ID FJ795771; SV 1; linear; genomic RNA; STD; VRL; 4223 BP. XX AC FJ795771; XX DT 05-OCT-2010 (Rel. 106, Created) DT 19-NOV-2010 (Rel. 106, Last updated, Version 2) XX DE Sweet potato feathery mottle virus isolate HOM11 polyprotein gene, partial DE cds. XX KW . XX OS Sweet potato feathery mottle virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-4223 RX DOI; 10.1111/j.1365-294X.2010.04682.x. RX PUBMED; 20609081. RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.; RT "Molecular genetic analysis of virus isolates from wild and cultivated RT plants demonstrates that East Africa is a hotspot for the evolution and RT diversification of sweet potato feathery mottle virus"; RL Mol. Ecol. 19(15):3139-3156(2010). XX RN [2] RP 1-4223 RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (25-FEB-2009) to the INSDC. RL Department of Applied Biology, University of Helsinki, P.O. Box 27 RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland XX DR MD5; 183c0084f079bb5d87117ea1a990e5bc. XX FH Key Location/Qualifiers FH FT source 1..4223 FT /organism="Sweet potato feathery mottle virus" FT /host="Ipomoea hederifolia" FT /isolate="HOM11" FT /mol_type="genomic RNA" FT /country="Uganda:Hoima" FT /db_xref="taxon:12844" FT CDS <1..4002 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:E1U7L3" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:E1U7L3" FT /protein_id="ACY74503.1" FT /translation="GATSCVLHQTKDSLSKHLGLKGVWNKSVITQDLLILAGVFAGGIW FT MIMAGVKDSFDQTVLHQGKEKRQMQKLKFRKARDNKLGFEVHADDGTIEHFFGSAYTKK FT GKQKGKVTGMGSKNRKFINMYGFDPTEYSFVRFVDPLTGAVIDDSPYTDILLVQERIGE FT ARLNAIKEDELSREKVAQNPGIHAYYINEITNAALKVDLTPHNPLLACERHSTIAGHPE FT YEGVLRQTGPPIKMTLNDVPVNPEEASLVGHESKSLFRGLRDYNPIASVICHLVNEADG FT RTSDCFGIGYGGLIVTNRHLFKRNNGTLTIRSRHGEFVIKNTTQLGMKPCADRDILIIR FT MPKDIPPFPQRLKFRVPKENERICLVGSNFQDKSITSTISETSVTCHVPNSHFWKHWID FT TKDGHCGLPLVSTTDGALLGVHSLSNLTNTQNFFASFPENFEVDYLKTPEAMDWIKKWS FT YNPDEICWGTLELKTGQPVAPFKVTKLITDLEGIQVYAQTRSDKWVQDRLYGNLKAVGQ FT CPAQLVTKHVVKGKCMLFDLYLQQDQSEKEYFKPLMGAYGKSRLNKEAYNKDLFKYATQ FT IQAGDVQVDTFELAEKSVISMLTAKGFEKCNYVTDPEEILKALNMKAAVGAMYSGKKKD FT YFEGMSDHDVEDHLFHSCKRLFMGHKGLWNGSLKAELRPMEKVELNKTRTFTAAPLDTL FT LGGKVCVDDFNNMFYNHHLKCPWTVGITKFYQGWDRLLTSLPEGWVYCDADGSQFDSSL FT SPYLINSVLNIRREFMEDWNVGDQMLRNLYTEIVYTPILTPDGTIVKKFKGNNSGQPST FT VVDNTLMVVLAVHYTLLKLGIQENEFDKRCVFFANGDDLLLAVRPDTAHLLDKFSECFS FT ELGLNYDFSSRTNKKEDLWFMSHCGVKRDGIFIPKLEPERIVSILEWDRSHEPIHRLEA FT ICAAMVESWGYDELLHHIRKFYAWVLDQAPYNELARNGKAPYIAETALKALYTGVQPNA FT SELSAYTRVLKEMYDDSMLQENDLEVYHQSNERTEFKDAGANPPAPKPKDIPPPPTITE FT ITDPEDPKQAALKAARAKQPAVIPESYGRDTSKERESIVGTSSKGVRDKDVNVGTVGTF FT VVPRVKMNANKKRQPMVNGRAIINFQHLSTYEPEQFEVANTRSTQEQFQAWYEGVKGDY FT GIDDTGMGILLNGLMVWCIENGTSPNINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIM FT THFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLARYAFDFYELHSTTPARAKEAHLQ FT MKAAALKNARNRLFGLDGNVSTQEEDTERHTTTDVTRNIHNLLGMRGVQ" FT mat_peptide <1..27 FT /product="cytoplasmic inclusion protein; CI" FT mat_peptide 28..186 FT /product="6K2 protein" FT mat_peptide 187..762 FT /product="VPg protein" FT mat_peptide 763..1491 FT /product="NIa-Pro protein" FT mat_peptide 1492..3054 FT /product="nuclear inclusion body; NIb" FT mat_peptide 3055..3999 FT /product="coat protein; CP" XX SQ Sequence 4223 BP; 1359 A; 770 C; 978 G; 1116 T; 0 other; ggagccacct cttgtgtgct ccatcaaact aaggattctc tctcaaaaca tcttggtctg 60 aagggagtat ggaacaagtc agttattaca caggacctac ttattctcgc aggagttttt 120 gctggtggaa tctggatgat aatggcggga gtgaaggatt catttgatca aactgtgcta 180 catcaaggaa aagaaaagag gcaaatgcaa aagctgaaat tcagaaaggc acgcgataat 240 aaacttggat tcgaagtgca tgctgatgat ggaactattg aacacttctt tggtagtgca 300 tacaccaaga aagggaaaca aaaaggaaag gttactggaa tgggatcgaa gaatagaaaa 360 tttataaaca tgtacggatt tgatcccact gaatattcct ttgtccgatt tgttgaccca 420 ttgactggag ctgtgataga tgactcccca tacacagata ttcttcttgt tcaggagagg 480 attggtgagg ctcgtttgaa tgccatcaaa gaagatgaac tttcaagaga aaaagttgca 540 caaaatccag gaattcatgc atattatatc aatgaaatca caaatgccgc acttaaagtt 600 gatcttacac cgcacaatcc attacttgca tgtgaaagac atagcactat tgccggtcat 660 cctgaatatg aaggagtttt gagacaaacc ggacccccaa ttaagatgac actaaatgac 720 gtgccagtga atcctgaaga ggcaagtttg gttgggcatg aaagtaaatc attatttaga 780 ggcttaagag attataatcc aatagctagc gtcatatgtc atctcgtgaa tgaggcagat 840 ggaagaacaa gtgactgttt cgggattgga tatggcggtc tcattgtcac caataggcat 900 ctgtttaaac gaaacaatgg gacgttgaca ataagatctc gtcatggaga gtttgttatt 960 aagaacacaa ctcaacttgg aatgaagccc tgtgctgata gagacatact aattattagg 1020 atgcctaagg atataccccc gttcccacaa cgcttgaaat ttagggttcc aaaggaaaat 1080 gaaagaatct gcttggttgg atcaaatttt caggataaat caatcacgag cacaatttct 1140 gaaaccagcg taacgtgcca tgtgccaaac tcacattttt ggaagcactg gattgataca 1200 aaagatggac attgtggtct tcccttagta agcactactg atggtgcttt gttgggagtg 1260 catagtctat caaatttgac gaacactcag aacttctttg catcatttcc tgagaacttt 1320 gaagtggact atttgaaaac tcctgaggca atggattgga taaagaaatg gagttataat 1380 ccagatgaaa tttgttgggg aacgctggag ctgaagacag gacaacccgt tgccccattc 1440 aaagtaacca aactaatcac ggacttagaa ggcatacaag tgtacgctca aacaaggtcg 1500 gataaatggg ttcaagatag actatatggc aatcttaaag cagttggtca atgtcctgca 1560 caattggtta ctaagcacgt tgtgaaggga aaatgcatgc tatttgacct atatttgcaa 1620 caagaccaat ctgaaaagga atatttcaaa cctctcatgg gagcatacgg gaaaagtaga 1680 cttaataagg aggcttacaa taaggattta ttcaagtacg caacgcaaat tcaagcgggt 1740 gatgtgcaag tggatacatt tgaactggcg gagaaatctg ttatctccat gctcacagca 1800 aagggatttg agaagtgtaa ttatgtcaca gacccagagg agattttgaa agcactgaat 1860 atgaaggctg cagtcggtgc gatgtacagt ggaaagaaga