ID FJ882133; SV 1; circular; genomic DNA; STD; VRL; 2688 BP. XX AC FJ882133; XX DT 06-DEC-2009 (Rel. 103, Created) DT 06-DEC-2009 (Rel. 103, Last updated, Version 1) XX DE Maize streak virus isolate MSV-A_ZA_Pot5_O28k-1979, complete genome. XX KW . XX OS Maize streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2688 RX DOI; 10.1099/vir.0.015537-0. RX PUBMED; 19692547. RA Harkins G.W., Martin D.P., Duffy S., Monjane A.L., Shepherd D.N., RA Windram O.P., Owor B.E., Donaldson L., van Antwerpen T., Sayed R.A., RA Flett B., Ramusi M., Rybicki E.P., Peterschmitt M., Varsani A.; RT "Dating the origins of the maize-adapted strain of maize streak virus, RT MSV-A"; RL J. Gen. Virol. 90(Pt 12):3066-3074(2009). XX RN [2] RP 1-2688 RA Harkins G.W., Martin D.P., Monjane A.L., Shepherd D.N., Windram O.P., RA Owor B.E., Donaldson L., van Antwerpen T., Sayed R.A., Flett B., Ramusi M., RA Rybicki E.P., Peterschmitt M., Varsani A.; RT ; RL Submitted (02-APR-2009) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Private Bag, Cape Town, RL WP 7701, South Africa XX DR MD5; 0e3884142d77835db61ce7d7ee84ad61. XX FH Key Location/Qualifiers FH FT source 1..2688 FT /organism="Maize streak virus" FT /host="maize" FT /isolate="MSV-A_ZA_Pot5_O28k-1979" FT /mol_type="genomic DNA" FT /country="South Africa" FT /lat_lon="26.69 S 27.03 E" FT /collection_date="1979" FT /db_xref="taxon:10821" FT CDS 157..462 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:D2E128" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:D2E128" FT /protein_id="ACZ04262.1" FT /translation="MDPQNALYYQPRVPTAAPTSGGVPWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNISAPPSQGNPGPFVPGTG" FT CDS 473..1207 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:D2E111" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:D2E111" FT /protein_id="ACZ04263.1" FT /translation="MSTSKRKRGDDANWSKRVTKKKPSSAGLKRAGSKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAVDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNTSWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT CDS complement(1717..2535) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:D2E130" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D2E130" FT /protein_id="ACZ04264.1" FT /translation="MASSSSNRQFSHRNVNTFLTYPKCPENPEIACQIIWELVVRWIPK FT YIICAREAHKDGSLHLHALVQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAMFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHSTSKEEYLSMIQKEFPY FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQVSPEAYML FT LQPNCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSAQQEPENLLGPEA" XX SQ Sequence 2688 BP; 693 A; 632 C; 683 G; 680 T; 0 other; taatattacc gcgccttctt ttcctgcgag ggcccgctag ggaccgagcg ctttgattta 60 aagcttggtc ctgctttgta tgatttatct aaagcagccc aatctaaaga aaccggtccc 120 gggcactata aattgcctaa caagtgcgat tcattcatgg atccacagaa cgccctgtat 180 tatcagccgc gggtacccac agcagctccg acatccggag