ID FJ999760; SV 1; linear; genomic RNA; STD; VRL; 7781 BP. XX AC FJ999760; XX DT 25-JAN-2010 (Rel. 103, Created) DT 19-MAR-2010 (Rel. 104, Last updated, Version 2) XX DE Sweet potato mild mottle virus isolate TOR17 polyprotein gene, partial cds. XX KW . XX OS Sweet potato mild mottle virus OC Viruses; Riboviria; Potyviridae; Ipomovirus. XX RN [1] RP 1-7781 RX DOI; 10.1099/vir.0.016089-0. RX PUBMED; 19923261. RA Tugume A.K., Mukasa S.B., Kalkkinen N., Valkonen J.P.; RT "Recombination and selection pressure in the ipomovirus sweet potato mild RT mottle virus (Potyviridae) in wild species and cultivated sweetpotato in RT the centre of evolution in East Africa"; RL J. Gen. Virol. 91(Pt 4):1092-1108(2010). XX RN [2] RP 1-7781 RA Tugume A.K., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (30-APR-2009) to the INSDC. RL Department of Applied Biology, University of Helsinki, PO Box 27 RL (Latokartanonkaari 7), FIN-00014, Helsinki, Finland XX DR MD5; a674ded227004c82eb4197e59f70c052. XX FH Key Location/Qualifiers FH FT source 1..7781 FT /organism="Sweet potato mild mottle virus" FT /host="Ipomoea batatas" FT /isolate="TOR17" FT /mol_type="genomic RNA" FT /country="Uganda:Tororo" FT /collection_date="01-Apr-2007" FT /db_xref="taxon:41459" FT 5'UTR 1..139 FT CDS 140..>5867 FT /codon_start=1 FT /product="polyprotein" FT /note="coding region disrupted by sequencing gap" FT /db_xref="GOA:D2T0B4" FT /db_xref="InterPro:IPR001456" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR025910" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR031159" FT /db_xref="InterPro:IPR042308" FT /db_xref="UniProtKB/TrEMBL:D2T0B4" FT /protein_id="ACS29477.1" FT /translation="MGKSKLTYKQCIAKWGKAALEAQNNELKRSVPVGTHQIAANVFAF FT YDAKDYHLFAMGKRGGLTPAAEQLRIAIERGTIYKVQYDCHFCPDCDAIVDSEEGWFCE FT DCGSQFNKRDDNVLDNKNDVARALGGWTEYEDATWASFEAAKADMLEVAPTVGQLEKEI FT RTIEKSAGKKLTAYEEEMLEELAYKLDMAKMNEEKQEEAIEETVFSLLSDEFPTLEGPK FT DDAINEITEKHNEESVIEVVREVEKPVEFKTTNWKTDEPISDAADAHVVAAPVVASSVT FT NSEMAIGKEKLTGKSKTAMWVTKQRTPAAIPATPSKSAVWVAKPKPASAISIVEPVIKS FT TVGACNDVINVGAMVCPITVAAIESHSHQNEKLNESPDAQVNEATKEEEPVIKYNITFG FT SFNYEVSAKGEQVQAAVQLDEMIEGPDTEPILVCQTGSSHKSETKKAAKGLLVQDRFSV FT IGNKVLCKSFPAFKNFMNETRLGGIYRTRKGNYKNAALRLLKATKVQVFYDGIKDIFEC FT SYCHMSSNELEGLNGDNCVKCKDLFYKHIDAPRKVEEEYLMVPLVPIDQHVHEEHSIIS FT RAKWEAHESICEGEVNVVKTFDGKPTAIKKKFKTKQAPNVANIPLDDFMQELVEICLER FT