ID   FJ820174; SV 1; linear; genomic RNA; STD; VRL; 2427 BP.
XX
AC   FJ820174;
XX
DT   27-JAN-2011 (Rel. 107, Created)
DT   27-JAN-2011 (Rel. 107, Last updated, Version 1)
XX
DE   Pepino mosaic virus isolate 4983 RNA-dependent RNA polymerase (RdRp) gene,
DE   partial cds; and triple gene block protein 1 (TGBp1), triple gene block
DE   protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat protein
DE   (CP) genes, complete cds.
XX
KW   .
XX
OS   Pepino mosaic virus
OC   Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus.
XX
RN   [1]
RP   1-2427
RA   Cordoba-Selles M.C., Saval P., Herrera-Vasquez J.A., Jorda C.;
RT   "Pepino mosaic virus and Olpidium virulentus: agents associated with the
RT   occurrence of tomato collapse in Spain";
RL   Unpublished.
XX
RN   [2]
RP   1-2427
RA   Cordoba-Selles M.C.;
RT   ;
RL   Submitted (11-MAR-2009) to the INSDC.
RL   IAM, UPV, Camino de Vera s/n, Valencia 46022, Spain
XX
DR   MD5; b8e1fc48dfd055a00d5557fb6b83fb2a.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2427
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="4983"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain"
FT                   /collection_date="2001"
FT                   /db_xref="taxon:112229"
FT   gene            <1..487
FT                   /gene="RdRp"
FT   CDS             <1..487
FT                   /codon_start=2
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="ORF1"
FT                   /db_xref="GOA:E8Z9B8"
FT                   /db_xref="UniProtKB/TrEMBL:E8Z9B8"
FT                   /protein_id="ACZ28072.1"
FT                   /translation="TFDANTECSIAYTATRYHLDSTVKQVYAGDDMALDGVVQEKPSFK
FT                   KLQNKLKLTSKTLFPKQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAA
FT                   RSYAIDMKHSYQMGDELHNYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPKATH"
FT   gene            513..1217
FT                   /gene="TGBp1"
FT   CDS             513..1217
FT                   /codon_start=1
FT                   /gene="TGBp1"
FT                   /product="triple gene block protein 1"
FT                   /note="ORF2"
FT                   /db_xref="GOA:E8Z9B9"
FT                   /db_xref="InterPro:IPR027351"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:E8Z9B9"
FT                   /protein_id="ACZ28073.1"
FT                   /translation="MERSTLINLLQLHHFEPKLSVEGIIVVHGIAGTGKTTLLRTLFSA
FT                   YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFPEPKLAIFGDPCQC
FT                   TYIERLRVPHYTSFRTHRFGKSTAEILNKLFDLNIVSVKKEDDIVEFFNPFEVDPTEHI
FT                   SASEEEVLDFVSDQVVTTSSEELAGLEFAETTFYCTTLAAAVAENSAKTFISLTRHTHK
FT                   LTIGELNARSNS"
FT   gene            1198..1569
FT                   /gene="TGBp2"
FT   CDS             1198..1569
FT                   /codon_start=1
FT                   /gene="TGBp2"
FT                   /product="triple gene block protein 2"
FT                   /note="ORF3"
FT                   /db_xref="GOA:Q8JJH7"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JJH7"
FT                   /protein_id="ACZ28074.1"
FT                   /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT                   PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSFSRTTHQH
FT                   SCYNTHSATNNTQPLSGHH"
FT   gene            1421..1675
FT                   /gene="TGBp3"
FT   CDS             1421..1675
FT                   /codon_start=1
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /note="ORF4"
FT                   /db_xref="GOA:Q8B083"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:Q8B083"
FT                   /protein_id="ACZ28075.1"
FT                   /translation="MSSYLSSFSHWVLSSPINLVLALVVLLTSILAITHIQQPTIHNHC
FT                   QVIIDGAAIVITNCENTPEVLKAINFSPWNGLSFPKFEN"
