ID FJ822136; SV 1; linear; genomic RNA; STD; VRL; 6606 BP. XX AC FJ822136; XX DT 05-APR-2009 (Rel. 100, Created) DT 05-MAY-2011 (Rel. 108, Last updated, Version 4) XX DE Alternanthera mosaic virus from Portulaca grandiflora, complete genome. XX KW . XX OS Alternanthera mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6606 RX DOI; 10.1007/s11262-010-0556-6. RX PUBMED; 21127957. RA Ivanov P.A., Mukhamedzhanova A.A., Smirnov A.A., Rodionova N.P., RA Karpova O.V., Atabekov J.G.; RT "The complete nucleotide sequence of Alternanthera mosaic virus infecting RT Portulaca grandiflora represents a new strain distinct from phlox RT isolates"; RL Virus Genes 42(2):268-271(2011). XX RN [2] RP 1-6606 RA Ivanov P.A., Smirnov A.A., Karpova O.V., Atabekov J.G.; RT ; RL Submitted (11-MAR-2009) to the INSDC. RL Virology, Moscow State University, Leninskie Gori 1-12, Moscow 119991, RL Russia XX DR MD5; 0aa1bdb5eeb875cb12a95da41d92f694. DR EuropePMC; PMC3245411; 22216073. DR EuropePMC; PMC3560364; 23386854. DR EuropePMC; PMC5570366; 28837650. XX FH Key Location/Qualifiers FH FT source 1..6606 FT /organism="Alternanthera mosaic virus" FT /host="Portulaca grandiflora" FT /strain="MU" FT /mol_type="genomic RNA" FT /db_xref="taxon:85454" FT gene 95..4720 FT /gene="RdRp" FT CDS 95..4720 FT /codon_start=1 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:C1KFW0" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:C1KFW0" FT /protein_id="ACO35593.1" FT /translation="MAHFRSVLDQMNDPSLRAVIQEEAYREIKKTIAETKQYNPYAQDP FT AAADSLEKLGIESNPFSVRAHTHAAAKSIELDMYKITGYSLPKENPITFLFMKRSKLQY FT FHRGPQHGDLFLNACIEPKDVTRYALEDLFKPSITPEIQTRVAFIGDTLHFLPLGAIRE FT IFTSSQKLQTLYATMVLPPEAMHRMHSIHPSIYELEFHEKNFIYKPGGHAGASYCHEYS FT QLQWLKVGKFEWCDKKYQKHHVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVT FT LPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKE FT LALIVNYYLLISKLDSVTCFDNVLTGGVLKKLFKPIVAWWSTFKGKIFGKEEFEQLMEA FT LEWVDVSLSYKVETYSQANPNNQPKVMFGYEWLSTETGTPGTEEDVAPETPQEDEDPHE FT RYIQALQTLTKALDQESAPPPTEPAQCSSTSNPQHEEHFRPPHNLHTDESPSCSGSSNS FT FACHCPCGTELKVFSAEFPPIPPLSHGDRLKNREAFFFSRDGTPYSYTGGSHASRGWPA FT FLDQILATAELVRPLPHFSQCLIQKCQRGASTPFHRDDEPCYDADHQVLTINLTGEAEF FT KISCKAGSGSCTLVENQFHLSPPGFQKTHKHSVVSLSAGRVSLTFRSTVKQSVTSEEGD FT CVEPDNLPWKAWLGKLRNLGFRGMQLQYDPNGALISPIESVKSLPKCSPEKVNPSLLKM FT LDDQARAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLAIS FT VIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKALL FT APTKPTVIFDDYGKLPAGYIESFSFYMSSAELLVLTGDSKQSVHHESNENAMSSLIEPF FT TLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKQ FT AFSEMGHKVSTYAGCQGLTAPRVQILLSEETSMCSREVIYTALSRAVHSIHFVNCSPNN