NTPIEIIGGVKSFNVVKLRHTTRDICKSGEDDMYPTEREWFYHKNKLCLCGGIDREKKV FT RSSEVRPGWSGVILHRNQVAECDWNKFVFIDDICVVQGRNLITNKIENALEKKGATRLK FT QIQFYASSIVPNFKDEFDRASRLKADHEPDESSNNELIGRLAKLVAAVIPKGHLYCKTC FT CFKVIKSKRADIVNALNKAKQRGERDEFIYDELIKLFELQAPPPYKIATIINDDDMLRT FT LGLGGELYSGRLSLIMQHLQGLHTSISMLHQSLAGAQNDQQIDRQALHNQVRILHQRNE FT EHMPFLKKAVDEIQLLNATDQVANARELYLDTRATSTGDFDILRKYQSICEFFPNIMSR FT ANKAGMEVIKSETSLSKAFALMSSAKSMSAIHTLIGEDVIEHVNGACLLRNDKTSFSIG FT CKQGVDGSKMYGPLCPTKQHVRIHRVESNMQIPLPTFHDATVWEFNEGYCYANQFAIMV FT GFINEDEMEFYKNQMNQVVLNLGAWPTFEQYLIELRTISLDYPKVRGCPAAIHLVSHAS FT KLIHVLGQFGTINQGWHALEVATVGELVDLCHKKVEGEMLTYKVGGIYDWVTKKNAFID FT LFEHHPENVFKICTSPSVLWLFARSCEKHDFINYIMARDHSLVGLFIKLEYVGKHLHIF FT QSVDDVCVEYAASMREIIEEHADIHGLQDSVVDRMVHAYHNEVREANKYELVDRILEKN FT IGLTAKEISSRKLITMYHQDLFSWHEWQRLKLMPHSLNAQKLFEEANERAYGKQSWNLR FT VIWGACKEVLYAATRGVFVKVKGTTVRCADAVVYGFYGRTRAMVTSWASEAWGAIFTSC FT LRALVVMVVTAYISTWIPKIRKMIKREKKQFEDLGSGELYVEQHGKREEAFLFKICAIF FT ALIAGIVDYEWGAAACATMNKVKSICTVLGSVGIESHANEPDDKVEQDLKESLKFTSFE FT IDVPNVVLSQDDMTFERWFQHQIQYGNVCADPIYSGPLRMLAITENSARELAMNIRTSA FT ETDLRVYSGVGGGKSTRLPKELSMFGHVLICVPTRVLAESLLTSFMVLFNMDVNVAYRG FT RIHTGNAPITIMTYGYAFNFLVHKPMELNRYDYVLLDEIHTNPVEFAPLFSFIKTTDPK FT KKIVKLSATHAGMDSECETRHKIKVETLSEMPIESWVSTQGSGVVGDATSVGDVILVFV FT ASFKDVDTCANGLRSKGFKVLKVDSRNFRRDADVDKQIQSLGEGKKFIVATNIIENGVT FT FNIDVVVDFGEKISPNLISDERCIMLGRQRISRAE" FT mat_peptide 140..2413 FT /product="P1 proteinase" FT mat_peptide 2414..3775 FT /product="helper component proteinase; HC-Pro" FT mat_peptide 3776..4657 FT /product="P3 protein" FT mat_peptide 4658..4813 FT /product="6K1 protein" FT mat_peptide 4814..>5867 FT /product="cytoplasmic inclusion protein; CI" FT gap 5868..5967 FT /estimated_length=unknown FT CDS <5968..7473 FT /codon_start=1 FT /product="polyprotein" FT /note="coding region disrupted by sequencing gap" FT /db_xref="GOA:D2T0B5" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:D2T0B5" FT /protein_id="ACS29478.1" FT /translation="GNNSGQPSTVVDNTLILMVAMEYAIAKVFVTRPDIKYVCNGDDLL FT INCPRATASAISEHFKDAFADLSLNYDFDHVCDKITDVDFMSHSFMWLETEQMYIPKLD FT KERIVAILEWERSDEQFRTRSALNAAYIESFGYEDLMAEIEKFAHFWAEKHGLCNVLME FT REKVRDLYVNEDFDASAFEKFYPETFSPFDVYVEPHASTSKTIEELQKEMEDLDADTTI FT TVVQRETQKARIREQIEALRAQQIVRPSEAQLQPDVNPTQIVTFEPPRVTGFGALWIPR FT QQRNYMTPAYIEKIKAYVPHSNLIESGLASEAQLTSWFENTSRDYQVSMDVFMSTILPA FT WIVNCIINGTSQERTNEHTWRAVIMANMEDQEVLYYPIKPIIINAQPTLRQVMRHFGEQ FT