FT   gene            1714..2427
FT                   /gene="CP"
FT   CDS             1714..2427
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="ORF5"
FT                   /db_xref="GOA:Q8JJF2"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JJF2"
FT                   /protein_id="ACZ28076.1"
FT                   /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
XX
SQ   Sequence 2427 BP; 734 A; 587 C; 443 G; 662 T; 1 other;
     aacttttgat gccaacacag aatgttcaat agcatatact gctacaagat accatcttga        60
     ttctacagtc aagcaggttt atgctggaga tgatatggca ttagatggag ttgtccaaga       120
     aaaaccctct tttaaaaaac tacagaacaa gcttaaactc acctcaaaga cactatttcc       180
     aaaacaggtt aaaggtgatt atgctgaatt ctgtggttgg actttcactc ctggtggtat       240
     cattaaaaac cctttgaaaa tgcatgcttc cattatgttg caagaggcaa tcggcaattt       300
     acacactgct gccagatcat atgccattga catgaagcat tcataccaaa tgggtgatga       360
     gctgcacaat tacttaacac cagatgaagc tgaacaacac ttccttgctg ttcggaagtt       420
     gcacaagtta caccaaggag aagcaatgag acttggtgaa aagagccctc caaaagcaac       480
     acattgaggg gttaagtttt ccccagttcg aaatggaaag atcaactctg attaatttac       540
     ttcaattgca ccacttcgag ccaaaactca gtgttgaagg aatcatagtt gtgcacggaa       600
     ttgcaggcac tgggaaaacc actttactta ggactttatt ttctgcttac cctagcttag       660
     ttataggttc acctaggcct tgctatttag ataaacaaaa caaaatttca caagtttgct       720
     tatcttgctt tcccaatacc cattgtgata ttgtcgatga gtatcatttg ctagaaagtt       780
     ttccagaacc aaaattggct atctttggtg acccctgtca atgcacatac attgagagac       840
     ttagagtccc acattacact tccttcagaa ctcatagatt tggaaagtca actgctgaga       900
     ttttgaacaa actgtttgac cttaatatag tctcagttaa gaaagaagac gacatcgttg       960
     aattctttaa cccttttgaa gttgacccca ctgagcatat ctctgcctct gaagaagaag      1020
     tcttggactt tgtttctgac caagtggtga ccactagctc agaggaacta gcaggacttg      1080
     agtttgcaga aacaactttc tactgcacaa cattggccgc agctgttgct gaaaattctg      1140
     ctaagacttt catctctctg actagacaca cccacaaact caccattggg gaactaaatg      1200
     ccaggtctaa ctcctagagc tgacctcact gacacataca aaatcattgc cattgctttc      1260
     ttgttgtcag cttgcattta cttccaaaat agccactacc aacctgttgc tggagacaac      1320
     ttgcaccgtt tgccttttgg tggccaatat caagacggca ccaaaaagat atcttatttt      1380
     ccacaacagc aatcatactt tcattctgga aacaaattaa atgtcctcat acttatcttc      1440
     attctcacat tgggtattgt cctcaccaat aaatttagtt ttagctttag tcgtactact      1500
     caccagcatt cttgctataa cacacattca gcaaccaaca atacacaacc attgtcaggt      1560
     catcattgac ggtgctgcaa tagtcataac aaattgtgag aacacaccag aagtgcttaa      1620
     agcaatcaac ttctcccctt ggaacgggtt aagttttcct aaatttgaaa attaatattg      1680
     agtgttcaca aaaatcaact tcaataaaca atcatgcctg acacaacacc tgttgctgcc      1740
     acttcaagtg caccacccac agccaaagat gctggtgcca aagctccttc tgacttctca      1800
     aatcccaata cagctcctag tctcagtgat ttgaagaaag tcaagtatgt ctccaccgtg      1860
     acctccgtgg ccacaccagc tgaaattgaa gccctaggca aaatcttcac cgctatgggc      1920
     cttgccgcca atgagactgg tccggccatg tgggatctag ctcgtgcata tgctgatgtg      1980
     cagagttcta aatcggcaca gctgattgga gctacccctt ccaaccctgc actatcacgc      2040
     cgagcccttg ctgctcagtt ygatcgaatc aatataaccc ccaggcaatt ttgcatgtac      2100
     tttgccaaag ttgtttggaa catacttctc gacagcaaca ttccaccagc aaattgggcc      2160
     aaacttggtt accaagaaga tacaaaattt gctgcatttg acttcttcga tggagtcacc      2220
     aaccctgcca gcctgcagcc tgctgatggt cttatcaggc agccaaatga gaaagaacta      2280
     gctgctcact ccgtagctaa gtacggcgcc ttggctaggc aaaagatctc cacaggtaat      2340
     tatattacca cacttggaga agtcacacgt ggacacatgg gaggagctaa caccatgtac      2400
     gcgatagacg caccccctga actttaa                                          2427
//