FT QAFWAKLESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPKTHIPVDSAMPIYEDILE FT QMPEKHEREIFSEKHGHSNCVQTEDTFVQMFSHQQAKDETLLWATIEARLVLSNPKANW FT QEFMEKKPIGDVLFGFYREAMGLPTEPIAFEPQLWESCIHEVQRTYLAKPINMLKNGQA FT RQSPDYDPNMISLFLKSQWVKKMEKLGALKIKPGQTIASFHQATVMLFGTMARYMRRMR FT EFFQLKNIAINCEMTPEDLTDWAVGPAGQWKFAGPSLANDFTAFDQSQDGAMLQFEVLK FT AKHHSIPEDVLDAYLHIKTNSKIFLGTLAIMRLTGEGPTFDANTECNIAFTHAKFQIPK FT GTAQLYAGDDSAIDGNPPVRESFRMIEQKLKLRSKPVVAMQEKGDWAEFCGYRITPKGF FT IKDPKKLHASLVLEKKKGNLKNVLRSYELDLALAYQHRDELHELLSEEELRLHYDTVRT FT LVKSGGGEVLKTFLPKDESLY" FT gene 4704..5402 FT /gene="TGB1" FT CDS 4704..5402 FT /codon_start=1 FT /gene="TGB1" FT /product="TGB1" FT /note="movement protein" FT /db_xref="GOA:C1KFW1" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:C1KFW1" FT /protein_id="ACO35594.1" FT /translation="MNHFINLLIEEGYVRTNEILSDTLVVHAVAGAGKSTLIRKFIHQL FT PQARAYTHGVPDPPNLEGRFIQAFKSPDPNHFNILDEYCAEPLSGGWNVLIADPLQHRS FT QALRPHYIKRESHRLGVATCELLTRVGLPVLSHKTEDQVDYQGIFEGPLFGTVIALDST FT VRALLLKHGISPLCPAEVLGSEFEETTVVSEVSLSQVKFKHALYIALTRHKKSLHVRAP FT PLPDTPSRSL" FT gene 5356..5688 FT /gene="TGB2" FT CDS 5356..5688 FT /codon_start=1 FT /gene="TGB2" FT /product="TGB2" FT /note="movement protein" FT /db_xref="GOA:C1KFW2" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:C1KFW2" FT /protein_id="ACO35595.1" FT /translation="MSGLPHSLTPPADHSKSVLAAVVGVSLALAINSFLVYRLPSPGDN FT IHHLPFGGSYRDGTKSIHYNSPRAQSQISGASPFLIILILSALIYALSCRGGNRRARLH FT RCPCCS" FT gene 5624..5815 FT /gene="TGB3" FT CDS 5624..5815 FT /codon_start=1 FT /gene="TGB3" FT /product="TGB3" FT /note="movement protein" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:C1KFW3" FT /protein_id="ACO35596.1" FT /translation="MPYLVEAAIAVLACIGVLAALRPGSHPCTILLTGHSATISGDCGP FT VAPETIRALGEHLTGLKF" FT gene 5859..6482 FT /gene="CP" FT CDS 5859..6482 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /note="virion formation" FT /db_xref="GOA:C1KFW4" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:C1KFW4" FT /protein_id="ACO35597.1" FT /translation="MSTPFPQVTQEQIDAFTPHTTSNLLPSPEQLTTIASLLVAAKVPA FT ASTTTIALELVNFCYDNGSSAYTVVVGPSSISGVSLSQVANIVKASGTSLRKFCRFFAP FT IMWNLRTDKTPPANWEANGFKPTEKFAAFDFFDGVENPAAMQPPGGLVRAPSQAERIAN FT ATNKQVNLFQAAAQDNNFASNSAFITKGQLSSNSPTIQYLPPPE" FT CDS 6037..6366 FT /codon_start=1 FT /product="unknown" FT /note="ORF6" FT /db_xref="UniProtKB/TrEMBL:C1KFW5" FT /protein_id="ACO35598.1" FT /translation="MTMAPVPTQWWWALLQSQGSHSPRLLTSSKPQAPLSANSADSLPQ FT SCGTSEQTRHPQLTGKLMGSNLQRSLQPSISSTEWRIRRPCSHQEGWLGLPAKQRESPT FT PPTSR" XX SQ Sequence 6606 BP; 1762 A; 1920 C; 1505 G; 1419 T; 0 other; gaaaagtaaa