ID FJ882091; SV 1; circular; genomic DNA; STD; VRL; 2687 BP. XX AC FJ882091; XX DT 06-DEC-2009 (Rel. 103, Created) DT 06-DEC-2009 (Rel. 103, Last updated, Version 1) XX DE Maize streak virus isolate MSV-A_KE_Kan_K4-1998, complete genome. XX KW . XX OS Maize streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2687 RX DOI; 10.1099/vir.0.015537-0. RX PUBMED; 19692547. RA Harkins G.W., Martin D.P., Duffy S., Monjane A.L., Shepherd D.N., RA Windram O.P., Owor B.E., Donaldson L., van Antwerpen T., Sayed R.A., RA Flett B., Ramusi M., Rybicki E.P., Peterschmitt M., Varsani A.; RT "Dating the origins of the maize-adapted strain of maize streak virus, RT MSV-A"; RL J. Gen. Virol. 90(Pt 12):3066-3074(2009). XX RN [2] RP 1-2687 RA Harkins G.W., Martin D.P., Monjane A.L., Shepherd D.N., Windram O.P., RA Owor B.E., Donaldson L., van Antwerpen T., Sayed R.A., Flett B., Ramusi M., RA Rybicki E.P., Peterschmitt M., Varsani A.; RT ; RL Submitted (02-APR-2009) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Private Bag, Cape Town, RL WP 7701, South Africa XX DR MD5; 48fe93e7e718abf3e35c6850e4596ef6. XX FH Key Location/Qualifiers FH FT source 1..2687 FT /organism="Maize streak virus" FT /host="maize" FT /isolate="MSV-A_KE_Kan_K4-1998" FT /mol_type="genomic DNA" FT /country="Kenya" FT /lat_lon="0.7 S 36.98 E" FT /collection_date="1998" FT /db_xref="taxon:10821" FT CDS 157..462 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:D2E0V9" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:D2E0V9" FT /protein_id="ACZ04142.1" FT /translation="MDPQNALYYQPRVPTAAPTSGGVPWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNIPAPPSQGNPGPFVPGTG" FT CDS 473..1207 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:D2E0W0" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:D2E0W0" FT /protein_id="ACZ04144.1" FT /translation="MSTSKRKRGDDANWSKRVTKKKPSSAGLKRAGSKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAVDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT CDS complement(1714..2532) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:D2E0W1" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D2E0W1" FT /protein_id="ACZ04143.1" FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHSTSKEEYLSMIQKELPF FT DWSTKLQYFEYSANKLFPEIQEQFTNPHPPSQPDLLCNESINDWLQPNIFQVSPEAYML FT LQPNCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSAQQEPENLLGPEA" XX SQ Sequence 2687 BP; 690 A; 624 C; 692 G; 681 T; 0 other; taatattacc gcgccttctt ttcctgcgag ggcccggtag ggcccgagcg atttgatgta 60 aagtttggtc ctgctttgta tgatttatct aaagcagccc attctaaaga aaccggtccc 120 gggcactata aattgcctaa caagtgcgat tcattcatgg atccacagaa cgccctgtat 180 tatcagccgc gggtacccac agcagctccg acatccggag gagtgccgtg gagtcgcgta 240 ggcgaggtag ctattttgag ctttgttgca ttgatttgct tttacctgct ttacctttgg 300 gtgctgagag accttatctt agttctgaag gctcgacaag gcagatccac ggaggagctg 360 atatttggag gacaagctgt ggataggagc aaccctatcc ctaatatacc agcaccacca 420 agtcagggca atcccgggcc atttgttcca ggcacgggat aagcaatcag ccatgtccac 480 gtccaagagg aagcggggag atgatgcgaa ttggagtaag cgggtgacta agaagaagcc 540 ttcttcagct gggctgaaga gggctggaag caaggccgat aggccatccc tccaaatcca 600 aacactccag catgctggga ccaccatgat aacggtcccc tccggaggag tatgtgacct 660 catcaacacc tatgcccgag gatctgacga gggcaaccgc cacaccagcg agactctgac 720 gtacaagatt gccgtagact accacttcgt tgccgacgcg gcagcctgcc gctactccaa 780 caccggaacc ggtgtaatgt ggctggtgta tgacaccact cccggcggac aagctccgac 840 cccgcaaact atatttgcct accctgacac gctaaaagcg tggccggcca catggaaagt 900 gagccgggag ctgtgtcatc gcttcgtggt gaaacggcga tggttgttca acatggagac 960 cgacggtcgg attggttcgg atattcctcc atcgaatgca agttggaagc cttgcaagcg 1020 caacatctac ttccacaagt tcacgagtgg gttgggagtg agaacgcagt ggaagaatgt 1080 aacggacgga ggagttggtg ctatccagag aggagccctg tacatggtca ttgcccccgg 1140 caatggtctt acttttactg cccatgggca gacccgtctg tactttaaga gtgttggcaa 1200 ccagtaatga ataaaacgcc gtttttttta tatctgatga atgctgaaag cttacattaa 1260 tatgtcgtgc gatggcacga aaaacacacg caatcaatac aggggggtag tcggcgggcg 1320 gctaagggtg gtgctcggcg ggcaaaacat cgaaaaatca agatctatct gaatgtactg 1380 cctccgtagg aggcagctca gggggagaat accacttctc ccccggcgac ataatgtaaa 1440 tgatgcagtt tgcctcgaaa tactccagct gccctggagt catttccttc atccaatctt 1500 catccgagtt ggcgaggatt attgtaggct tagacttctt ctgcaccttc ttcttcttac 1560 catatttggg gtttacaatg aaatccctct gacagccaac taactgtttc caacaaggac 1620 agaatttaaa cggaatatca tctacgatgt tgtagattgc gtcttcgttg tatgaagacc 1680 aatcaacatt attttgccag taattatgaa cccctaggct tctggcccaa gtagattttc 1740 cggttcttgt tgggccgacg atgtagaggc tctgctttct tgatctttca tctgatgact 1800 ggatacagaa tccatccatt ggaggtcaga aattgcatcc tcgagggtat aacagttagg 1860 ttgaaggagc atgtaagctt cgggactaac ctgaaagatg ttaggctgga gccaatcatt 1920 gattgactca ttacagagta aatcaggttg ggagggtgga tgaggattgg tgaactgttc 1980 ctgaatctca ggaaaaagct tatttgcaga gtattcaaaa tactgcaatt ttgtggacca 2040 atcaaaggga agctctttct ggatcatgga gaggtactct tccttggaag tagagtgtga 2100 aataatgtct cgcattattt catctttgga aggctttttt tcctttactt ctgaatcaga 2160 ttttcctagg aagggggact tcctaggaat gaaagtacct ctctcaaata cagccagagg 2220 ttccttgaga atgtaatccc tcaccctgtt aactgacttg gcactctgaa tatttgggtg 2280 aaacccattt atatcaaaga accttgagtc agatatcctt accggcttct ctgtctgaag 2340 caatgcatgt aaatgcaaac ttccatcttt atgtgcctct cgggcacata gaatatattt 2400 gggaatccaa cgaacaacga gctcccagat catctgacag gcgatttcag gattttctgg 2460 acactttggg taggttagga acgtgttagc gttcctgtgt gagaactgac ggttggatga 2520 ggaggaggcc atagctgacg acggaggctg aggctgaggg atggcagaat gggagctcca 2580 aactctatag tatacctgtg cgccttcgaa atccgccgct cccttgtctt atagtggttg 2640 taaatgggcc ggaccgggcc ggcccagcag gaaaagaagg cgcgcac 2687 //