AVAQYMNSLQVGKPFTVKGAVTAGYANVQDAWLGIDFLRDTMQLTTKQMEVKHQIIAAN FT VTRRKIRVFALAAPGDGDELDTERHVVADVARGRHSLRGAQLD" FT mat_peptide <5968..6564 FT /product="nuclear inclusion body protein; NIb" FT mat_peptide 6565..7470 FT /product="coat protein; CP" FT 3'UTR 7474..7781 XX SQ Sequence 7781 BP; 2385 A; 1387 C; 1884 G; 2025 T; 100 other; aaaataaaaa tgatatagag aaaatttgaa agacaagcac gaactcagca aacttatctg 60 caattcagct ttactttaaa tactttattt taattttatc gaactgtggt gtccgcttag 120 aaacggatca gacgcagaaa tggggaaatc caagctcact tacaaacaat gcattgctaa 180 gtggggaaaa gccgcacttg aggcgcaaaa taacgaatta aaaaggagtg ttcctgttgg 240 aactcatcag atcgcggcaa atgtttttgc gttctatgac gcaaaagact accatctatt 300 tgccatgggc aaaagaggtg gactgactcc ggcagctgag caactgagga ttgcaatcga 360 acgaggaacg atttacaagg tgcagtatga ctgccatttc tgccccgatt gtgatgcaat 420 tgttgactct gaagaggggt ggttttgcga agattgcggt tcgcaattca ataagcgcga 480 tgacaacgtg cttgataaca agaatgatgt cgcacgcgct cttggcgggt ggaccgagta 540 tgaagacgct acttgggcgt cgtttgaagc tgccaaagct gacatgcttg aagtggcgcc 600 aactgtgggc caacttgaaa aagaaatcag aaccatagag aaatcagctg gcaagaaact 660 cactgcttat gaggaagaaa tgcttgagga actggcctat aaacttgata tggctaagat 720 gaatgaggaa aagcaagaag aagctatcga ggaaactgtt ttctcactcc tcagcgatga 780 atttccaact cttgaagggc cgaaggatga cgcaatcaat gaaattactg agaaacataa 840 tgaagaaagc gtaattgagg tcgtgagaga agtggaaaaa cctgttgaat ttaaaaccac 900 taattggaaa accgatgaac caattagtga tgctgctgat gcgcacgtgg tcgcagcacc 960 tgttgtggcc tcaagtgtga ccaactctga gatggcaatc ggcaaggaga agttaactgg 1020 aaaatcaaaa acagctatgt gggtaacaaa gcaaagaact cccgctgcaa ttcctgccac 1080 gccatctaaa tcggctgttt gggtcgctaa gcccaagcca gcatccgcaa tttccattgt 1140 tgaaccagtc attaagtcga cggtgggagc ttgcaatgat gtgatcaatg taggcgccat 1200 ggtgtgtcct atcacggtgg cagcgattga atcacatagt caccaaaatg aaaagcttaa 1260 tgaatctcca gacgcacaag ttaatgaagc aacgaaggaa gaggagccag taattaaata 1320 taatattaca tttggctcat tcaattatga agtaagtgca aaaggggaac aagttcaagc 1380 tgctgtccaa cttgatgaga tgatagaagg acctgatact gaacctattc tggtttgcca 1440 aacaggaagt tcccataaat ctgaaaccaa gaaggcagca aaagggcttc ttgttcagga 1500 tagattctct gtgattggga ataaggttct atgcaaatca tttcctgctt ttaagaattt 1560 tatgaatgaa acaaggttgg ggggaattta cagaactaga aaagggaact acaaaaatgc 1620 tgcattgcgt ttattgaagg cgaccaaagt tcaagtattc tatgatggga taaaggatat 1680 tttcgagtgt tcgtattgcc acatgagcag taatgaactg gagggtctaa atggagacaa 1740 ttgtgtaaaa