gcaaagcaaa acaaagcaaa ggaaccgaaa gtccatattt gcccttcgag 60 gagatcgatt acccatccag gctagatcaa cagtatggcc cactttcgtt ccgttcttga 120 ccaaatgaat gaccccagcc ttcgggcggt catccaggaa gaagcttacc gcgaaataaa 180 gaaaaccatc gcggaaacta aacagtacaa tccttacgcc caggatccag cggcggctga 240 ctcattagaa aaattaggaa tagaatctaa ccccttctca gtccgcgctc atacacacgc 300 ggccgcgaag tcaatagaat tagatatgta caaaatcacg ggttactccc tcccgaagga 360 gaatccaatt actttccttt tcatgaagag gtccaaactt caatacttcc acagaggccc 420 acagcatgga gacttattcc ttaatgcttg tattgagcca aaggacgtca ccaggtacgc 480 cttagaagac ctctttaaac cctccataac cccagaaatc caaaccagag tggcattcat 540 tggagacaca ctacacttcc ttcctctagg ggccatcaga gagatattta caagctccca 600 aaagctccaa actctctatg caacaatggt actacccccc gaagccatgc acagaatgca 660 ctcaattcac cccagcatct acgagctaga attccatgaa aaaaatttta tatacaagcc 720 gggaggacat gccggggcgt cttattgcca cgaatactca caacttcagt ggctcaaggt 780 cgggaaattt gagtggtgcg acaagaaata tcagaagcac cacgtgacat cacagattct 840 ggaaaccaag ggtgcaaatc acctttttgt gttccagcgc ggcaacttcg ccacccctac 900 ctaccgaact ttcggggtag agacaaaatt tgtcacactc ccacccatat tcctcccaaa 960 gaaatacaac gcgcggtacc ctataaagaa aactgtggca cagcagctat ttctgtacat 1020 caagtctgtg aaaacagtca cggaaagaga catctgggcc aaagttagac agatcataaa 1080 gaccgctgag ctccaaagct actcggcaaa agagctcgca ctcattgtca actactactt 1140 gctcatctct aagctggact cggtcacatg ttttgacaat gtgcttacag ggggtgtact 1200 caagaagctc tttaaaccca tcgtggcttg gtggtccacc ttcaaaggga agatcttcgg 1260 gaaggaggag ttcgaacaac ttatggaggc gcttgagtgg gttgacgtgt cactgtccta 1320 caaagtggag acatacagcc aagccaaccc aaacaatcag cccaaggtga tgttcgggta 1380 cgagtggctc agcacagaaa cgggaacccc aggaacagag gaggacgtcg ctcccgaaac 1440 cccacaagag gacgaggacc cacatgagag atatattcag gccctccaaa cactgacgaa 1500 ggccctcgac caggagagcg ctccaccacc aacagaacca gcccagtgct ccagcaccag 1560 taatccacag catgaggagc acttccgccc accccacaac ctccacactg atgaatcccc 1620 aagctgctca ggaagctcga attcctttgc ttgccactgc ccgtgcggca cagagctcaa 1680 agttttctca gccgagtttc cacccattcc cccactatcg cacggcgatc ggctcaagaa 1740 cagggaagca ttcttctttt caagagacgg cactccctac agctacacag gaggttccca 1800 cgcgtccaga ggatggccgg ctttccttga ccagatcctg gccactgctg agttggtgag 1860 gcctctcccc cacttcagcc aatgcctcat ccaaaaatgc caaagaggcg cctccacccc 1920 cttccacaga gacgacgagc catgctacga tgcggaccac caagtgctca caatcaacct 1980 caccggtgaa gcggaattca aaatcagctg caaagctggt tcagggagtt gcacgctagt 2040 agagaaccag ttccacctgt ccccccccgg tttccaaaag acgcacaagc acagtgtggt 2100 ctcacttagc gcggggcgag tctccctcac attccgctcc actgtcaagc agagtgttac 2160 ctctgaagag ggtgactgtg tagaacccga taatctgccg tggaaggcct ggctcgggaa 