ID FJ795762; SV 1; linear; genomic RNA; STD; VRL; 4223 BP. XX AC FJ795762; XX DT 05-OCT-2010 (Rel. 106, Created) DT 19-NOV-2010 (Rel. 106, Last updated, Version 2) XX DE Sweet potato feathery mottle virus isolate RUK108 polyprotein gene, partial DE cds. XX KW . XX OS Sweet potato feathery mottle virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-4223 RX DOI; 10.1111/j.1365-294X.2010.04682.x. RX PUBMED; 20609081. RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.; RT "Molecular genetic analysis of virus isolates from wild and cultivated RT plants demonstrates that East Africa is a hotspot for the evolution and RT diversification of sweet potato feathery mottle virus"; RL Mol. Ecol. 19(15):3139-3156(2010). XX RN [2] RP 1-4223 RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (25-FEB-2009) to the INSDC. RL Department of Applied Biology, University of Helsinki, P.O. Box 27 RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland XX DR MD5; 1faca706564dde268b20c68d8d76da4e. XX FH Key Location/Qualifiers FH FT source 1..4223 FT /organism="Sweet potato feathery mottle virus" FT /host="Ipomoea batatas" FT /isolate="RUK108" FT /mol_type="genomic RNA" FT /country="Uganda:Rukungiri" FT /db_xref="taxon:12844" FT CDS <1..4002 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:E1U7K4" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:E1U7K4" FT /protein_id="ACY74494.1" FT /translation="GATSCVLHQTKDALSKHLRLKGVWNKSVITQDLFILAGVFAGGLW FT MIMAGLKESFDQTVLHQGKEKRQMQKLKFRKARDNKLGFEVHADDGTIEHFFGSAYTKK FT GKQKGKVTGMGSKNRKFINMYGFDPTEYSFVRFVDPLTGSVIDDSPYTDILLVQERIGE FT ARLNAIKEDELSREKVAQNPGIHAYYINEITNAALKVDLTPHNPLLACERHSTIAGHPE FT YEGVLRQTGPPIKMTLNDVPVNPEEASLVGHESKSLFRGLRDYNPIASVICHLMNEADG FT RTSDCFGIGYGGLIITNRHLFKRNNGTLTIKSRHGEFVIKNTTQLGMKPCADRDILIIR FT MPKDIPPFPQRLKFRVPRENERICLVGSNFQDKSITSTISETSVTCHVPNSHFWKHWID FT TKDGHCGLPLVSTTDGALLGVHSLSNLTNTQNFFASFPENFEVDYLKTPEAMDWIKKWS FT YNPDEICWGTLELKTGQPVAPFKVSKLITDLEGIQVYAQTRSDRWVQDRLHGNLKAVGR FT CPAQLVTKHVVKGKCMLFDLYLQQDQSEKEYFKPLMGAYGKSKLNKEAYNKDLFKYATQ FT IQAGDVQVDTFELAERSVISMLTSKGFEKCNYITDPEEILKALNMKAAVGAMYSGKKKD FT YFEGMSDHDVENHLFHSCKRLFMGHKGLWNGSLKAELRPMEKVELNKTRTFTAAPLDTL FT LGGKVCVDDFNNMFYNHHLKCPWTVGITKFYQGWDRLLTSLPEGWVYCDADGSQFDSSL FT SPYLINSVLNIRREFMEDWDIGDQMLRNLYTEIVYTPILTPDGTIVKKFKGNNSGQPST FT VVDNTLMVVLAVHYTLLKLGIQESEFDKCCVFFSNGDDLLLAMRPDTAHLLDKFGECFS FT ELGLNYDFSSRTSKKEDLWFMSHCGVKRDGIFIPKLEPERIVSILEWDRSHEPIHRLEA FT ICAAMVESWGYDELLHHIRKFYAWVLDQAPYNELARNGQAPYIAETALKALYTGVQPNA FT SELSAYTRVLKEMYDDSMLQENDMEVYHQSNEKTEFKDAGANPPAPKPKGIPPPPTITE FT ITDPEDPKQAALKAARAKQPAVIPESYGRDTSKERESIVGTSSKGVRDKDVNVGTVGTF FT VVPRVKMNANKKRQPMVNGRAIINFQHLSTYEPEQFEVANTRSTQEQFQAWYEGVKGDY FT GVDDTGMGILLNGLMVWCIENGTSPNINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIM FT THFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLARYAFDFYELHSTTPARAKEAHLQ FT MKAAALKNARNRLFGLDGNVSTQEEDTERHTTTDVTRNIHNLLGMRGVQ" FT mat_peptide <1..27 FT /product="cytoplasmic inclusion protein; CI" FT mat_peptide 28..186 FT /product="6K2 protein" FT mat_peptide 187..762 FT /product="VPg protein" FT mat_peptide 763..1491 FT /product="NIa-Pro protein" FT mat_peptide 1492..3054 FT /product="nuclear inclusion body; NIb" FT mat_peptide 3055..3999 FT /product="coat protein; CP" XX SQ Sequence 4223 BP; 1364 A; 767 C; 978 G; 1114 T; 0 other; ggagccacct cttgtgtgct tcatcaaacg aaagatgcgc tctcaaagca ccttcgtttg 60 aaaggagtgt ggaataaatc agtcatcaca caggatttgt tcattttagc aggggtattt 120 gctggtggtt tgtggatgat aatggcgggg ttaaaagaat cgtttgatca aactgtgcta 180 caccaaggaa aagaaaagcg acaaatgcaa aagctgaagt ttaggaaagc gcgagataat 240 aaacttggat tcgaagtgca cgctgatgat ggaactatcg aacacttctt tggtagtgca 300 tacaccaaga aagggaaaca aaaaggaaag gttactggaa tgggatcaaa gaacagaaaa 360 tttataaaca tgtacggatt tgatcccact gaatattcct ttgtccgatt tgttgacccg 420 ttaactggat ctgtgataga tgattcccca tacacagata ttcttcttgt tcaggagagg 480 attggtgagg ctcgtttgaa tgccatcaaa gaagatgaac tttcaagaga gaaagttgca 540 caaaatccag gaattcatgc atactatatc aatgaaatca caaatgctgc actcaaagtt 600 gatcttacac cgcacaatcc actacttgca tgcgaaagac atagcaccat tgctggtcat 660 cctgaatatg aaggagtttt gagacaaact ggacccccaa ttaagatgac acttaatgac 720 gtgccagtga atcctgaaga ggcaagttta gttgggcatg agagtaagtc actattcaga 780 ggcttaaggg attacaaccc aatagcaagt gttatatgtc acctaatgaa tgaagcggat 840 gggagaacaa gcgattgctt tggaatcgga tacggtggtc ttattataac aaataggcat 900 cttttcaaaa ggaacaatgg cacattaaca attaaatctc gacatggaga atttgttatc 960 aagaacacaa cccaacttgg gatgaaacct tgtgctgaca gagacatact catcattagg 1020 atgcctaagg atatacctcc gtttccacaa cgcctgaaat ttagggttcc aagagaaaat 1080 gaaagaatct gcttggttgg atcaaatttt caggataaat caatcacgag cacgatttct 1140 gaaaccagcg tgacgtgcca tgtgccaaac tcgcattttt ggaagcactg gatcgataca 1200 aaagatggac actgtggtct tcccttagta agcactactg atggtgcttt gttgggagtg 1260 catagcctat caaatttgac gaacactcag aacttctttg catcatttcc tgagaatttt 1320 gaagtggact atttgaaaac tcctgaggca atggattgga taaagaagtg gagttataat 1380 ccagatgaaa tttgttgggg aacgctggaa ctgaaaacag gacaacccgt tgccccattc 1440 aaagtgtcca aactaattac ggacttagaa ggcatacaag tgtatgctca aacaaggtca 1500 gatagatggg ttcaagatag actacatggc aatcttaaag cagttggtcg atgtcctgca 1560 caattggtta ctaagcacgt tgtgaaggga aaatgcatgc tatttgacct atatttgcag 1620 caagatcaat ctgaaaagga gtatttcaag cctcttatgg gagcatacgg gaaaagtaag 1680 ctcaacaaag aggcgtataa taaggatttg tttaagtatg cgacacaaat tcaggcagga 1740 gatgtgcaag tggatacgtt cgaattggcg gaaagatctg tcatttccat gctcacatca 1800 aaaggatttg aaaagtgcaa ctacattaca gatccagagg aaattctgaa agcactgaat 1860 atgaaggctg cagtcggtgc gatgtacagt ggaaagaaga