tgcaaagatc tattttataa acacattgat gctccaagaa aagttgagga 1800 ggaatatctt atggttcctc tcgtgcccat tgatcagcac gtgcatgaag aacatagcat 1860 tattagtagg gctaaatggg aagcgcatga atccatctgt gaaggagaag tgaatgttgt 1920 caagaccttt gatggcaaac caactgcaat caagaagaaa ttcaaaacta agcaagcacc 1980 aaatgttgca aatataccgc ttgacgactt tatgcaggaa ttagttgaaa tttgccttga 2040 gaggaacact cctattgaaa ttataggggg cgtaaagtct tttaatgttg ttaagttaag 2100 gcataccacg agagacattt gcaagtctgg tgaagatgat atgtatccaa ctgaaaggga 2160 gtggttttac cacaagaata aactatgttt atgtggtgga atcgatcgtg agaagaaagt 2220 tagaagttct gaggtgcgtc caggttggag tggagtgatt ttgcatagga atcaagtggc 2280 ggaatgcgat tggaacaagt tcgttttcat tgatgacata tgcgtggtac aaggtagaaa 2340 cctaatcacg aataagattg agaatgcgct tgaaaagaaa ggagccacta gacttaagca 2400 gatacaattt tacgcaagtt ctattgtacc taatttcaag gacgaattcg acagggctag 2460 tcggctgaaa gctgatcacg aaccagatga atcgtctaac aatgaactca ttggcaggct 2520 ggctaagctt gttgcagcag ttattccaaa aggccattta tactgtaaaa catgctgttt 2580 taaggttatc aagagcaagc gtgcagacat agtcaacgca ttgaataagg ctaagcagcg 2640 tggcgagcgg gacgagttta tctatgatga gctcatcaaa ctctttgagt tgcaagcacc 2700 accaccatat aagattgcaa cgataattaa tgacgatgac atgttgcgaa cattaggatt 2760 gggtggggaa ctgtatagtg gacgattgag tctcataatg cagcatttac agggactgca 2820 tacgtcgata tcaatgctac accaatcact tgcaggggct cagaatgacc agcaaattga 2880 caggcaagcg ctccacaacc aagtgcgaat cttacatcaa agaaatgagg agcacatgcc 2940 tttcttaaag aaagcagttg atgaaattca gcttttaaat gcaacagatc aagttgctaa 3000 tgctcgggaa ttgtacttgg atactagagc aactagtact ggagatttcg acattttacg 3060 aaaataccag agcatatgtg agttctttcc caatatcatg agccgagcta ataaagcagg 3120 aatggaagtt attaaatctg aaacatcatt gagcaaagct tttgccctta tgagcagtgc 3180 taagtcaatg agcgctattc atacgctcat aggggaagac gtcatagaac atgttaatgg 3240 agcttgcttg ctgaggaacg acaagacatc tttctcaatt ggttgcaagc agggtgttga 3300 tggtagcaag atgtatggtc cgctttgtcc gactaaacag catgtaagaa tccaccgagt 3360 tgaatctaac atgcaaattc ctttgccaac atttcacgat gcaaccgtct gggagttcaa 3420 cgaaggttat tgctacgcca atcaattcgc tataatggtt ggcttcatca atgaggatga 3480 aatggagttt tataaaaatc agatgaatca agttgtgttg aacttagggg cttggccgac 3540 ttttgagcag tatttaattg agttacgaac aatttcgctt gattacccaa aagttagggg 3600 gtgtcctgct gccattcatt tggtttccca tgcaagtaag ctaattcatg ttttgggaca 3660 atttggaaca ataaatcaag ggtggcatgc acttgaagta gcaactgtgg gtgagcttgt 3720 cgacttgtgt cataagaagg ttgaaggtga gatgttaact