2220 gctgagaaac ttgggcttca ggggcatgca gctgcaatat gatccaaatg gggccttgat 2280 ttcaccaatc gaaagcgtca agtcactccc gaagtgctcc ccggaaaagg tcaacccctc 2340 cctcctcaaa atgctagatg atcaggctcg cgcaccaacc ccattctcgc ccagccccat 2400 cagggcaaag gcttactcct cagacgtcaa aaactctcga attggcgcac tgctccgaca 2460 gcagggcaaa gattggggcc accgtttcga ttcacttgtg gagaatgggc agaggcagct 2520 agccatcagt gtaatccatg gggctggcgg ctctgggaaa tcgagggcgt tgcagatgta 2580 cctgaaggac aacccagatg ctgatgtcac gatagtgcta ccaactaacg agctgaggct 2640 cgactggctg aagaagttgc ccactttccc ggcagaccag atcaaaacct tcgagaaggc 2700 cctgctggct cccacaaagc ccacagttat cttcgatgac tacggcaaac tgccagccgg 2760 gtacattgaa tccttctcat tctacatgtc atcagccgaa cttctggtgc tcaccggtga 2820 ctccaagcag agcgtgcatc acgagtctaa tgagaatgcg atgagcagcc tcatcgaacc 2880 cttcactctg gaagctgata agtactcacg ctattacatc aatgccacac acagaaacaa 2940 gcgtgatttg gctaacaagc taggggtcta ctcagaggtc acggggataa catccatcac 3000 ccaaggcaac caccctgtgc cgggacttca cctgctcgtc ccctcactct acaagaagca 3060 ggctttcagc gaaatgggcc acaaggtttc cacttatgcg ggctgtcagg gtctcacagc 3120 cccacgcgtg caaattctgc tatcagagga gactagcatg tgttcccgcg aagttatcta 3180 caccgccctc tcccgagccg ttcactccat tcacttcgtc aactgcagcc caaacaatca 3240 agctttctgg gccaagctgg agagcacacc ttatctgaaa gctttccttt ccacactccg 3300 agaagacgcg gcacccgtcg tgaaaccaaa ggaggaagca ccagccccag ttgacccccc 3360 aaagactcac atcccagttg actctgccat gccaatctat gaggacatac tagagcagat 3420 gccggaaaag catgagaggg agatcttctc agagaagcat gggcatagca attgcgtgca 3480 aacggaggat acctttgtgc agatgtttag tcaccagcag gcaaaggacg aaacccttct 3540 ctgggccacc atcgaggcga ggctagtcct ttccaacccc aaggctaatt ggcaagaatt 3600 tatggaaaag aaaccaattg gagatgtgct cttcggcttc tacagagaag cgatggggct 3660 gcccaccgaa cctattgcct tcgaaccgca gctttgggag tcttgcattc atgaggtcca 3720 gcgcacctac ttggcaaagc ccatcaacat gctgaagaat ggacaggccc ggcaatcccc 3780 cgattatgat ccaaatatga tatctctctt tctgaagtca cagtgggtaa aaaaaatgga 3840 aaagttggga gccctaaaga tcaagcccgg acaaaccatt gcttccttcc accaagccac 3900 tgtcatgctg tttggcacga tggccaggta catgaggaga atgcgggagt tcttccagct 3960 taagaacatt gctatcaact gcgagatgac cccagaagat ctcaccgact gggccgtggg 4020 tcctgccggc cagtggaaat tcgccggccc ttctttggcc aacgacttca cagcattcga 4080 tcagtcacaa gatggggcga tgcttcaatt tgaggtcctc aaagccaagc accacagcat 4140 tccagaggac gtgttggatg cctatctgca catcaaaaca aactcgaaga tcttcttggg 4200 cacactggcc attatgaggc tcacgggtga aggccccact tttgatgcaa acactgaatg 4260 caacatcgcc tttacccacg caaaattcca gatcccgaag ggtacagccc agctttacgc 4320 gggggatgac tcggcaattg acggcaaccc cccagtgaga gagagcttca ggatgattga 4380 gcagaaattg aagctgaggt caaagccggt ggtcgcgatg