ataatgactt atggttatgc 5280 attcaatttc ttggtgcaca aaccactgga attaaaccga tatgattatg tgttgctaga 5340 tgaaattcac accaatcctg ttgagttcgc gcctttgttt tcttttatca aaaccacaga 5400 tccaaagaag aaaattgtta agttgtcagc aactcacgct ggtatggatt gcgagtgcga 5460 aactaggcac aagattaagg ttgaaacttt gagcgaaatg ccaatcgaaa gctgggtctc 5520 catgcaaggc tctggggttg tcggtgatgc aacatctgtt ggggatgtaa ttctagtctt 5580 tgttgcatct ttcaaggatg tcgacacatg cgctaatgga ttgcgatcta aaggcttcaa 5640 agttttgaaa gttgatagta gaaactttag acgtgatgca gatgtggata aacaaatcca 5700 atcacttggt gaagggaaga aattcatagt cgccacaaat ataattgaga atggagtgac 5760 attcaacatt gatgttgttg tcgattttgg cgagaaaatt agccctaatc tatcgagcga 5820 tgagcggtgt atcacactgg ggaggcagag aatatcgcga gcagaaannn nnnnnnnnnn 5880 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 5940 nnnnnnnnnn nnnnnnnnnn nnnnnnnggt aataatagtg gtcagccttc aacggttgtt 6000 gacaacacat taatcttgat gattgccatg gagtatgcaa tttctaaagt ttttgtcaca 6060 cgccctgaaa tcaagtatgt ttgtaatggg gatgatcttt taataaattg cccaaggagc 6120 accgcgaatg ccattagtga gtatttcaag gatgcatttg cagacttaag tttgaattat 6180 gattttgatc acatttgtga tgaaattaca agtgttgatt ttatgagtca cagtttcatg 6240 tggttagatg atgagcagat gtatatcccg aagttggaca aggagcgaat tgtggcaatt 6300 ttggagtggg aaagaagcga cgagcaattc aggacaagga gcgccttaaa cgcagcttac 6360 attgagagtt ttggatatga agatctgatg aatgagattg agaatttcgc ttctttttgg 6420 gcgaaagagc atggtctcga aaatgtgctg atggaacgag aaaaagttag agatttgtac 6480 atcaatgagg atttcgatgc gtcagccttt gagaagttct atccggagac attttcgcca 6540 tttgatgttt atgtcgaacc acacgcatcg acatctaaaa caatcgaaga actgcagcaa 6600 gaaatggagg acttggatgc ggacacaaca atcactgtgg ttcaaaggga gacacagaag 6660 gcacggataa gagaccaaat tgagacactt agggcacaac aaattgtgag accttctgaa 6720 gcgcagcttc aacctgatgt gactcccacg caaattgtca cgtttgagcc accgagagtc 6780 actggttttg gtgctttatg gattccgcgc caacaaagga gttacatgac gccagcttac 6840 gtcgagaaga taaaggctta tgttccacac tcaaacttga ttgaatctgg actagcaagt 6900 gaagctcaat tgactagttg gatcgaaagc acgtgcaggg actatcaagt tagtatggac 6960 gtcttcatga ctacagtact gccagcatgg atagttaatt gcataattaa tggaacgtct 7020 caggagcgta cgaatgagca cacatggaga gctgtggtta tggcaaatat ggaagatcag 7080 gaggtgcttt attaccctat caagcccata attgtaaatg ctcagccaac tttgaggcaa 7140 gtgatgcgcc attttggcga gcaagccgtt gctcaataca tgaacagtct tcaagttgga 7200 aaacccttca cagtgaaggg tgccgtaact gctggttatg ctaatgttca agatgcttgg 7260 ttgggtattg actttctccg agacacgatg ccgctgacaa caaaacagat ggaagtcaag 7320 caccaaatta tcgcagcgaa cgttacaagg cggaaaattc gtgtttttgc tcttgcagca 7380 ccgggagatg gcgatgaatt agacacagaa aggcatgttg tcgacgatgt tgctagaggt 7440 cgtcatagtt tgagaggagc tcaactcgat taaatgagca tgttatcttt aatttcaact 7500 gtttgctttc attttaatta cgtttcatgc tttgtgtttg cctgttgtgg cacttgaacc 7560 aggtacagct ggcaggtgtt tcggcatggt gtggttagac aattggtttt caccggtagt 7620 ctaagaagcg ctatgtatca cgtggttggt taattcatag tctatatggg ttaatcaaga 7680 agcgtctatc gcccaaaagg gtaccagaaa atagttgcgt cattcgtggc gcaattagtt 7740 tttggagttt ggctaggtaa cttgtcgcct tcccaaaagc c 7781 //