tacaaagttg gtggcatcta 3780 cgactgggtg actaagaaga atgcttttat cgatttattt gaacaccatc cagaaaatgt 3840 atttaaaatt tgcacatcgc catcagtgtt gtggttgttt gctcgcagct gtgaaaaaca 3900 tgattttatc aactacatca tggccaggga tcactcatta gtaggtctgt tcattaaatt 3960 ggagtatgtt ggcaagcatc ttcatatttt ccaaagtgtc gacgatgttt gtgttgaata 4020 cgcagcgtct atgagggaaa ttattgaaga gcacgctgat attcacgggc tgcaggattc 4080 agtggtagat agaatggttc atgcatatca taatgaagtg agggaagcaa acaagtatga 4140 gctagttgac agaattcttg aaaaaaacat tggattaaca gcaaaagaaa tttcatcgcg 4200 aaagctcatc acaatgtatc atcaagactt gttctcttgg cacgaatggc agcgtttgaa 4260 attaatgcca cattccttga atgcgcagaa actcttcgaa gaggcaaacg agcgcgcgta 4320 cgggaaacaa tcatggaatt tacgcgtaat ttggggtgcg tgcaaggaag tgttatatgc 4380 agccacacgc ggagtttttg taaaagtcaa aggaacaact gtgcgctgtg ccgacgccgt 4440 agtatatggc ttctatggta gaacacgagc aatggtaaca agttgggcta gtgaggcctg 4500 gggagctatt tttacgtcgt gtctgagagc attagttgtt atggtggtca cggcatacat 4560 ttcaacctgg attcctaaaa ttaggaaaat gatcaaacgc gagaagaaac agtttgaaga 4620 tcttggaagt ggagagttat atgtggagca acatggcaaa agagaggaag catttttatt 4680 caagatttgc gccatctttg cactcatagc aggcatagtt gactacgagt ggggagcagc 4740 tgcatgcgca acaatgaaca aagtcaagag catatgcact gtccttgggt ctgttgggat 4800 tgagagccat gccaatgagc ctgatgataa agtcgagcaa gacttgaagg aatctcttaa 4860 attcacatct tttgagattg acgtaccaaa cgtagttcta tcacaggatg atatgacttt 4920 tgaaaggtgg tttcaacatc aaattcaata tggcaacgtg tgcgcagacc ccatctatag 4980 tggtccatta cgcatgctag caattacaga gaattctgca agagagctag caatgaacat 5040 ccgcacatca gcggaaaccg atctgcgtgt ttatagtggt gttggtggag gaaaatcaac 5100 aaggttgcct aaggaactca gcatgtttgg gcatgtgtta atttgcgttc ccacgagagt 5160 tctggcagaa agcttattaa cctcattcat ggtacttttt aatatggatg ttaatgtggc 5220 ttatagagga aggatacaca ctggtaacgc accaataaca ataatgactt atggttacgc 5280 attcaacttc ttggtgcaca aaccaatgga attaaaccga tatgattatg tgttgctgga 5340 tgaaattcac accaaccctg ttgaatttgc acctttgttt tctttcatca aaaccacaga 5400 tccaaagaag aaaattgtta agttgtcagc aactcacgct gggatggaca gtgagtgtga 5460 aaccaggcac aagattaagg tagaaacttt gagcgaaatg ccaatcgaga gttgggtttc 5520 cactcaaggc tctggggttg ttggtgatgc aacatccgtt ggtgacgtaa ttctggtttt 5580 tgttgcatct ttcaaggacg tcgacacatg tgccaatgga ttgcgatcta aaggcttcaa 5640 agtcttgaaa gttgatagta gaaactttag acgtgatgca gatgtggata aacaaatcca 5700 atcattgggt gaagggaaga aattcatagt cgccacaaat ataattgaaa atggagtgac 5760 attcaacatt