caggaaaaag gagactgggc 4440 ggagttctgt ggatacagga ttacgcccaa aggtttcatc aaggatccaa agaagcttca 4500 cgcgagtctg gtgcttgaga agaagaaagg caatctgaag aatgtgctga ggtcttatga 4560 gcttgatctg gccctggcat atcagcaccg ggatgaactt cacgagttac tctctgagga 4620 ggagctgcgt cttcactacg acacggttcg cacactagtt aagtcaggtg gaggagaagt 4680 tttgaaaact tttcttccca aagatgaatc actttattaa cctccttatt gaagagggtt 4740 acgtccggac gaacgaaatc ctctcggaca ctctagtcgt ccatgctgta gccggcgctg 4800 gcaagtccac tctcatccgc aaattcatcc accagcttcc acaggcccga gcgtacaccc 4860 acggagtccc cgacccccca aaccttgaag gccgattcat tcaggctttt aagagccccg 4920 atccaaacca cttcaacatc cttgacgagt attgtgcgga gcctctaagc ggtggttgga 4980 acgtgctcat tgccgacccc ctacaacaca gatctcaagc cctccgaccc cactacatta 5040 aaagagagtc ccacaggcta ggagtagcca cgtgtgaact tctcaccaga gtagggcttc 5100 cagttttgtc ccacaagact gaggatcaag ttgattacca gggcattttc gaagggcccc 5160 ttttcggcac cgtgattgct ctggactcca cggtcagagc cctcctccta aagcacggaa 5220 tttcaccact ctgcccggct gaagtcctcg ggtctgagtt tgaggaaacg acagttgtct 5280 ctgaggtgtc gctcagccag gtcaagttca agcacgctct gtacatcgct ctcacccgcc 5340 acaagaagtc tctccatgtc cgggctcccc cactccctga cacccccagc cgatcactct 5400 aagtcagtgc ttgcagcagt tgtaggagtt agtttagcct tagcaataaa ctctttcttg 5460 gtttatagac ttccctcgcc cggggacaat attcatcacc tgcccttcgg aggttcctac 5520 cgggacggaa ctaagagcat ccactacaat tcgcctaggg cccagagtca gatctcaggt 5580 gcgtcaccgt tcctgatcat cctgatactc tcagccctca tctatgccct atcttgtaga 5640 ggcggcaatc gccgtgctcg cttgcatagg tgtccttgct gctcttaggc cagggtccca 5700 tccctgcaca atcctgctaa ctggacactc tgcgaccatc agtggagatt gtggacccgt 5760 cgcaccagag accatcaggg ctcttggaga acatttaacc gggcttaagt tttagcatta 5820 gtttgattat cctagtctta tcttagttaa aagtcatcat gtccactcca tttcctcaag 5880 tcacccagga acagatagac gctttcactc cacataccac atccaatctc cttccatcac 5940 cggagcagtt gaccaccatt gctagtctct tggttgctgc caaggtgcct gccgcctcaa 6000 ccacaaccat tgccttggaa cttgtcaact tctgctatga caatggctcc agtgcctaca 6060 cagtggtggt gggcccttct tcaatctcag gggtctcact ctcccaggtt gctaacatcg 6120 tcaaagcctc aggcacctct ctccgcaaat tctgcagatt ctttgcccca atcatgtgga 6180 acctcagaac agacaagaca cccccagcta actgggaagc taatgggttc aaacctacag 6240 agaagtttgc agccttcgat ttcttcgacg gagtggagaa tccggcggcc atgcagccac 6300 caggagggtt ggttagggct cccagccaag cagagagaat cgccaacgcc accaacaagc 6360 aggtgaacct ctttcaggcc gcggcacagg acaacaactt cgccagcaac tctgcattca 6420 tcaccaaggg ccaactgtcc tccaactcac caactattca atacctccca ccaccggagt 6480 gatttctcca cccagtccaa gcccgttgtt ttcgcaattt tgttggggct atcgagtttc 6540 caaaattgct ttcgcttctg tagacctaaa ttacagccta gtttgcggtt taatacctat 6600 ttacgc 6606 //