aggattactt tgaaggaatg 1920 agtgatcacg atgtagaaaa ccatcttttt cacagttgca agcgtttgtt catgggacac 1980 aaaggtcttt ggaatggatc cttgaaagct gagttgagac ctatggaaaa agtggaactt 2040 aacaaaacaa gaaccttcac agcagctcct cttgacacgt tacttggtgg taaggtgtgt 2100 gtagacgatt tcaacaatat gttttacaac caccatttaa aatgcccatg gacggtagga 2160 ataaccaaat tctaccaagg atgggatagg cttctcacat ctctacctga gggatgggtt 2220 tattgtgacg ctgatggctc acaatttgat agttctctct ctccatattt gattaattca 2280 gttcttaata taagaagaga atttatggag gattgggata ttggtgatca aatgcttcgg 2340 aatttataca cagaaatagt gtacacacca atactgacac cagatggaac catagtgaag 2400 aagttcaaag gtaacaacag tggacagcca tccactgtgg ttgataatac acttatggtt 2460 gtattagcag ttcactacac actgctgaaa ctaggaatcc aagaaagcga gtttgataaa 2520 tgctgtgtct ttttctcaaa tggtgatgat ttattgttgg caatgaggcc agatacagct 2580 catttactgg ataagtttgg tgaatgtttt tctgaattag gactcaatta tgacttttca 2640 tcacgaacaa gtaagaaaga agatctatgg tttatgtccc actgtggcgt gaaacgtgat 2700 ggaatattta ttccgaagtt ggagcctgaa aggattgttt caattcttga atgggatcgt 2760 tcacacgagc caattcatcg actggaagca atatgtgccg cgatggtgga atcatggggt 2820 tatgatgaac ttcttcatca tattaggaaa ttctatgcat gggttttgga ccaagcccca 2880 tacaatgaac tagcacgaaa tgggcaagcc ccatacatag ctgaaactgc actcaaagca 2940 ctctatactg gtgttcaacc taatgcttct gaattgagtg cgtatacgcg agtgctcaaa 3000 gaaatgtatg atgacagtat gctccaagag aatgatatgg aagtatatca tcaatctaat 3060 gagaaaactg aatttaaaga tgcaggagcg aaccctccag ctcctaagcc taaaggcatt 3120 cctccaccac ccacaataac tgagattact gatccagagg accccaagca agcagctttg 3180 aaagctgcac gagcaaagca acctgcagtc attccagaat catatggacg agacacgagc 3240 aaagaaaggg agtcaatagt ggggacatca tcaaagggtg tgagggataa agatgtgaat 3300 gttggcaccg ttggtacatt tgttgtgcca cgtgtcaaga tgaatgcaaa caagaaaagg 3360 caaccaatgg tcaatggaag ggccattata aatttccagc acttgtcaac gtatgaacca 3420 gagcagtttg aggttgcaaa cacccggtcg actcaagaac agttccaagc atggtatgaa 3480 ggagttaaag gggattatgg tgttgacgac acaggaatgg ggatcttatt gaatggacta 3540 atggtttggt gcattgaaaa tggcacatcc ccaaatataa atggtgtgtg gacaatgatg 3600 gatggtgatg agcaagtgac atatccaatt aaaccattac tggaccatgc agtgcctact 3660 tttaggcaga ttatgacgca cttcagtgac gttgctgaag cttacataga gatgcgaaac 3720 cgtacaaagg cgtacatgcc aagatatggt ctacaacgta atttgactga tatgagtctt 3780 gcgcgatatg catttgattt ctacgagctg cattcaacta cacctgcacg tgctaaagaa 3840 gcacatttac agatgaaggc agccgcactt aagaatgcgc gaaatcggtt gtttggtttg 3900 gacggaaacg tctccacgca agaagaagat acggagaggc acacgacaac tgatgttact 3960 agaaatatac ataacctctt aggaatgagg ggtgtgcaat aggacatcct ctgcactgta 4020 gcttatactt atgttatttt tagtatgcct ttaatttaaa ttcgtgtctt tcagtcccga 4080 aggagatggt tgaatgcata acatggtggg attatatctc ggttattgca ttcgagaagt 4140 cacctttcta ttacgtatca taagggactc ttaaaagtga agagtacctc gtaagaaaag 4200 cctttttggt tcgtgatcga gcc 4223 //