gatgttgtcg tcgattttgg cgagaaaatc agccctaatc tcattagcga 5820 tgagcggtgt attatgctag ggaggcagag aatatcgcga gcagagannn nnnnnnnnnn 5880 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 5940 nnnnnnnnnn nnnnnnnnnn nnnnnnnggt aataatagcg ggcagccctc aacagtggtt 6000 gataacacgt tgatcctgat ggttgccatg gagtatgcga tagccaaggt ttttgtcaca 6060 cgccctgaca tcaagtatgt ctgcaatggg gacgatcttt taattaattg tccaagggcc 6120 actgcaagcg ccattagtga gcacttcaaa gacgcattcg cagacttgag cttgaactat 6180 gattttgatc acgtttgtga taaaattaca gacgttgatt tcatgagtca tagtttcatg 6240 tggctggaaa ctgagcagat gtatatacca aagctagata aggagcgaat tgtggcaatt 6300 ttagagtggg aaaggagcga tgagcaattc agaacgagga gcgccttgaa tgctgcttac 6360 attgagagtt ttggctatga agacttaatg gctgagattg aaaaattcgc tcacttttgg 6420 gctgaaaagc atggtctctg taacgtttta atggagcgag agaaggttag agatttatac 6480 gtcaatgaag actttgatgc gtcagctttt gagaagttct atccagaaac attttcgcca 6540 ttcgatgttt atgttgaacc acatgcatcg acatccaaga caatcgagga gctacagaaa 6600 gaaatggagg atttggatgc agacacaaca attactgtgg ttcagaggga gacacagaag 6660 gcgagaataa gagaacaaat tgaggcactt agggcgcaac aaattgttag accttctgaa 6720 gcgcagctac agcctgacgt aaatcccacg caaatcgtca cgtttgaacc accaagagtc 6780 actggatttg gcgctctatg gattccgcgc cagcaaagaa actacatgac gccagcttac 6840 atcgagaaga taaaggctta tgttccacat tcaaacttga ttgagtctgg actagctagt 6900 gaagctcaat tgactagttg gtttgagaac acgagcaggg attaccaagt tagtatggat 6960 gttttcatga gtacaatact gccagcgtgg attgtcaact gcataatcaa tggaacatct 7020 caagagcgca ctaatgagca cacatggaga gctgtgatca tggcgaacat ggaggatcag 7080 gaagtgcttt attaccccat caagcccata ataatcaatg ctcaaccaac tctgaggcag 7140 gtgatgcgcc attttggaga acaagccgtt gctcaataca tgaacagcct tcaagttggg 7200 aaacctttca cagtgaaagg ggccgtaact gctggctacg ctaatgttca ggatgcttgg 7260 ctaggtattg attttctccg ggacacaatg cagttgacga caaaacagat ggaagttaag 7320 caccaaatta tcgcagcgaa cgttacaagg cggaagatcc gtgttttcgc tcttgcagca 7380 ccgggagacg gcgatgaatt agacacagag aggcacgtcg ttgccgatgt ggctaggggt 7440 cgtcatagtc tgagaggagc tcaactcgac taaatgagca cgttatcttt aacttcaact 7500 gcgtgttttt acttcaatta cgttttgtgc tttgtgtgtg tttgttgtgg cacttgaacc 7560 aggtacagct ggcaggtgtt tcggcatggt gtggttagac aattggtttg catcggtggt 7620 ctaagaagca ctatgtatca cgtggttggt taattcatag tttgtatggg ttaatcaaga 7680 agcgtctatc gcccaaaagg gcaccagaaa atggttgcgt cattcgtggc gtaatcagtt 7740 tttggagttt ggctaggtaa cttgtcgcct atccaaaagc c 7781 //