gagtgccgtg gagtcgcgta 240 ggcgaggtag ctattttgag ctttgttgca ttgatttgct tttacctgct ttacctttgg 300 gtgctgagag atcttatctt agttctgaag gctcgacaag gcagatccac ggaggagctg 360 atatttggtg gacaagctgt ggataggagc aaccctatcc ctaatatatc tgcaccacca 420 agtcagggca atcccgggcc atttgttcca ggcacgggat aagcattcag ccatgtccac 480 gtccaagagg aagcggggag atgatgcgaa ttggagtaag cgggtgacta agaagaagcc 540 ctcttcagct ggtctgaaga gggctggaag caaggccgat aggccatccc tccaaatcca 600 gacactccag catgcgggga ccaccatgat aacggtcccc tctggaggag tatgtgacct 660 catcaacacc tatgcccgag gatctgacga gggcaaccgc cacaccagcg agactctgac 720 gtacaagatc gccgtcgact accacttcgt tgccgacgcg gcagcctgcc gctactccaa 780 caccggaacc ggtgtaatgt ggctggtgta tgacaccact cccggcggac aagctccgac 840 cccgcaaact atatttgcct accctgacac gctaaaagcg tggccggcca catggaaagt 900 tagccgggag ctgtgtcatc gcttcgtggt gaaacggcga tggttgttca acatggagac 960 cgacggtcgg attggttcgg atattcctcc ctcgaataca agttggaagc cttgcaagcg 1020 caacatctac ttccacaagt tcacgagtgg gttgggagtg agaacgcagt ggaagaatgt 1080 aacggacgga ggagttggtg ccatccagag aggagccttg tacatggtca ttgcccccgg 1140 caatggcctt acatttactg cccatgggca gacccgtctg tactttaaga gtgttggcaa 1200 ccagtaatga ataaaaacgt ccgttttatt atatatgatg aatgctgaaa gcttacatta 1260 atatgtcgtg cgatggcacg aaaaaacaca cgcaatcaat acaggggggt agtcggcggg 1320 cggctaaggg tggtgctcgg cgggcaaaac atcgaaaaat caagatctat atgaattaca 1380 cttcctccgt aggaggaagc acagggggag aataccattt ctcccccggc gacataatgt 1440 aaatgatgca gtttgcttcg aaatactcca gctgccctgg agtcatttcc ttcatccaat 1500 cttcatccga gttggcgagg attattgtag gcttagactt cttctgcacc tttttcttct 1560 taccatactt ggggtttaca atgaaatccc tctgacagcc aactaactgt ttccaacaag 1620 gacagaattt aaacggaata tcatctacga tgttgtagat tgcgtcttcg ttgtatgaag 1680 accaatcaac attattttgc cagtaattat gaacccctag gcttctggcc caagtagatt 1740 ttccggttct tgttgggccg acgatgtaga ggctctgctt tcttgatctt tcatctgatg 1800 actggataca gaatccatcc attggaggtc agagattgca tcctcgaggg tataacagtt 1860 aggttgaagg agcatgtaag cttcgggact gacctggaag atgttaggct ggagccaatc 1920 attgattgac tcattacaga gcaaatcagg tgaggatggt ggatgaggat tggtgaactc 1980 ttcctgaatc tcaggaaaaa gcttatttgc agagtattca aaatactgca attttgtgga 2040 ccaatcatag ggaaactctt tctggatcat agagaggtac tcttctttgg aagtagagtg 2100 tgaaataatg tctcgcatta tttcatcttt ggaaggcttt ttttccttta cctctgaatc 2160 agattttcct aggaaggggg acttcctagg aatgaaagta cctctctcaa acatagccag 2220 aggttccttg agaatgtaat ccctcaccct gttaacggac ttggcactct gaatatttgg 2280 gtgaaaccca tttatatcaa agaaccttga gtccgatatt cttaccggct tctctgtctg 2340 aaccaatgca tgtaaatgca aacttccatc tttatgtgcc tctcgggcac atataatgta 2400 cttgggtatc caacgaacaa cgagctccca gatgatctga caggcgattt caggattttc 2460 tggacacttt ggataggtta agaacgtgtt aacgttcctg tgtgagaact gacggttgga 2520 tgaggaggag gccatatccg acgacggagg atgaggctga gggatggcag atcgggagct 2580 ccaaactcta tacctaccgg tgcgccttcg aaatccgccg ccccccctct tatagtggtt 2640 gtgaatgggc cggaccgggc cggcccagca ggaaaagaag gcgcgcaa 2688 //