aggattactt tgaaggaatg 1920 agtgatcacg atgttgaaga tcatcttttt cacagttgca agcgtttgtt catgggacat 1980 aaaggtcttt ggaatggatc cttgaaagct gagttgagac ctatggaaaa agtggaactt 2040 aacaaaacaa gaaccttcac agcggctcct cttgacacgc tacttggtgg taaggtgtgt 2100 gtagacgatt tcaataacat gttttacaac caccatttaa aatgtccatg gacggtagga 2160 ataaccaaat tctaccaagg atgggatagg cttctcacat ctctacctga gggatgggtt 2220 tattgtgacg ctgatggctc acaatttgat agttctcttt ctccatattt gatcaattca 2280 gttcttaaca taagaagaga atttatggaa gattggaatg ttggtgatca aatgctgcgg 2340 aatttataca cagaaatagt gtacacacca atactgacac cagatgggac catagtgaag 2400 aagttcaaag gtaacaacag tggacagcca tccactgtgg ttgataatac acttatggtt 2460 gtgttagcag ttcactacac actgctgaaa ctaggaatcc aagaaaatga gtttgataaa 2520 cgctgtgtct ttttcgcaaa tggcgatgat ttattgttgg cagtgaggcc agatacagcc 2580 catttattgg ataagtttag cgaatgcttt tctgaattag gactcaatta tgacttttca 2640 tcacgaacaa ataagaaaga agatctatgg tttatgtcac attgtggcgt gaaacgtgat 2700 ggaatattta ttccgaagtt ggagcctgaa aggattgttt caattcttga atgggatcgt 2760 tcacacgagc caattcatcg actggaagca atatgtgccg ctatggtgga atcatggggt 2820 tatgatgaac ttcttcatca tattaggaaa ttctatgcat gggttctgga ccaagcccca 2880 tacaatgaac tagcacgaaa tgggaaagca ccgtacatag ctgaaactgc actcaaagca 2940 ctctacactg gtgttcaacc taatgcttct gaattgagtg cgtatacgag agtgctcaaa 3000 gaaatgtatg atgacagtat gctccaagag aatgatttgg aagtatatca tcaatctaat 3060 gagcgcactg aatttaaaga tgcaggagcg aaccctccag cccctaagcc taaggatatt 3120 cctccaccac ccacaataac tgagatcact gatccagagg acccgaagca ggcagctttg 3180 aaagctgcac gagcaaagca acccgcagtc attccagaat catatggacg agacacgagc 3240 aaagaaaggg agtcaatagt ggggacatca tcaaagggtg tgagggataa ggatgtgaat 3300 gttggcaccg ttggcacatt tgtcgtgcca cgtgtcaaga tgaatgcaaa caagaaaagg 3360 caaccaatgg tcaatggaag ggccattatt aatttccagc atttgtcaac atatgaacca 3420 gagcagtttg aggttgcaaa cacccgttcg acccaagaac aattccaagc atggtatgag 3480 ggagtcaaag gggattatgg tattgacgac acaggaatgg ggatcttact gaatggacta 3540 atggtttggt gcattgaaaa tggcacatcc ccaaatataa atggtgtgtg gacaatgatg 3600 gacggtgatg aacaggtgac atacccaatt aaaccattat tggatcatgc agtgcctact 3660 tttaggcaaa ttatgacgca cttcagtgac gttgctgaag cctatataga aatgcgaaac 3720 cgtacaaagg cgtacatgcc aagatatggt ctacaacgta atttgactga tatgagtctt 3780 gcgcgatatg catttgattt ttacgagctg cattcaacta cacctgcacg tgctaaagaa 3840 gcacatttac agatgaaggc agccgcactt aagaatgcgc gaaatcggtt gtttggtttg 3900 gacggaaacg tctccacgca agaagaagat acggagaggc acacgacaac tgatgttact 3960 agaaatatac ataacctctt aggaatgagg ggtgtgcaat aggacatcct ctgcactgta 4020 gtttatactt atgttatctt tagtatgcct ttaatttaaa ttcgtgtctt tcagtcccga 4080 aggagatggt tgaatgcata acatggtggg attctatctc ggttattgca ttcgagaagt 4140 cacctttcta ttacgtatca taacggactc ttaaaagtga ggagtacctc gtaagaaaag 4200 cctttttggt tcgtgatcga gcc 4223 //